Prupe.4G247600_v2.0.a1
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000146
Physical Location & Seq
Reverse (-)
16478993 .. 16479643
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G247600.1

Sequence Viewer

Length: 522 bp
ATGGCACAAGTGGAGGAAGACGCTCCAGGCTTTGATTTGTGGTGTATTGAGGACTCCATTGTTAAAGGATGGTTGATAAAAATTATGGAACCTGATTTGGTAGAATTGTTCTTAGATCTACCAACAACTGAAGATAGTTTTTGGTTGGAACAAGACCGTCGTCGTCCAATCAACATGAAATGCCCTGATGATGTGAAGATTCGACAGACTGAGATACAGAAAGACAGTATTTATGAATTTCATGCAGGTCTATATGATGAGTTAGATAAAATTAGAGGAGATTTGTTGAGGTTGAGTCCATTGTCAAAATTAGGGGAGTCGTTTTCTTTTGTTGGTAAAAAGGCCCAACATCGAGAGACGATGCTCAAGAAGGATGCAAAGACTGAATCCTTTGCTGTAATGGTTTCCAAGCCCCTGCTGCTAGTTTTTCTTTTTCCCATCCAACAACTGAGGAAAAAGAAAATATGCATTGCATTTATTGTAATGGCAGATATGTCACAAACTGAAATTAGGCTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

20.11

Weight (kDa)

5.33

Isoelectric Point (pI)

52.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 236
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 150
AjnI CCWGG 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 350
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 418
ApoI RAATTY 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 405
BccI CCATC 2 cut(s) 63, 446
BciT130I CCWGG 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 1 cut(s) 422
BfuAI ACCTGC 1 cut(s) 236
BglII AGATCT 1 cut(s) 115
BisI GCNGC 1 cut(s) 419
BlsI GCNGC 1 cut(s) 420
Bme1390I CCNGG 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 343
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 27
BmsI GCATC 2 cut(s) 351, 364
BoxI GACNNNNGTC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 24
BpmI CTGGAG 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 468
BseBI CCWGG 1 cut(s) 27
BseGI GGATG 3 cut(s) 74, 379, 438
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 2 cut(s) 201, 440
BseRI GAGGAG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 405
BshFI GGCC 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 350
BsmBI CGTCTC 1 cut(s) 350
BsnI GGCC 1 cut(s) 344
Bsp143I GATC 1 cut(s) 115
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 2 cut(s) 202, 441
BspHI TCATGA 1 cut(s) 518
BspLI GGNNCC 1 cut(s) 90
BspMI ACCTGC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 468
BssMI GATC 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 158, 227
BstDEI CTNAG 3 cut(s) 112, 210, 449
BstF5I GGATG 3 cut(s) 74, 379, 438
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 418
BstNI CCWGG 1 cut(s) 27
BstPAI GACNNNNGTC 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 405
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 1 cut(s) 344
BtsCI GGATG 3 cut(s) 74, 379, 438
BveI ACCTGC 1 cut(s) 236
CciI TCATGA 1 cut(s) 518
Cfr13I GGNCC 1 cut(s) 343
CseI GACGC 1 cut(s) 29
CviAII CATG 3 cut(s) 175, 242, 519
CviJI RGCY 4 cut(s) 30, 344, 412, 514
CviKI_1 RGCY 4 cut(s) 30, 344, 412, 514
DdeI CTNAG 3 cut(s) 112, 210, 449
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 25
EcoT22I ATGCAT 1 cut(s) 470
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 3 cut(s) 178, 245, 522
FaiI YATR 9 cut(s) 86, 176, 234, 243, 253, 255, 466, 494, 520
FatI CATG 3 cut(s) 174, 241, 518
Fnu4HI GCNGC 1 cut(s) 419
FokI GGATG 3 cut(s) 81, 386, 425
Fsp4HI GCNGC 1 cut(s) 419
FspBI CTAG 1 cut(s) 422
GluI GCNGC 1 cut(s) 419
GsuI CTGGAG 1 cut(s) 9
HaeIII GGCC 1 cut(s) 344
HgaI GACGC 1 cut(s) 29
Hin1II CATG 3 cut(s) 178, 245, 522
HinfI GANTC 5 cut(s) 53, 199, 295, 317, 386
Hpy188III TCNNGA 3 cut(s) 353, 367, 519
Hpy99I CGWCG 2 cut(s) 162, 165
HpyAV CCTTC 1 cut(s) 364
HpyCH4III ACNGT 2 cut(s) 158, 227
HpyCH4V TGCA 4 cut(s) 245, 377, 468, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 418
HpyF3I CTNAG 3 cut(s) 112, 210, 449
Hsp92II CATG 3 cut(s) 178, 245, 522
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 6 cut(s) 12, 39, 105, 198, 231, 428
Lsp1109I GCAGC 1 cut(s) 405
LweI GCATC 2 cut(s) 351, 364
MaeI CTAG 1 cut(s) 422
MaeIII GTNAC 1 cut(s) 495
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 3 cut(s) 29, 143, 208
MflI RGATCY 1 cut(s) 115
MluCI AATT 6 cut(s) 81, 104, 236, 270, 308, 507
MlyI GAGTC 3 cut(s) 47, 304, 326
MmeI TCCRAC 2 cut(s) 126, 466
MnlI CCTC 5 cut(s) 7, 43, 269, 282, 444
Mph1103I ATGCAT 1 cut(s) 470
MseI TTAA 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 418
NdeII GATC 1 cut(s) 115
NlaIII CATG 3 cut(s) 178, 245, 522
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 495
NsiI ATGCAT 1 cut(s) 470
PagI TCATGA 1 cut(s) 518
PfeI GAWTC 2 cut(s) 199, 386
PkrI GCNGC 1 cut(s) 420
PleI GAGTC 3 cut(s) 47, 303, 325
PpsI GAGTC 3 cut(s) 47, 303, 325
PshAI GACNNNNGTC 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 343
PsuI RGATCY 1 cut(s) 115
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 419
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 1 cut(s) 343
SchI GAGTC 3 cut(s) 47, 304, 326
ScrFI CCNGG 1 cut(s) 27
SetI ASST 3 cut(s) 94, 250, 293
SfaNI GCATC 2 cut(s) 351, 364
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 6 cut(s) 81, 104, 236, 270, 308, 507
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 25
TaaI ACNGT 2 cut(s) 158, 227
TaqI TCGA 2 cut(s) 202, 352
TasI AATT 6 cut(s) 81, 104, 236, 270, 308, 507
TfiI GAWTC 2 cut(s) 199, 386
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TseFI GTSAC 1 cut(s) 495
TseI GCWGC 1 cut(s) 418
Tsp45I GTSAC 1 cut(s) 495
TspDTI ATGAA 4 cut(s) 191, 230, 249, 507
XapI RAATTY 1 cut(s) 236
XspI CTAG 1 cut(s) 422
Zsp2I ATGCAT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.