Prupe.1G090900_v2.0.a1
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000146
Physical Location & Seq
Reverse (-)
6830841 .. 6833070
2230 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G090900.1

Sequence Viewer

Length: 945 bp
ATGACCTACAAGAGAAAAGGGGGAGAGAATGTTGAAAATCTCTCTTTAGTCGCTAGCAAAATGTTGTCATCGCCACCGAATCTTCTGTTGCCACCGCCATCTATCACCGTGCCGGATGTCACTGAATCTTCTTCTTTTACTCCTATTATGACGGTTCATACCGAATTGTCCACCAATCTACCTATGGGATTCAAATTGAATGGATCCAACTATGAGATATGGGCTTTGATGATCGAACTCCATGATACTACACAAGGCAAATTGGGTTACCTGACTGGCGACACTGACGCCCCTGATTCCCAAGACCCACAATTTGGGAAGTGGAAAATTGTTGATGCTATTGTGAAAAGTTCGATGTTGCGAACTGTGAAATCCAATTTGTTGAATATGTTTCATACTTTACCTACTGCTAAGGAAATTTGGGATGCTGTTAATCAAATGTTTTATGATGTCTCTAACATATCTCAGCTCTATGAACTACAGTGCCAGAGTGATAAAGTTCCAAGTATCGAAAATGTATTTTTTATGGTCCGTCGAGAGGCTCAACGCCAGATTACTAAGCTTGGATCCGGCACCAAGATTGGGGAACATGTTGTTGTGTTTGCTTCCAAAAACACTGCTCTGGTTTCTCGGCCTAAGGGAAAAGACAAACTGAAGTGTGATCACTATGGTGAAAAGAAACATACTATCGACACCTGCTGGGCATTGCATGGGGCACCAGATTGGGAGAAGGAGCATAAGCGTTTAAAAAAGGAACAACTGGACAACAAAGCTCATGTGGCTGTTGCCGCCACTTCTATGGCTGACATCACCACTGGACATGACCACCTTACTGCTACTCATCCTCCGACCTTGACCGAGGTCTCAAGCACTCCAACACCGCCGCCCCCAAATAACTTTGGCAAGGGCGCTTTCCATGCCCATGATACATGCGATACAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

315

Amino Acids

34.82

Weight (kDa)

6.7

Isoelectric Point (pI)

