Rmu_sc0000303.1_g000034

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000303.1
OG0000146
Physical Location & Seq
Reverse (-)
200379 .. 205312
4934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000303.1_g000034.1.cds

Sequence Viewer

Length: 729 bp
atgggcttggatccttcaatttacaataaagcccggcccgctattatttcaaaatggagtaaggcccggcccaagcccgctaccaatgggccaggctcggcccggcccgggcatttgatgaggcctaggagaaagaaagacgaaggagagagagaccgactggagggtcacattgctaatctcaagaaagcacaagcaaaagaagtacaagagaaagcaaaatcatttaagccctctgacaatacgaacccaaagagctattggcccaaaggcaaacctcaagcctccctccaacttacttcaccagacctgagttcgagtacagcttctgacgaacctgctcatggtgatcactctggtaactccacttttgccttcatgaccacttcagatacacctttctctttgttgtcggattctaaaatcgctgaaaatggaaatcagctgccaactccagaatcagcagtgagagatatttcctccccttctactaccccatcaacaccaatgcgccctgaggatgatccagagccatgggccaggaacttgatgaagaacaagcagccacgctggtcatcctccgatggcaagatttgggcgagttgccagaaaaacgagctgattattaaggctcccgaaaaggcgagaatggggggtggaagatggtttgcagaagattgctcaagaacaacggtgaatctaggggacgttttgtggaagaatacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.65

Weight (kDa)

