Rmu_sc0009674.1_g000009
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009674.1
OG0000146
Physical Location & Seq
Reverse (-)
40744 .. 41672
929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009674.1_g000009.1.cds

Sequence Viewer

Length: 570 bp
atgggatatgtgaatggcacaattgaagcaccagatgagaatgacctagggttcggaaagtgggagaactcaaatggttctgtgatctccatcctctacaaatcaatgaccgatgagatgactcaaactggacaacatgtgtccctttattttgctgctttgaagaacatctggttggagattgatcagaggcgccctaataaggtgaagaatgctgatgacatcaagctgcacaatgaggagaaagatttgttgcgggtgaacatatttctgaatggacttgattctaagcatgttagtgcaaaagggcacattaaagctaaatgtcacaagctgaatggatatcctacatcttggagaaaaccagcacctaatcaacaaggacgtgctacagctcatttagtccaaaatcttgattgctatggtgtggaggggcgagatcacacaaatgcacctggtaatccttccgtatccatggttggacaaggtaagattggtgttgcttacatatttctgattttgttggggaagatacctggatcattgattctggggcatcagaccatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.87

Weight (kDa)

8.8

Isoelectric Point (pI)

27.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 192
AciI CCGC 1 cut(s) 256
AclWI GGATC 1 cut(s) 547
AcyI GRCGYC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 202
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 2 cut(s) 26, 163
AjiI CACGTC 1 cut(s) 386
AjnI CCWGG 2 cut(s) 454, 535
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AluBI AGCT 4 cut(s) 229, 320, 334, 395
AluI AGCT 4 cut(s) 229, 320, 334, 395
AlwI GGATC 1 cut(s) 547
ApeKI GCWGC 2 cut(s) 155, 229
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AspA2I CCTAGG 1 cut(s) 46
AspLEI GCGC 1 cut(s) 195
AsuHPI GGTGA 2 cut(s) 217, 271
AvrII CCTAGG 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 312
BanI GGYRCC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 142, 216
BccI CCATC 1 cut(s) 98
BciT130I CCWGG 2 cut(s) 456, 537
BciVI GTATCC 1 cut(s) 481
BclI TGATCA 1 cut(s) 184
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 390
BfoI RGCGCY 1 cut(s) 196
BfuI GTATCC 1 cut(s) 481
BisI GCNGC 2 cut(s) 156, 230
BlnI CCTAGG 1 cut(s) 46
BlsI GCNGC 2 cut(s) 157, 231
Bme1390I CCNGG 2 cut(s) 456, 537
BmgBI CACGTC 1 cut(s) 386
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 2 cut(s) 456, 537
BmsI GCATC 1 cut(s) 565
BsaBI GATNNNNATC 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 193
BsaJI CCNNGG 2 cut(s) 46, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse1I ACTGG 1 cut(s) 133
Bse8I GATNNNNATC 1 cut(s) 89
BseBI CCWGG 2 cut(s) 456, 537
BseDI CCNNGG 2 cut(s) 46, 474
BseGI GGATG 1 cut(s) 90
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 1 cut(s) 312
BseXI GCAGC 2 cut(s) 142, 216
BsgI GTGCAG 1 cut(s) 215
BshNI GGYRCC 1 cut(s) 192
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 127
BsmI GAATGC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 4 cut(s) 84, 184, 439, 539
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 194
BspPI GGATC 1 cut(s) 547
BspT107I GGYRCC 1 cut(s) 192
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 46, 474
BssMI GATC 4 cut(s) 84, 184, 439, 539
BssNI GRCGYC 1 cut(s) 193
BssT1I CCWWGG 2 cut(s) 46, 474
Bst2UI CCWGG 2 cut(s) 456, 537
BstACI GRCGYC 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 288
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 196
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 4 cut(s) 87, 187, 442, 542
BstMBI GATC 4 cut(s) 84, 184, 439, 539
BstNI CCWGG 2 cut(s) 456, 537
BstNSI RCATGY 2 cut(s) 140, 296
BstSCI CCNGG 2 cut(s) 454, 535
BstSFI CTRYAG 1 cut(s) 390
BstSLI GKGCMC 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 142, 216
BsuI GTATCC 1 cut(s) 481
BtgI CCRYGG 1 cut(s) 474
BtrI CACGTC 1 cut(s) 386
BtsCI GGATG 1 cut(s) 90
CfoI GCGC 1 cut(s) 195
CsiI ACCWGGT 1 cut(s) 454
CviAII CATG 3 cut(s) 137, 293, 475
CviJI RGCY 4 cut(s) 229, 320, 334, 395
CviKI_1 RGCY 4 cut(s) 229, 320, 334, 395
