Rmu_sc0007109.1_g000009
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007109.1
OG0000146
Physical Location & Seq
Forward (+)
32627 .. 33406
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007109.1_g000009.1.cds

Sequence Viewer

Length: 780 bp
atgctggttgaagaaggaaaactggatggaggattgacccttaattcgttgttcaatgaagaaggaaacagaggctcctcttctactcctcgtgatgtcatttttgttcaaaacgtgactgataactccatctttggtgttaaacttgatggcatcaattatcagctatggcagaggcttatgaagatccatattcaagggattggcaagtggggatatgttactggtagcatcacaaagccattagaaggaccaaaagcagaagcattggatatgacaaacaccaatgtgatggggattcttctcaaagctatgactctagaagtgatgcaattgtttgcacattatgattctcctaaggctatatgggagtgtgctgctactacttattatgataggagtgattttgcccgtattcatgaattaaactacaaaatcttcaagatgactcagactggacaatctgttgcaacttactatccaaccttgaagaccatttggcaagaacttgatcagagacaccctaatcttatgacgtgtgaagctgatattaaaacataccaagcagagcaagataagatgcatgtccacatctttcttggtggtttggattcacacttggagggcgcaaagaatgagtttctgcgccttaccacgccaccaaccttggagcaagcctttgcctacatacgaaaagatgaatccaacaaggcaaccacaaagaatctacacactaaaatttctggtttgacagttcagtccacaccttcccactcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

259

Amino Acids

29.25

Weight (kDa)

