Rmu_sc0005878.1_g000012
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005878.1
OG0000146
Physical Location & Seq
Forward (+)
47367 .. 49549
2183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005878.1_g000012.1.cds

Sequence Viewer

Length: 735 bp
atggtggatttgactcttaccgacgggaatactggaggatctcagaatggaggggtgaactctgtggcccgtgaggttgtgattgttcagaatgtgacagataattcaacaagacttgctgcaggaccaaaagccgataaatgggatacgacaaatactaatgtgatgggaattcttctcaaggctatgactccggaggtaatgagattatttgctaactatgattctcccaaagcaatttgggattctgttgctgctacatattatgatgggagtgactttgctcgtgttcatgaattgaatgtcaaagctttcaaaataactcagagtggacagcctgttgcaaccttttatgcaaatttgaagacaatttggcaggagcttgatcaaagaaaccctaatcctatgatttgtgaagttgatattaattcctatcggactgagcaggacaagatgcgtgtccatatttttcttgctggcctggaccctcactttgaaggggcaaagaatgagttattgcgtcttgcaactccacctacattggaacaagcttttgcctatatccgaagagatgaaggttacaaatgttatcatcctcaatcccagaagttttatgtcaccatggatgttacgttcagtgaagatgcatgttatttttttcctcctgtgactcctcgtcagggggagaagtcttgttattatgaagatttgtttagtggcaagatgggagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

244

Amino Acids

27.5

Weight (kDa)