9.62

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 165
Acc36I ACCTGC 1 cut(s) 346
AciI CCGC 2 cut(s) 39, 78
AclWI GGATC 3 cut(s) 5, 18, 518
AcuI CTGAAG 1 cut(s) 372
AfaI GTAC 2 cut(s) 207, 322
AfiI CCNNNNNNNGG 3 cut(s) 108, 163, 344
AgsI TTSAA 2 cut(s) 18, 51
AjnI CCWGG 2 cut(s) 91, 539
AluBI AGCT 4 cut(s) 258, 326, 445, 619
AluI AGCT 4 cut(s) 258, 326, 445, 619
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 3 cut(s) 5, 18, 518
AlwNI CAGNNNCTG 1 cut(s) 329
Ama87I CYCGRG 1 cut(s) 107
AoxI GGCC 9 cut(s) 35, 63, 68, 89, 99, 104, 122, 263, 537
ApeKI GCWGC 2 cut(s) 445, 562
AspA2I CCTAGG 1 cut(s) 125
AspLEI GCGC 1 cut(s) 513
AspS9I GGNCC 8 cut(s) 36, 64, 69, 89, 100, 105, 264, 537
AsuC2I CCSGG 5 cut(s) 34, 67, 103, 108, 109
AsuHPI GGTGA 3 cut(s) 294, 359, 706
AvaI CYCGRG 1 cut(s) 107
AvrII CCTAGG 1 cut(s) 125
AxyI CCTNAGG 1 cut(s) 516
BamHI GGATCC 1 cut(s) 10
BbvI GCAGC 2 cut(s) 432, 574
BccI CCATC 3 cut(s) 505, 578, 657
BciT130I CCWGG 2 cut(s) 93, 541
BclI TGATCA 1 cut(s) 349
BcnI CCSGG 5 cut(s) 34, 67, 103, 108, 109
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 2 cut(s) 126, 701
BfuAI ACCTGC 1 cut(s) 346
BisI GCNGC 2 cut(s) 446, 563
BlnI CCTAGG 1 cut(s) 125
BlsI GCNGC 2 cut(s) 447, 564
Bme1390I CCNGG 7 cut(s) 34, 67, 93, 103, 108, 109, 541
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 8 cut(s) 36, 64, 69, 89, 100, 105, 264, 537
BmiI GGNNCC 2 cut(s) 12, 633
BmrFI CCNGG 7 cut(s) 34, 67, 93, 103, 108, 109, 541
BpmI CTGGAG 2 cut(s) 182, 438
BpuEI CTTGAG 3 cut(s) 167, 264, 667
BpuMI CCSGG 5 cut(s) 34, 67, 103, 108, 109
BsaI GGTCTC 1 cut(s) 147
BsaJI CCNNGG 3 cut(s) 107, 125, 533
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 163, 344
Bse1I ACTGG 1 cut(s) 165
Bse21I CCTNAGG 1 cut(s) 516
Bse3DI GCAATG 1 cut(s) 171
BseBI CCWGG 2 cut(s) 93, 541
BseDI CCNNGG 3 cut(s) 107, 125, 533
BseGI GGATG 2 cut(s) 526, 575
BseLI CCNNNNNNNGG 3 cut(s) 108, 163, 344
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 2 cut(s) 302, 507
BseNI ACTGG 1 cut(s) 165
BseXI GCAGC 2 cut(s) 432, 574
BshFI GGCC 9 cut(s) 37, 65, 70, 91, 101, 106, 124, 265, 539
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 4 cut(s) 34, 67, 103, 108
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 3 cut(s) 108, 163, 344
BsmAI GTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 719
BsnI GGCC 9 cut(s) 37, 65, 70, 91, 101, 106, 124, 265, 539
Bso31I GGTCTC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 107
Bsp143I GATC 3 cut(s) 10, 349, 523
Bsp19I CCATGG 1 cut(s) 533
BspACI CCGC 2 cut(s) 39, 78
BspANI GGCC 9 cut(s) 37, 65, 70, 91, 101, 106, 124, 265, 539
BspCNI CTCAG 2 cut(s) 303, 508
BspHI TCATGA 1 cut(s) 378
BspLI GGNNCC 2 cut(s) 12, 633
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 3 cut(s) 5, 18, 518
BspTNI GGTCTC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 171
BsrI ACTGG 1 cut(s) 165
BssECI CCNNGG 3 cut(s) 107, 125, 533
BssMI GATC 3 cut(s) 10, 349, 523
BssT1I CCWWGG 2 cut(s) 125, 533
Bst2UI CCWGG 2 cut(s) 93, 541
Bst4CI ACNGT 1 cut(s) 694
BstC8I GCNNGC 2 cut(s) 39, 78
BstDEI CTNAG 2 cut(s) 311, 516
BstDSI CCRYGG 1 cut(s) 533
BstF5I GGATG 2 cut(s) 526, 575
BstHHI GCGC 1 cut(s) 513
BstKTI GATC 3 cut(s) 13, 352, 526
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 3 cut(s) 10, 349, 523
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 2 cut(s) 93, 541
BstSCI CCNGG 7 cut(s) 32, 65, 91, 101, 106, 107, 539
BstV1I GCAGC 2 cut(s) 432, 574
BstX2I RGATCY 1 cut(s) 10
BstXI CCANNNNNNTGG 1 cut(s) 534
BstYI RGATCY 1 cut(s) 10
Bsu36I CCTNAGG 1 cut(s) 516
BsuRI GGCC 9 cut(s) 37, 65, 70, 91, 101, 106, 124, 265, 539
BtgI CCRYGG 1 cut(s) 533
BtsCI GGATG 2 cut(s) 526, 575
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 1 cut(s) 471
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 2 cut(s) 39, 78
CaiI CAGNNNCTG 1 cut(s) 329
CciI TCATGA 1 cut(s) 378
CfoI GCGC 1 cut(s) 513
Cfr13I GGNCC 8 cut(s) 36, 64, 69, 89, 100, 105, 264, 537
Cfr9I CCCGGG 1 cut(s) 107
Csp6I GTAC 2 cut(s) 206, 321