6.31

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 757
AclWI GGATC 1 cut(s) 181
AcsI RAATTY 1 cut(s) 738
AfiI CCNNNNNNNGG 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 536
AgsI TTSAA 6 cut(s) 11, 55, 110, 197, 442, 490
AjiI CACGTC 1 cut(s) 537
AleI CACNNNNGTG 1 cut(s) 287
AluBI AGCT 3 cut(s) 166, 311, 545
AluI AGCT 3 cut(s) 166, 311, 545
Alw26I GTCTC 1 cut(s) 511
AlwI GGATC 1 cut(s) 181
ApeKI GCWGC 1 cut(s) 377
ApoI RAATTY 1 cut(s) 738
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AspLEI GCGC 2 cut(s) 629, 648
AspS9I GGNCC 1 cut(s) 251
AvaII GGWCC 1 cut(s) 251
AxyI CCTNAGG 1 cut(s) 357
BauI CACGAG 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 497
BbvI GCAGC 1 cut(s) 364
BccI CCATC 4 cut(s) 20, 137, 143, 286
BclI TGATCA 1 cut(s) 511
BcoDI GTCTC 1 cut(s) 511
BfaI CTAG 1 cut(s) 320
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme18I GGWCC 1 cut(s) 251
BmgBI CACGTC 1 cut(s) 537
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 76
BmsI GCATC 4 cut(s) 162, 240, 318, 570
BpiI GAAGAC 1 cut(s) 497
BsaJI CCNNGG 1 cut(s) 666
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 3 cut(s) 27, 229, 460
Bse21I CCTNAGG 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 666
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMII CTCAG 1 cut(s) 464
BseNI ACTGG 3 cut(s) 27, 229, 460
BseRI GAGGAG 2 cut(s) 67, 78
BseXI GCAGC 1 cut(s) 364
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 511
Bsp143I GATC 2 cut(s) 186, 511
BspCNI CTCAG 1 cut(s) 463
BspHI TCATGA 2 cut(s) 418, 776
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 1 cut(s) 181
BsrI ACTGG 3 cut(s) 27, 229, 460
BssECI CCNNGG 1 cut(s) 666
BssMI GATC 2 cut(s) 186, 511
BssSI CACGAG 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 666
Bst2BI CACGAG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 754
Bst6I CTCTTC 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 675
BstDEI CTNAG 2 cut(s) 357, 450
BstF5I GGATG 1 cut(s) 31
BstHHI GCGC 2 cut(s) 629, 648
BstKTI GATC 2 cut(s) 189, 514
BstMAI GTCTC 1 cut(s) 511
BstMBI GATC 2 cut(s) 186, 511
BstNSI RCATGY 1 cut(s) 587
BstV1I GCAGC 1 cut(s) 364
BstV2I GAAGAC 1 cut(s) 497
BstX2I RGATCY 1 cut(s) 186
BstXI CCANNNNNNTGG 1 cut(s) 292
BstYI RGATCY 1 cut(s) 186
Bsu36I CCTNAGG 1 cut(s) 357
BtrI CACGTC 1 cut(s) 537
BtsCI GGATG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 675
CciI TCATGA 2 cut(s) 418, 776
CfoI GCGC 2 cut(s) 629, 648
Cfr13I GGNCC 1 cut(s) 251
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
CviAII CATG 3 cut(s) 419, 584, 777
CviJI RGCY 8 cut(s) 75, 166, 178, 241, 311, 362, 545, 677
CviKI_1 RGCY 8 cut(s) 75, 166, 178, 241, 311, 362, 545, 677
DdeI CTNAG 2 cut(s) 357, 450
DpnI GATC 2 cut(s) 188, 513
DpnII GATC 2 cut(s) 186, 511
DrdI GACNNNNNNGTC 1 cut(s) 757
DseDI GACNNNNNNGTC 1 cut(s) 757
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 666
Eco47I GGWCC 1 cut(s) 251
Eco81I CCTNAGG 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 666
EcoT22I ATGCAT 1 cut(s) 585
ErhI CCWWGG 1 cut(s) 666
FaeI CATG 3 cut(s) 422, 587, 780
FatI CATG 3 cut(s) 418, 583, 776
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 1 cut(s) 320
GlaI GCGC 2 cut(s) 628, 647
GluI GCNGC 1 cut(s) 378
HhaI GCGC 2 cut(s) 629, 648
Hin1II CATG 3 cut(s) 422, 587, 780
Hin6I GCGC 2 cut(s) 627, 646
HinP1I GCGC 2 cut(s) 627, 646
HinfI GANTC 7 cut(s) 298, 316, 350, 448, 611, 701, 724
Hpy166II GTNNAC 2 cut(s) 589, 762
Hpy188I TCNGA 2 cut(s) 453, 516
Hpy188III TCNNGA 5 cut(s) 92, 320, 419, 442, 777
Hpy8I GTNNAC 2 cut(s) 589, 762
HpyAV CCTTC 4 cut(s) 8, 56, 242, 777
HpyCH4III ACNGT 1 cut(s) 754
HpyCH4IV ACGT 2 cut(s) 114, 536
HpyCH4V TGCA 4 cut(s) 331, 341, 470, 583
HpyF3I CTNAG 2 cut(s) 357, 450
HpySE526I ACGT 2 cut(s) 114, 536
Hsp92II CATG 3 cut(s) 422, 587, 780
HspAI GCGC 2 cut(s) 627, 646
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 2 cut(s) 186, 511
LmnI GCTCC 2 cut(s) 80, 670
LpnPI CCDG 4 cut(s) 8, 210, 441, 729
Lsp1109I GCAGC 1 cut(s) 364
LweI GCATC 4 cut(s) 162, 240, 318, 570
MaeI CTAG 1 cut(s) 320
MaeII ACGT 2 cut(s) 114, 536
MaeIII GTNAC 2 cut(s) 115, 220
MalI GATC 2 cut(s) 188, 513
MboI GATC 2 cut(s) 186, 511
MboII GAAGA 7 cut(s) 23, 71, 72, 196, 293, 430, 502
MfeI CAATTG 1 cut(s) 332
MflI RGATCY 1 cut(s) 186
MluCI AATT 5 cut(s) 43, 157, 332, 422, 738
MlyI GAGTC 2 cut(s) 310, 442
MmeI TCCRAC 2 cut(s) 506, 729
MnlI CCTC 6 cut(s) 23, 65, 88, 99, 168, 616
Mph1103I ATGCAT 1 cut(s) 585
MseI TTAA 4 cut(s) 42, 141, 425, 552
MslI CAYNNNNRTG 1 cut(s) 287
MunI CAATTG 1 cut(s) 332
NdeII GATC 2 cut(s) 186, 511
NlaIII CATG 3 cut(s) 422, 587, 780
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 585
NspI RCATGY 1 cut(s) 587
OliI CACNNNNGTG 1 cut(s) 287
PagI TCATGA 2 cut(s) 418, 776
PfeI GAWTC 5 cut(s) 298, 350, 611, 701, 724
PkrI GCNGC 1 cut(s) 379
PleI GAGTC 2 cut(s) 310, 442
PpsI GAGTC 2 cut(s) 310, 442
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 251
PsuI RGATCY 1 cut(s) 186
RseI CAYNNNNRTG 1 cut(s) 287
SaqAI TTAA 4 cut(s) 42, 141, 425, 552
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 2 cut(s) 186, 511
Sau96I GGNCC 1 cut(s) 251
SchI GAGTC 2 cut(s) 310, 442
SetI ASST 8 cut(s) 117, 168, 313, 488, 539, 547, 668, 769
SfaNI GCATC 4 cut(s) 162, 240, 318, 570
SinI GGWCC 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 287
Sse9I AATT 5 cut(s) 43, 157, 332, 422, 738
SspMI CTAG 1 cut(s) 320
StyI CCWWGG 1 cut(s) 666
TaaI ACNGT 1 cut(s) 754
TaiI ACGT 2 cut(s) 117, 539
TasI AATT 5 cut(s) 43, 157, 332, 422, 738
TfiI GAWTC 5 cut(s) 298, 350, 611, 701, 724
Tru1I TTAA 4 cut(s) 42, 141, 425, 552
Tru9I TTAA 4 cut(s) 42, 141, 425, 552
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 5 cut(s) 72, 197, 407, 435, 714
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 1 cut(s) 738
XbaI TCTAGA 1 cut(s) 319
XceI RCATGY 1 cut(s) 587
XcmI CCANNNNNNNNNTGG 1 cut(s) 596
XspI CTAG 1 cut(s) 320
Zsp2I ATGCAT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.