5.17

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 193
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 2 cut(s) 171, 358
AfiI CCNNNNNNNGG 2 cut(s) 141, 680
AgsI TTSAA 5 cut(s) 108, 301, 316, 364, 497
AhdI GACNNNNNGTC 1 cut(s) 675
AjnI CCWGG 1 cut(s) 480
AloI GAACNNNNNNTCC 2 cut(s) 617, 649
AluBI AGCT 3 cut(s) 311, 382, 551
AluI AGCT 3 cut(s) 311, 382, 551
Alw26I GTCTC 1 cut(s) 723
AlwI GGATC 1 cut(s) 46
Aor13HI TCCGGA 1 cut(s) 193
AoxI GGCC 2 cut(s) 66, 478
ApeKI GCWGC 2 cut(s) 119, 254
ApoI RAATTY 2 cut(s) 171, 358
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
AseI ATTAAT 1 cut(s) 426
AspS9I GGNCC 3 cut(s) 67, 125, 484
AsuHPI GGTGA 2 cut(s) 67, 610
AvaII GGWCC 2 cut(s) 125, 484
BauI CACGAG 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 371
BbvI GCAGC 2 cut(s) 106, 241
BccI CCATC 3 cut(s) 160, 263, 718
BciT130I CCWGG 1 cut(s) 482
BciVI GTATCC 1 cut(s) 139
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 723
BfaI CTAG 1 cut(s) 733
BfmI CTRYAG 1 cut(s) 120
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 2 cut(s) 120, 255
BlsI GCNGC 2 cut(s) 121, 256
Bme1390I CCNGG 1 cut(s) 482
Bme18I GGWCC 2 cut(s) 125, 484
BmeRI GACNNNNNGTC 1 cut(s) 675
BmgT120I GGNCC 3 cut(s) 67, 125, 484
BmiI GGNNCC 1 cut(s) 486
BmrFI CCNGG 1 cut(s) 482
BmsI GCATC 2 cut(s) 444, 634
BpiI GAAGAC 1 cut(s) 371
BpmI CTGGAG 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 621
BsaWI WCCGGW 1 cut(s) 193
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 680
Bse1I ACTGG 1 cut(s) 37
BseAI TCCGGA 1 cut(s) 193
BseBI CCWGG 1 cut(s) 482
BseDI CCNNGG 1 cut(s) 621
BseGI GGATG 2 cut(s) 592, 631
BseLI CCNNNNNNNGG 2 cut(s) 141, 680
BseMII CTCAG 3 cut(s) 56, 338, 432
BseNI ACTGG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 663
BseXI GCAGC 2 cut(s) 106, 241
BshFI GGCC 2 cut(s) 68, 480
BsiSI CCGG 1 cut(s) 194
BslI CCNNNNNNNGG 2 cut(s) 141, 680
BsmAI GTCTC 1 cut(s) 723
BsnI GGCC 2 cut(s) 68, 480
Bsp13I TCCGGA 1 cut(s) 193
Bsp143I GATC 2 cut(s) 38, 385
Bsp19I CCATGG 1 cut(s) 621
BspANI GGCC 2 cut(s) 68, 480
BspCNI CTCAG 3 cut(s) 55, 337, 433
BspEI TCCGGA 1 cut(s) 193
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 486
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 621
BssMI GATC 2 cut(s) 38, 385
BssSI CACGAG 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 621
Bst2BI CACGAG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 482
Bst6I CTCTTC 1 cut(s) 562
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 3 cut(s) 42, 324, 441
BstDSI CCRYGG 1 cut(s) 621
BstF5I GGATG 2 cut(s) 592, 631
BstKTI GATC 2 cut(s) 41, 388
BstMAI GTCTC 1 cut(s) 723
BstMBI GATC 2 cut(s) 38, 385
BstNI CCWGG 1 cut(s) 482
BstNSI RCATGY 1 cut(s) 651
BstSCI CCNGG 1 cut(s) 480
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 106, 241
BstV2I GAAGAC 1 cut(s) 371
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 2 cut(s) 68, 480
BtgI CCRYGG 1 cut(s) 621
BtsCI GGATG 2 cut(s) 592, 631
BtsIMutI CAGTG 1 cut(s) 643
Cac8I GCNNGC 1 cut(s) 478
CciI TCATGA 1 cut(s) 292
Cfr13I GGNCC 3 cut(s) 67, 125, 484
CseI GACGC 1 cut(s) 509
CspCI CAANNNNNGTGG 2 cut(s) 522, 557
CviAII CATG 3 cut(s) 293, 622, 648
CviJI RGCY 8 cut(s) 68, 134, 185, 311, 337, 382, 480, 551
CviKI_1 RGCY 8 cut(s) 68, 134, 185, 311, 337, 382, 480, 551
DdeI CTNAG 3 cut(s) 42, 324, 441
DpnI GATC 2 cut(s) 40, 387
DpnII GATC 2 cut(s) 38, 385
DriI GACNNNNNGTC 1 cut(s) 675
Eam1104I CTCTTC 1 cut(s) 562
Eam1105I GACNNNNNGTC 1 cut(s) 675
EarI CTCTTC 1 cut(s) 562
