RLG00000009017
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000146
Physical Location & Seq
Forward (+)
45143410 .. 45144400
991 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009017

Sequence Viewer

Length: 663 bp
ATGAAGATCCATATTCAGGGGATTGGAAAGTGGAGTTATGTTACCGGTAGTGCAGCAAGACCTGCTGCAGGACCAAAAGCCGATGAATGGGATACGGCAAATACTAATGTGATGGGAATTCTTCTCAAGGCTATGACTCCGGAGGTAATGAGATTATTTGCTAACTATGATTCTCCCAAAGAAATTTGGGATTCTGTTGCTGCTACATATTATGATGGGAGTGACTTTACTCGTGTTCATGAATTGAATGTCAAAGCTTTCAAAATAACTCAGAGTGGACAGCCTGTTGGAACTTTTTATGCGAATTTGAAGACAATTTGGCAGGAGCTTGATCAGAGAAACCCTAATCCTATGACTTGTGAAGTTGATATTAATTCCTATCGGACTGAGCAGGACAAGATGCGTGTCCATATTTTTCTTGCTGGCCTGGACCCTCACTTTGAAGGGGCAAAGAATGAGTTATTGCGTCTTGCAACTCCACCTACATTGGAACAAGCTTTTGCCTATATCCGAAAAGATGAAGGTAATAAGGCTGCCGCTCAGAACCTTCATACTGAAATTTCTGGTTTAGCAATCCATGCTACACCTCCACCTCCACCTCAACCTCAGATTGGGAATTCTACCCTAGTTTCATCTCAGAGTCAGTATCAGCCACGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

221

Amino Acids

24.5

Weight (kDa)

