Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000863.1

Orthogroup ID

OG0000146

Physical Location & Seq

Genomic Coordinates Forward (+)

75975 .. 76606

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000863.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atggagccgacgccgtcctcttcctttctcgtcatcttcgagaagaagacaacccaaatcgatctctaccgcccacttcgccactacatcgctttcaattactcagagcgcaaggcccagtaccttgaagacaacctccaaaccctaaagttccgacttagagcgccaaacccgagccacgcagatccagtgctcgaaaaggttctcttccgcctctcgagtctttgcctccttctcccaattttgttaaagatgaaagttacttggtctaagttccgcgttccaatgtgggtgccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005829 GO:0005911 GO:0006996 GO:0007032 GO:0007033 GO:0007275 GO:0008150 GO:0009506 GO:0009653 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016050 GO:0022603 GO:0030054 GO:0031156 GO:0031285 GO:0031286 GO:0031410 GO:0031982 GO:0032101 GO:0032102 GO:0032104 GO:0032105 GO:0032107 GO:0032108 GO:0032182 GO:0032501 GO:0032502 GO:0036257 GO:0042173 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043621 GO:0043900 GO:0043901 GO:0043937 GO:0043938 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045881 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051241 GO:0055044 GO:0065007 GO:0071840 GO:0075260 GO:0075262 GO:0097708 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ALIX_LYPXL_bnd BRO1

Protein Analysis

99

Amino Acids

11.75

Weight (kDa)

9.86

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000146)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica	Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis	pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis	RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata	RLG00000009017
rosa_multiflora	Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii	Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa	Rorug06G0120700
rosa_samantha	Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana	Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	292
AccII	CGCG	1 cut(s)	279
AciI	CCGC	3 cut(s)	70, 211, 277
AclWI	GGATC	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	97, 128
Alw21I	GWGCWC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	179
Ama87I	CYCGRG	2 cut(s)	172, 217
AoxI	GGCC	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	201
AspLEI	GCGC	2 cut(s)	111, 166
AspS9I	GGNCC	1 cut(s)	115
AvaI	CYCGRG	2 cut(s)	172, 217
BanI	GGYRCC	1 cut(s)	292
BbsI	GAAGAC	2 cut(s)	53, 135
Bbv12I	GWGCWC	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	167
BmeT110I	CYCGRG	2 cut(s)	172, 217
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	2 cut(s)	6, 294
BmrI	ACTGGG	1 cut(s)	112
BmuI	ACTGGG	1 cut(s)	112
BpiI	GAAGAC	2 cut(s)	53, 135
Bsa29I	ATCGAT	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	11
Bse1I	ACTGG	2 cut(s)	118, 188
BseCI	ATCGAT	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	2 cut(s)	118, 188
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	116
BshNI	GGYRCC	1 cut(s)	292
BshVI	ATCGAT	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	2 cut(s)	172, 217
BsnI	GGCC	1 cut(s)	116
BsoBI	CYCGRG	2 cut(s)	172, 217
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	61, 184
BspACI	CCGC	3 cut(s)	70, 211, 277
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	116
BspDI	ATCGAT	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	6, 294
BspPI	GGATC	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	118, 188
BssMI	GATC	2 cut(s)	61, 184
BssNI	GRCGYC	1 cut(s)	11
Bst6I	CTCTTC	2 cut(s)	25, 212
BstACI	GRCGYC	1 cut(s)	11
BstDEI	CTNAG	3 cut(s)	103, 158, 270
BstFNI	CGCG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	2 cut(s)	111, 166
BstKTI	GATC	2 cut(s)	64, 187
BstMBI	GATC	2 cut(s)	61, 184
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstUI	CGCG	1 cut(s)	279
BstV2I	GAAGAC	2 cut(s)	53, 135
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
Bsu15I	ATCGAT	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	116
BsuTUI	ATCGAT	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	195
CfoI	GCGC	2 cut(s)	111, 166
Cfr13I	GGNCC	1 cut(s)	115
ClaI	ATCGAT	1 cut(s)	60
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	121
CviJI	RGCY	3 cut(s)	7, 116, 177
CviKI_1	RGCY	3 cut(s)	7, 116, 177
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	3 cut(s)	103, 158, 270
DpnI	GATC	2 cut(s)	63, 186
DpnII	GATC	2 cut(s)	61, 184
Eam1104I	CTCTTC	2 cut(s)	25, 212
EarI	CTCTTC	2 cut(s)	25, 212
EciI	GGCGGA	1 cut(s)	200
Eco88I	CYCGRG	2 cut(s)	172, 217
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
GlaI	GCGC	2 cut(s)	110, 165
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	116
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	2 cut(s)	111, 166
Hin1I	GRCGYC	1 cut(s)	11
Hin6I	GCGC	2 cut(s)	109, 164
HinP1I	GCGC	2 cut(s)	109, 164
HinfI	GANTC	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	106, 155
Hpy188III	TCNNGA	2 cut(s)	40, 217
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	3 cut(s)	103, 158, 270
Hsp92I	GRCGYC	1 cut(s)	11
HspAI	GCGC	2 cut(s)	109, 164
Kzo9I	GATC	2 cut(s)	61, 184
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	2 cut(s)	131, 201
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	2 cut(s)	63, 186
MboI	GATC	2 cut(s)	61, 184
MboII	GAAGA	6 cut(s)	12, 28, 55, 58, 140, 199
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	2 cut(s)	97, 240
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	4 cut(s)	28, 146, 224, 239
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	1 cut(s)	248
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	78
NdeII	GATC	2 cut(s)	61, 184
NlaIV	GGNNCC	2 cut(s)	6, 294
PaeR7I	CTCGAG	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	201
PflFI	GACNNNGTC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PspN4I	GGNNCC	2 cut(s)	6, 294
PspPI	GGNCC	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	184
PsyI	GACNNNGTC	1 cut(s)	13
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	248
Sau3AI	GATC	2 cut(s)	61, 184
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	3 cut(s)	126, 138, 204
Sfr274I	CTCGAG	1 cut(s)	217
SlaI	CTCGAG	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	2 cut(s)	97, 240
SsiI	CCGC	3 cut(s)	70, 211, 277
TaqI	TCGA	4 cut(s)	39, 60, 195, 218
TasI	AATT	2 cut(s)	97, 240
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TscAI	CASTG	1 cut(s)	195
TspDTI	ATGAA	1 cut(s)	269
TspRI	CASTG	1 cut(s)	195
Tth111I	GACNNNGTC	1 cut(s)	13
XhoI	CTCGAG	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.