Eco130I CCWWGG 1 cut(s) 621
Eco47I GGWCC 2 cut(s) 125, 484
EcoRI GAATTC 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 480
EcoT14I CCWWGG 1 cut(s) 621
EcoT22I ATGCAT 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 621
FaeI CATG 3 cut(s) 296, 625, 651
FatI CATG 3 cut(s) 292, 621, 647
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 120, 255
FokI GGATG 2 cut(s) 579, 638
Fsp4HI GCNGC 2 cut(s) 120, 255
FspBI CTAG 1 cut(s) 733
GluI GCNGC 2 cut(s) 120, 255
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 2 cut(s) 68, 480
HapII CCGG 1 cut(s) 194
HgaI GACGC 1 cut(s) 509
Hin1II CATG 3 cut(s) 296, 625, 651
HindIII AAGCTT 2 cut(s) 309, 549
HinfI GANTC 5 cut(s) 13, 190, 224, 245, 670
HpaII CCGG 1 cut(s) 194
HphI GGTGA 2 cut(s) 67, 610
Hpy166II GTNNAC 2 cut(s) 58, 332
Hpy188I TCNGA 5 cut(s) 45, 90, 327, 438, 566
Hpy188III TCNNGA 2 cut(s) 194, 293
Hpy8I GTNNAC 2 cut(s) 58, 332
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 2 cut(s) 491, 569
HpyCH4IV ACGT 1 cut(s) 632
HpyCH4V TGCA 5 cut(s) 122, 344, 356, 527, 647
HpyF3I CTNAG 3 cut(s) 42, 324, 441
HpySE526I ACGT 1 cut(s) 632
Hsp92II CATG 3 cut(s) 296, 625, 651
Kpn2I TCCGGA 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 2 cut(s) 38, 385
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 2 cut(s) 106, 241
LweI GCATC 2 cut(s) 444, 634
MaeI CTAG 1 cut(s) 733
MaeII ACGT 1 cut(s) 632
MaeIII GTNAC 6 cut(s) 94, 275, 578, 616, 628, 667
MalI GATC 2 cut(s) 40, 387
MboI GATC 2 cut(s) 38, 385
MboII GAAGA 5 cut(s) 167, 376, 579, 653, 716
MflI RGATCY 1 cut(s) 38
MluCI AATT 7 cut(s) 103, 171, 237, 296, 358, 369, 427
MlyI GAGTC 3 cut(s) 7, 184, 664
MnlI CCTC 8 cut(s) 29, 44, 67, 190, 498, 606, 672, 684
Mph1103I ATGCAT 1 cut(s) 649
MroI TCCGGA 1 cut(s) 193
MseI TTAA 1 cut(s) 426
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 482
MvaI CCWGG 1 cut(s) 482
NcoI CCATGG 1 cut(s) 621
NdeII GATC 2 cut(s) 38, 385
NlaIII CATG 3 cut(s) 296, 625, 651
NlaIV GGNNCC 1 cut(s) 486
NmuCI GTSAC 4 cut(s) 94, 275, 616, 667
NsiI ATGCAT 1 cut(s) 649
NspI RCATGY 1 cut(s) 651
PagI TCATGA 1 cut(s) 292
PfeI GAWTC 2 cut(s) 224, 245
PkrI GCNGC 2 cut(s) 121, 256
PleI GAGTC 3 cut(s) 7, 184, 664
PpsI GAGTC 3 cut(s) 7, 184, 664
PshBI ATTAAT 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 480
PspGI CCWGG 1 cut(s) 480
PspN4I GGNNCC 1 cut(s) 486
PspPI GGNCC 3 cut(s) 67, 125, 484
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 1 cut(s) 38
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 2 cut(s) 120, 255
Sau3AI GATC 2 cut(s) 38, 385
Sau96I GGNCC 3 cut(s) 67, 125, 484
SchI GAGTC 3 cut(s) 7, 184, 664
ScrFI CCNGG 1 cut(s) 482
SetI ASST 9 cut(s) 78, 201, 313, 350, 384, 538, 553, 580, 635
SfaNI GCATC 2 cut(s) 444, 634
SfcI CTRYAG 1 cut(s) 120
SinI GGWCC 2 cut(s) 125, 484
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 7 cut(s) 103, 171, 237, 296, 358, 369, 427
SspMI CTAG 1 cut(s) 733
StyD4I CCNGG 1 cut(s) 480
StyI CCWWGG 1 cut(s) 621
TaiI ACGT 1 cut(s) 635
TasI AATT 7 cut(s) 103, 171, 237, 296, 358, 369, 427
TfiI GAWTC 2 cut(s) 224, 245
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 1 cut(s) 643
TseFI GTSAC 4 cut(s) 94, 275, 616, 667
TseI GCWGC 2 cut(s) 119, 254
Tsp45I GTSAC 4 cut(s) 94, 275, 616, 667
TspDTI ATGAA 4 cut(s) 281, 309, 588, 717
TspRI CASTG 1 cut(s) 643
VpaK11BI GGWCC 2 cut(s) 125, 484
VspI ATTAAT 1 cut(s) 426
XapI RAATTY 2 cut(s) 171, 358
XceI RCATGY 1 cut(s) 651
XspI CTAG 1 cut(s) 733
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.