CviAII CATG 3 cut(s) 344, 379, 534
CviQI GTAC 2 cut(s) 206, 321
DdeI CTNAG 2 cut(s) 311, 516
DpnI GATC 3 cut(s) 12, 351, 525
DpnII GATC 3 cut(s) 10, 349, 523
DrdI GACNNNNNNGTC 1 cut(s) 165
DseDI GACNNNNNNGTC 1 cut(s) 165
Eco130I CCWWGG 2 cut(s) 125, 533
Eco147I AGGCCT 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 372
Eco81I CCTNAGG 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 91, 539
EcoT14I CCWWGG 2 cut(s) 125, 533
ErhI CCWWGG 2 cut(s) 125, 533
FaeI CATG 3 cut(s) 347, 382, 537
FaiI YATR 3 cut(s) 345, 380, 535
FaqI GGGAC 1 cut(s) 719
FatI CATG 3 cut(s) 343, 378, 533
FauI CCCGC 2 cut(s) 46, 85
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 2 cut(s) 446, 563
FokI GGATG 2 cut(s) 533, 562
Fsp4HI GCNGC 2 cut(s) 446, 563
FspBI CTAG 2 cut(s) 126, 701
GlaI GCGC 1 cut(s) 512
GluI GCNGC 2 cut(s) 446, 563
GsuI CTGGAG 2 cut(s) 182, 438
HaeIII GGCC 9 cut(s) 37, 65, 70, 91, 101, 106, 124, 265, 539
HapII CCGG 4 cut(s) 34, 67, 103, 108
HhaI GCGC 1 cut(s) 513
Hin1II CATG 3 cut(s) 347, 382, 537
Hin6I GCGC 1 cut(s) 511
HinP1I GCGC 1 cut(s) 511
HinfI GANTC 3 cut(s) 416, 458, 697
HpaII CCGG 4 cut(s) 34, 67, 103, 108
HphI GGTGA 3 cut(s) 294, 359, 706
Hpy188I TCNGA 5 cut(s) 238, 331, 391, 415, 583
Hpy188III TCNNGA 6 cut(s) 184, 379, 455, 527, 635, 684
HpyAV CCTTC 4 cut(s) 24, 137, 385, 495
HpyCH4III ACNGT 1 cut(s) 694
HpyCH4IV ACGT 1 cut(s) 708
HpyCH4V TGCA 1 cut(s) 671
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 2 cut(s) 311, 516
HpySE526I ACGT 1 cut(s) 708
Hsp92II CATG 3 cut(s) 347, 382, 537
HspAI GCGC 1 cut(s) 511
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 3 cut(s) 10, 349, 523
LmnI GCTCC 1 cut(s) 637
Lsp1109I GCAGC 2 cut(s) 432, 574
MaeI CTAG 2 cut(s) 126, 701
MaeII ACGT 1 cut(s) 708
MaeIII GTNAC 2 cut(s) 167, 359
MalI GATC 3 cut(s) 12, 351, 525
MboI GATC 3 cut(s) 10, 349, 523
MboII GAAGA 3 cut(s) 565, 672, 686
MflI RGATCY 1 cut(s) 10
MluCI AATT 1 cut(s) 18
MmeI TCCRAC 2 cut(s) 316, 393
MnlI CCTC 9 cut(s) 114, 157, 244, 288, 295, 299, 490, 511, 589
MseI TTAA 2 cut(s) 228, 627
MspA1I CMGCKG 1 cut(s) 445
MspI CCGG 4 cut(s) 34, 67, 103, 108
MspR9I CCNGG 7 cut(s) 34, 67, 93, 103, 108, 109, 541
MvaI CCWGG 2 cut(s) 93, 541
MwoI GCNNNNNNNGC 1 cut(s) 38
NciI CCSGG 5 cut(s) 34, 67, 103, 108, 109
NcoI CCATGG 1 cut(s) 533
NdeII GATC 3 cut(s) 10, 349, 523
NlaIII CATG 3 cut(s) 347, 382, 537
NlaIV GGNNCC 2 cut(s) 12, 633
NmeAIII GCCGAG 1 cut(s) 77
NmuCI GTSAC 1 cut(s) 167
PagI TCATGA 1 cut(s) 378
PceI AGGCCT 1 cut(s) 124
PfeI GAWTC 3 cut(s) 416, 458, 697
PkrI GCNGC 2 cut(s) 447, 564
Psp6I CCWGG 2 cut(s) 91, 539
PspGI CCWGG 2 cut(s) 91, 539
PspN4I GGNNCC 2 cut(s) 12, 633
PspPI GGNCC 8 cut(s) 36, 64, 69, 89, 100, 105, 264, 537
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 445
RsaI GTAC 2 cut(s) 207, 322
RsaNI GTAC 2 cut(s) 206, 321
SaqAI TTAA 2 cut(s) 228, 627
SatI GCNGC 2 cut(s) 446, 563
Sau3AI GATC 3 cut(s) 10, 349, 523
Sau96I GGNCC 8 cut(s) 36, 64, 69, 89, 100, 105, 264, 537
ScrFI CCNGG 7 cut(s) 34, 67, 93, 103, 108, 109, 541
SmaI CCCGGG 1 cut(s) 109
SmlI CTYRAG 3 cut(s) 182, 279, 682
SmoI CTYRAG 3 cut(s) 182, 279, 682
SrfI GCCCGGGC 1 cut(s) 109
Sse9I AATT 1 cut(s) 18
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 2 cut(s) 39, 78
SspMI CTAG 2 cut(s) 126, 701
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 7 cut(s) 32, 65, 91, 101, 106, 107, 539
StyI CCWWGG 2 cut(s) 125, 533
TaaI ACNGT 1 cut(s) 694
TaiI ACGT 1 cut(s) 711
TaqI TCGA 1 cut(s) 317
TaqII GACCGA 1 cut(s) 171
TasI AATT 1 cut(s) 18
TatI WGTACW 2 cut(s) 205, 320
TfiI GAWTC 3 cut(s) 416, 458, 697
Tru1I TTAA 2 cut(s) 228, 627
Tru9I TTAA 2 cut(s) 228, 627
TscAI CASTG 1 cut(s) 471
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 2 cut(s) 445, 562
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 2 cut(s) 367, 566
TspMI CCCGGG 1 cut(s) 107
TspRI CASTG 1 cut(s) 471
XcmI CCANNNNNNNNNTGG 1 cut(s) 258
XmaI CCCGGG 1 cut(s) 107
XmaJI CCTAGG 1 cut(s) 125
XspI CTAG 2 cut(s) 126, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.