6.3

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 1 - 112 1.9e-06 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 70
AccBSI CCGCTC 1 cut(s) 539
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 1 cut(s) 537
AcsI RAATTY 5 cut(s) 117, 183, 304, 558, 616
AfiI CCNNNNNNNGG 4 cut(s) 16, 68, 87, 611
AgeI ACCGGT 1 cut(s) 44
AgsI TTSAA 4 cut(s) 247, 262, 310, 443
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 3 cut(s) 257, 328, 497
AluI AGCT 3 cut(s) 257, 328, 497
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 4 cut(s) 53, 65, 200, 533
ApoI RAATTY 5 cut(s) 117, 183, 304, 558, 616
ArsI GACNNNNNNTTYG 2 cut(s) 422, 454
AseI ATTAAT 1 cut(s) 372
AsiGI ACCGGT 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 71, 430
AvaII GGWCC 2 cut(s) 71, 430
BauI CACGAG 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 317
BbvI GCAGC 4 cut(s) 52, 65, 187, 520
BccI CCATC 2 cut(s) 106, 209
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 428
BciVI GTATCC 1 cut(s) 85
BclI TGATCA 1 cut(s) 331
BfaI CTAG 1 cut(s) 626
BfmI CTRYAG 1 cut(s) 66
BfuAI ACCTGC 1 cut(s) 70
BfuI GTATCC 1 cut(s) 85
BisI GCNGC 5 cut(s) 54, 66, 201, 534, 537
BlsI GCNGC 5 cut(s) 55, 67, 202, 535, 538
Bme1390I CCNGG 1 cut(s) 428
Bme18I GGWCC 2 cut(s) 71, 430
BmgT120I GGNCC 2 cut(s) 71, 430
BmiI GGNNCC 1 cut(s) 432
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 1 cut(s) 390
BpiI GAAGAC 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 653
BsaWI WCCGGW 2 cut(s) 44, 139
Bsc4I CCNNNNNNNGG 4 cut(s) 16, 68, 87, 611
Bse118I RCCGGY 1 cut(s) 44
BseAI TCCGGA 1 cut(s) 139
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 1 cut(s) 653
BseLI CCNNNNNNNGG 4 cut(s) 16, 68, 87, 611
BseMII CTCAG 5 cut(s) 284, 378, 554, 620, 650
BseXI GCAGC 4 cut(s) 52, 65, 187, 520
BsgI GTGCAG 1 cut(s) 72
BshFI GGCC 1 cut(s) 426
BshTI ACCGGT 1 cut(s) 44
BsiSI CCGG 2 cut(s) 45, 140
BslI CCNNNNNNNGG 4 cut(s) 16, 68, 87, 611
BsnI GGCC 1 cut(s) 426
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 2 cut(s) 6, 331
BspACI CCGC 1 cut(s) 537
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 5 cut(s) 283, 379, 553, 619, 649
BspEI TCCGGA 1 cut(s) 139
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 432
BspMAI CTGCAG 1 cut(s) 70
BspMI ACCTGC 1 cut(s) 70
BsrBI CCGCTC 1 cut(s) 539
BsrFI RCCGGY 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 653
BssMI GATC 2 cut(s) 6, 331
BssSI CACGAG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 428
BstAPI GCANNNNNTGC 2 cut(s) 62, 578
BstC8I GCNNGC 1 cut(s) 424
BstDEI CTNAG 5 cut(s) 270, 387, 540, 606, 636
BstDSI CCRYGG 1 cut(s) 653
BstENI CCTNNNNNAGG 1 cut(s) 66
BstKTI GATC 2 cut(s) 9, 334
BstMBI GATC 2 cut(s) 6, 331
BstMWI GCNNNNNNNGC 2 cut(s) 62, 578
BstNI CCWGG 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 426
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 4 cut(s) 52, 65, 187, 520
BstV2I GAAGAC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuI GTATCC 1 cut(s) 85
BsuRI GGCC 1 cut(s) 426
BtgI CCRYGG 1 cut(s) 653
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 424
CciI TCATGA 1 cut(s) 238
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 71, 430
CseI GACGC 1 cut(s) 455
CspAI ACCGGT 1 cut(s) 44
CspCI CAANNNNNGTGG 2 cut(s) 468, 503
CviAII CATG 2 cut(s) 239, 578
CviJI RGCY 9 cut(s) 80, 131, 257, 283, 328, 426, 497, 533, 652
CviKI_1 RGCY 9 cut(s) 80, 131, 257, 283, 328, 426, 497, 533, 652
DdeI CTNAG 5 cut(s) 270, 387, 540, 606, 636
DpnI GATC 2 cut(s) 8, 333
DpnII GATC 2 cut(s) 6, 331
Eco47I GGWCC 2 cut(s) 71, 430
EcoNI CCTNNNNNAGG 1 cut(s) 66
EcoRI GAATTC 2 cut(s) 117, 616
EcoRII CCWGG 1 cut(s) 426
FaeI CATG 2 cut(s) 242, 581
FatI CATG 2 cut(s) 238, 577
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 5 cut(s) 54, 66, 201, 534, 537
Fsp4HI GCNGC 5 cut(s) 54, 66, 201, 534, 537
FspBI CTAG 1 cut(s) 626
GluI GCNGC 5 cut(s) 54, 66, 201, 534, 537
HaeIII GGCC 1 cut(s) 426
HapII CCGG 2 cut(s) 45, 140
HgaI GACGC 1 cut(s) 455
Hin1II CATG 2 cut(s) 242, 581
HindIII AAGCTT 2 cut(s) 255, 495
HinfI GANTC 4 cut(s) 136, 170, 191, 640
HpaII CCGG 2 cut(s) 45, 140
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 7 cut(s) 273, 336, 384, 512, 543, 609, 639
Hpy188III TCNNGA 2 cut(s) 140, 239
Hpy8I GTNNAC 1 cut(s) 278
HpyAV CCTTC 3 cut(s) 437, 515, 557
HpyCH4V TGCA 3 cut(s) 53, 68, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 578
HpyF3I CTNAG 5 cut(s) 270, 387, 540, 606, 636
Hsp92II CATG 2 cut(s) 242, 581
Kpn2I TCCGGA 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 2 cut(s) 6, 331
LmnI GCTCC 1 cut(s) 325
Lsp1109I GCAGC 4 cut(s) 52, 65, 187, 520
LweI GCATC 1 cut(s) 390
MaeI CTAG 1 cut(s) 626
MaeIII GTNAC 2 cut(s) 40, 221
MalI GATC 2 cut(s) 8, 333
MbiI CCGCTC 1 cut(s) 539
MboI GATC 2 cut(s) 6, 331
MboII GAAGA 3 cut(s) 16, 113, 322
MflI RGATCY 1 cut(s) 6
MluCI AATT 9 cut(s) 117, 183, 242, 304, 315, 373, 558, 616, 658
MlyI GAGTC 2 cut(s) 130, 649
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 6 cut(s) 136, 444, 597, 603, 609, 615
MroI TCCGGA 1 cut(s) 139
MseI TTAA 1 cut(s) 372
MspI CCGG 2 cut(s) 45, 140
MspR9I CCNGG 1 cut(s) 428
MvaI CCWGG 1 cut(s) 428
MwoI GCNNNNNNNGC 2 cut(s) 62, 578
NdeII GATC 2 cut(s) 6, 331
NlaIII CATG 2 cut(s) 242, 581
NlaIV GGNNCC 1 cut(s) 432
NmuCI GTSAC 1 cut(s) 221
PagI TCATGA 1 cut(s) 238
PfeI GAWTC 2 cut(s) 170, 191
PinAI ACCGGT 1 cut(s) 44
PkrI GCNGC 5 cut(s) 55, 67, 202, 535, 538
PleI GAGTC 2 cut(s) 130, 648
PpsI GAGTC 2 cut(s) 130, 648
PshBI ATTAAT 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 1 cut(s) 432
PspPI GGNCC 2 cut(s) 71, 430
PstI CTGCAG 1 cut(s) 70
PsuI RGATCY 1 cut(s) 6
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 5 cut(s) 54, 66, 201, 534, 537
Sau3AI GATC 2 cut(s) 6, 331
Sau96I GGNCC 2 cut(s) 71, 430
SchI GAGTC 2 cut(s) 130, 649
ScrFI CCNGG 1 cut(s) 428
SfaNI GCATC 1 cut(s) 390
SfcI CTRYAG 1 cut(s) 66
SinI GGWCC 2 cut(s) 71, 430
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 9 cut(s) 117, 183, 242, 304, 315, 373, 558, 616, 658
SsiI CCGC 1 cut(s) 537
SspMI CTAG 1 cut(s) 626
StyD4I CCNGG 1 cut(s) 426
TasI AATT 9 cut(s) 117, 183, 242, 304, 315, 373, 558, 616, 658
TauI GCSGC 1 cut(s) 539
TfiI GAWTC 2 cut(s) 170, 191
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 4 cut(s) 53, 65, 200, 533
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 7 cut(s) 17, 99, 227, 255, 534, 539, 621
VpaK11BI GGWCC 2 cut(s) 71, 430
VspI ATTAAT 1 cut(s) 372
XagI CCTNNNNNAGG 1 cut(s) 66
XapI RAATTY 5 cut(s) 117, 183, 304, 558, 616
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.