DdeI CTNAG 1 cut(s) 288
DinI GGCGCC 1 cut(s) 194
DpnI GATC 4 cut(s) 86, 186, 441, 541
DpnII GATC 4 cut(s) 84, 184, 439, 539
Eco130I CCWWGG 2 cut(s) 46, 474
Eco32I GATATC 1 cut(s) 344
EcoRII CCWGG 2 cut(s) 454, 535
EcoRV GATATC 1 cut(s) 344
EcoT14I CCWWGG 2 cut(s) 46, 474
EgeI GGCGCC 1 cut(s) 194
EheI GGCGCC 1 cut(s) 194
ErhI CCWWGG 2 cut(s) 46, 474
FaeI CATG 3 cut(s) 140, 296, 478
FaiI YATR 9 cut(s) 9, 138, 266, 294, 423, 476, 509, 566, 568
FaqI GGGAC 1 cut(s) 127
FatI CATG 3 cut(s) 136, 292, 474
FauI CCCGC 1 cut(s) 249
FauNDI CATATG 1 cut(s) 566
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 156, 230
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 2 cut(s) 156, 230
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 194
GluI GCNGC 2 cut(s) 156, 230
HaeII RGCGCY 1 cut(s) 196
HhaI GCGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 193
Hin1II CATG 3 cut(s) 140, 296, 478
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HinfI GANTC 3 cut(s) 121, 284, 547
HphI GGTGA 2 cut(s) 217, 271
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 5 cut(s) 56, 189, 273, 516, 561
Hpy188III TCNNGA 1 cut(s) 413
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 1 cut(s) 474
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 3 cut(s) 232, 302, 452
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 385
Hsp92I GRCGYC 1 cut(s) 193
Hsp92II CATG 3 cut(s) 140, 296, 478
HspAI GCGC 1 cut(s) 193
KasI GGCGCC 1 cut(s) 192
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 4 cut(s) 84, 184, 439, 539
LpnPI CCDG 9 cut(s) 45, 114, 157, 378, 441, 468, 522, 536, 549
Lsp1109I GCAGC 2 cut(s) 142, 216
LweI GCATC 1 cut(s) 565
MabI ACCWGGT 1 cut(s) 454
MaeI CTAG 1 cut(s) 47
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 1 cut(s) 326
MalI GATC 4 cut(s) 86, 186, 441, 541
MboI GATC 4 cut(s) 84, 184, 439, 539
MboII GAAGA 3 cut(s) 175, 220, 541
MfeI CAATTG 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 1 cut(s) 21
Mly113I GGCGCC 1 cut(s) 193
MlyI GAGTC 1 cut(s) 115
MmeI TCCRAC 2 cut(s) 156, 460
MnlI CCTC 4 cut(s) 104, 183, 232, 424
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 2 cut(s) 297, 447
MspR9I CCNGG 2 cut(s) 456, 537
MunI CAATTG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 2 cut(s) 456, 537
NarI GGCGCC 1 cut(s) 193
NcoI CCATGG 1 cut(s) 474
NdeI CATATG 1 cut(s) 566
NdeII GATC 4 cut(s) 84, 184, 439, 539
NlaIII CATG 3 cut(s) 140, 296, 478
NlaIV GGNNCC 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 326
NspI RCATGY 2 cut(s) 140, 296
PciI ACATGT 1 cut(s) 136
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 284, 547
PkrI GCNGC 2 cut(s) 157, 231
PleI GAGTC 1 cut(s) 115
PluTI GGCGCC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 115
PscI ACATGT 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 454, 535
PspGI CCWGG 2 cut(s) 454, 535
PspN4I GGNNCC 1 cut(s) 194
RseI CAYNNNNRTG 2 cut(s) 297, 447
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 2 cut(s) 156, 230
Sau3AI GATC 4 cut(s) 84, 184, 439, 539
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 2 cut(s) 456, 537
SduI GDGCHC 1 cut(s) 312
SexAI ACCWGGT 1 cut(s) 454
SfaNI GCATC 1 cut(s) 565
SfcI CTRYAG 1 cut(s) 390
SfoI GGCGCC 1 cut(s) 194
SmiMI CAYNNNNRTG 2 cut(s) 297, 447
Sse9I AATT 1 cut(s) 21
SsiI CCGC 1 cut(s) 256
SspDI GGCGCC 1 cut(s) 192
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 454, 535
StyI CCWWGG 2 cut(s) 46, 474
TaiI ACGT 1 cut(s) 388
TaqII GACCGA 1 cut(s) 125
TasI AATT 1 cut(s) 21
TfiI GAWTC 2 cut(s) 284, 547
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 2 cut(s) 155, 229
Tsp45I GTSAC 1 cut(s) 326
TspGWI ACGGA 1 cut(s) 457
XceI RCATGY 2 cut(s) 140, 296
XmaJI CCTAGG 1 cut(s) 46
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.