Rroxscaffold_2G00095820

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
17169022 .. 17175081
6060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00095820.1

Sequence Viewer

Length: 390 bp
ATGGCTTGTAACTATTGTAAGGAAGTTGGTCATTTCAAGATTCAATGTCCTAAGTTGCAAAGATTTCATTCCAACAATTCTGGTTGGAGTGAAGGGGGCAATACTGGAGGGAGTAGAAGTCAGAGAGACAAAGTTGCAATCCAACAGGTGCCAGAACCTGATTTCTACAGTGTTGAAGGGCAAGACCTCTCTAAGGATAATGTTTTCTTGACTAAGAAAACTCGAGAGTGCAATTTCTACAATGTTGAAGGGCAAGACCTCTCTAAGGGTATTGTTTCATTGACTAAGGAAACTCGAGGATTCCCAGTGCAGAACTGCAGATCGACTCGTACCTGCGAACTGCTCATCTATACAGTCATGAACTTGGTGGATGAATCCATAGCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.56

Weight (kDa)

7.58

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 148
AfaI GTAC 1 cut(s) 331
AfiI CCNNNNNNNGG 2 cut(s) 193, 265
AgsI TTSAA 4 cut(s) 37, 44, 176, 248
Alw26I GTCTC 1 cut(s) 120
AlwNI CAGNNNCTG 1 cut(s) 158
Ama87I CYCGRG 2 cut(s) 222, 294
AvaI CYCGRG 2 cut(s) 222, 294
BanI GGYRCC 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 120
BfmI CTRYAG 2 cut(s) 166, 316
BfuAI ACCTGC 1 cut(s) 341
BmeT110I CYCGRG 2 cut(s) 222, 294
BmiI GGNNCC 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 299
BmuI ACTGGG 1 cut(s) 299
BpmI CTGGAG 1 cut(s) 126
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 265
Bse1I ACTGG 2 cut(s) 109, 305
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 2 cut(s) 193, 265
BseNI ACTGG 2 cut(s) 109, 305
BsgI GTGCAG 1 cut(s) 329
BshNI GGYRCC 1 cut(s) 148
BsiHKCI CYCGRG 2 cut(s) 222, 294
BslI CCNNNNNNNGG 2 cut(s) 193, 265
BsmAI GTCTC 1 cut(s) 120
BsoBI CYCGRG 2 cut(s) 222, 294
Bsp143I GATC 1 cut(s) 320
BspHI TCATGA 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 150
BspMAI CTGCAG 1 cut(s) 320
BspMI ACCTGC 1 cut(s) 341
BspT107I GGYRCC 1 cut(s) 148
BsrI ACTGG 2 cut(s) 109, 305
BssMI GATC 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 170, 355
BstDEI CTNAG 5 cut(s) 51, 192, 213, 264, 285
BstENI CCTNNNNNAGG 2 cut(s) 191, 263
BstF5I GGATG 1 cut(s) 376
BstKTI GATC 1 cut(s) 323
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 1 cut(s) 320
BstSFI CTRYAG 2 cut(s) 166, 316
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 2 cut(s) 175, 312
BveI ACCTGC 1 cut(s) 341
CaiI CAGNNNCTG 1 cut(s) 158
CciI TCATGA 1 cut(s) 357
Csp6I GTAC 1 cut(s) 330
CviAII CATG 1 cut(s) 358
CviJI RGCY 2 cut(s) 5, 383
CviKI_1 RGCY 2 cut(s) 5, 383
CviQI GTAC 1 cut(s) 330
DdeI CTNAG 5 cut(s) 51, 192, 213, 264, 285
DpnI GATC 1 cut(s) 322
DpnII GATC 1 cut(s) 320
Eco88I CYCGRG 2 cut(s) 222, 294
EcoNI CCTNNNNNAGG 2 cut(s) 191, 263
FaeI CATG 1 cut(s) 361
FaiI YATR 3 cut(s) 351, 359, 380
FatI CATG 1 cut(s) 357
FokI GGATG 1 cut(s) 383
GsuI CTGGAG 1 cut(s) 126
Hin1II CATG 1 cut(s) 361
HinfI GANTC 4 cut(s) 40, 300, 325, 374
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 4 cut(s) 37, 208, 224, 358
HpyAV CCTTC 3 cut(s) 86, 170, 242
HpyCH4III ACNGT 2 cut(s) 170, 355
HpyCH4V TGCA 5 cut(s) 58, 137, 231, 310, 318
HpyF3I CTNAG 5 cut(s) 51, 192, 213, 264, 285
Hsp92II CATG 1 cut(s) 361
Kzo9I GATC 1 cut(s) 320
LpnPI CCDG 7 cut(s) 66, 90, 131, 165, 171, 318, 346
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 322
MboI GATC 1 cut(s) 320
MfeI CAATTG 1 cut(s) 385
MluCI AATT 3 cut(s) 76, 232, 385
MlyI GAGTC 1 cut(s) 319
MmeI TCCRAC 3 cut(s) 65, 96, 166
MnlI CCTC 4 cut(s) 101, 197, 269, 290
MunI CAATTG 1 cut(s) 385
NdeII GATC 1 cut(s) 320
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 1 cut(s) 150
PaeR7I CTCGAG 2 cut(s) 222, 294
PagI TCATGA 1 cut(s) 357
PfeI GAWTC 3 cut(s) 40, 300, 374
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 150
PspXI VCTCGAGB 1 cut(s) 294
PstI CTGCAG 1 cut(s) 320
PstNI CAGNNNCTG 1 cut(s) 158
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
Sau3AI GATC 1 cut(s) 320
SchI GAGTC 1 cut(s) 319
SetI ASST 5 cut(s) 150, 160, 189, 261, 335
SfcI CTRYAG 2 cut(s) 166, 316
Sfr274I CTCGAG 2 cut(s) 222, 294
SlaI CTCGAG 2 cut(s) 222, 294
SmlI CTYRAG 2 cut(s) 222, 294
SmoI CTYRAG 2 cut(s) 222, 294
Sse9I AATT 3 cut(s) 76, 232, 385
TaaI ACNGT 2 cut(s) 170, 355
TaqI TCGA 3 cut(s) 223, 295, 323
TasI AATT 3 cut(s) 76, 232, 385
TfiI GAWTC 3 cut(s) 40, 300, 374
TscAI CASTG 2 cut(s) 175, 312
TspDTI ATGAA 4 cut(s) 56, 267, 374, 387
TspRI CASTG 2 cut(s) 175, 312
XagI CCTNNNNNAGG 2 cut(s) 191, 263
XhoI CTCGAG 2 cut(s) 222, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.