32.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 704
Acc36I ACCTGC 1 cut(s) 704
AccB1I GGYRCC 2 cut(s) 572, 715
AccB7I CCANNNNNTGG 1 cut(s) 314
AciI CCGC 4 cut(s) 95, 789, 881, 884
AclWI GGATC 4 cut(s) 198, 211, 561, 574
AcsI RAATTY 1 cut(s) 417
AcuI CTGAAG 1 cut(s) 674
AcyI GRCGYC 1 cut(s) 288
AfiI CCNNNNNNNGG 3 cut(s) 314, 538, 582
AflIII ACRYGT 1 cut(s) 589
AgsI TTSAA 4 cut(s) 35, 193, 199, 385
AleI CACNNNNGTG 1 cut(s) 669
AluBI AGCT 3 cut(s) 469, 562, 773
AluI AGCT 3 cut(s) 469, 562, 773
Alw26I GTCTC 2 cut(s) 457, 868
AlwI GGATC 4 cut(s) 198, 211, 561, 574
AoxI GGCC 1 cut(s) 632
ApoI RAATTY 1 cut(s) 417
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
AspLEI GCGC 1 cut(s) 911
AspS9I GGNCC 1 cut(s) 529
AsuHPI GGTGA 3 cut(s) 97, 683, 802
AsuNHI GCTAGC 1 cut(s) 53
AvaII GGWCC 1 cut(s) 529
AxyI CCTNAGG 1 cut(s) 636
BaeGI GKGCMC 1 cut(s) 718
BamHI GGATCC 2 cut(s) 203, 566
BanI GGYRCC 2 cut(s) 572, 715
BccI CCATC 1 cut(s) 106
BclI TGATCA 1 cut(s) 661
BcoDI GTCTC 2 cut(s) 457, 868
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 479
BfoI RGCGCY 1 cut(s) 912
BfuAI ACCTGC 1 cut(s) 704
BisI GCNGC 2 cut(s) 789, 884
BlsI GCNGC 2 cut(s) 790, 885
Bme18I GGWCC 1 cut(s) 529
BmgT120I GGNCC 1 cut(s) 529
BmiI GGNNCC 4 cut(s) 205, 568, 574, 717
BmsI GCATC 2 cut(s) 325, 415
BmtI GCTAGC 1 cut(s) 57
BoxI GACNNNNGTC 1 cut(s) 860
Bpu10I CCTNAGC 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 850
BsaHI GRCGYC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 868
BsaJI CCNNGG 1 cut(s) 858
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 829, 859
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 538, 582
Bse1I ACTGG 3 cut(s) 280, 765, 820
Bse21I CCTNAGG 1 cut(s) 636
Bse3DI GCAATG 1 cut(s) 704
BseDI CCNNGG 1 cut(s) 858
BseGI GGATG 3 cut(s) 121, 430, 841
BseLI CCNNNNNNNGG 3 cut(s) 314, 538, 582
BseMI GCAATG 1 cut(s) 704
BseMII CTCAG 1 cut(s) 479
BseNI ACTGG 3 cut(s) 280, 765, 820
BseSI GKGCMC 1 cut(s) 718
BseYI CCCAGC 1 cut(s) 699
BshFI GGCC 1 cut(s) 634
BshNI GGYRCC 2 cut(s) 572, 715
BsiSI CCGG 2 cut(s) 113, 570
BslI CCNNNNNNNGG 3 cut(s) 314, 538, 582
BsmAI GTCTC 2 cut(s) 457, 868
BsnI GGCC 1 cut(s) 634
Bso31I GGTCTC 1 cut(s) 868
Bsp1286I GDGCHC 1 cut(s) 718
Bsp143I GATC 4 cut(s) 203, 231, 566, 661
BspACI CCGC 4 cut(s) 95, 789, 881, 884
BspANI GGCC 1 cut(s) 634
BspCNI CTCAG 1 cut(s) 478
BspLI GGNNCC 4 cut(s) 205, 568, 574, 717
BspMI ACCTGC 1 cut(s) 704
BspOI GCTAGC 1 cut(s) 57
BspPI GGATC 4 cut(s) 198, 211, 561, 574
BspT107I GGYRCC 2 cut(s) 572, 715
BspTNI GGTCTC 1 cut(s) 868
BsrDI GCAATG 1 cut(s) 704
BsrI ACTGG 3 cut(s) 280, 765, 820
BssECI CCNNGG 1 cut(s) 858
BssMI GATC 4 cut(s) 203, 231, 566, 661
BssNI GRCGYC 1 cut(s) 288
Bst4CI ACNGT 4 cut(s) 109, 154, 367, 483
BstACI GRCGYC 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 4 cut(s) 411, 465, 558, 636
BstEII GGTNACC 1 cut(s) 266
BstF5I GGATG 3 cut(s) 121, 430, 841
BstH2I RGCGCY 1 cut(s) 912
BstHHI GCGC 1 cut(s) 911
BstKTI GATC 4 cut(s) 206, 234, 569, 664
BstMAI GTCTC 2 cut(s) 457, 868
BstMBI GATC 4 cut(s) 203, 231, 566, 661
BstMWI GCNNNNNNNGC 3 cut(s) 779, 788, 917
BstNSI RCATGY 2 cut(s) 593, 933
BstPAI GACNNNNGTC 1 cut(s) 860
BstPI GGTNACC 1 cut(s) 266
BstSFI CTRYAG 1 cut(s) 479
BstSLI GKGCMC 1 cut(s) 718
BstX2I RGATCY 2 cut(s) 203, 566
BstXI CCANNNNNNTGG 1 cut(s) 799
BstYI RGATCY 2 cut(s) 203, 566
Bsu36I CCTNAGG 1 cut(s) 636
BsuRI GGCC 1 cut(s) 634
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 3 cut(s) 121, 430, 841
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 5 cut(s) 120, 282, 488, 615, 813
BveI ACCTGC 1 cut(s) 704
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 1 cut(s) 911
Cfr13I GGNCC 1 cut(s) 529
CseI GACGC 1 cut(s) 296
CviAII CATG 8 cut(s) 242, 590, 710, 776, 821, 917, 923, 930
CviJI RGCY 8 cut(s) 224, 469, 542, 562, 634, 773, 782, 803
CviKI_1 RGCY 8 cut(s) 224, 469, 542, 562, 634, 773, 782, 803
DdeI CTNAG 4 cut(s) 411, 465, 558, 636
DpnI GATC 4 cut(s) 205, 233, 568, 663
DpnII GATC 4 cut(s) 203, 231, 566, 661
DraI TTTAAA 1 cut(s) 747
Eco31I GGTCTC 1 cut(s) 868
Eco47I GGWCC 1 cut(s) 529
Eco57I CTGAAG 1 cut(s) 674
Eco81I CCTNAGG 1 cut(s) 636
Eco91I GGTNACC 1 cut(s) 266
EcoO65I GGTNACC 1 cut(s) 266
FaeI CATG 8 cut(s) 245, 593, 713, 779, 824, 920, 926, 933
FatI CATG 8 cut(s) 241, 589, 709, 775, 820, 916, 922, 929
FbaI TGATCA 1 cut(s) 661
Fnu4HI GCNGC 2 cut(s) 789, 884
FokI GGATG 3 cut(s) 128, 437, 828
Fsp4HI GCNGC 2 cut(s) 789, 884
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 910
GluI GCNGC 2 cut(s) 789, 884
GsaI CCCAGC 1 cut(s) 703
HaeII RGCGCY 1 cut(s) 912
HaeIII GGCC 1 cut(s) 634
HapII CCGG 2 cut(s) 113, 570
HgaI GACGC 1 cut(s) 296
HhaI GCGC 1 cut(s) 911
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 8 cut(s) 245, 593, 713, 779, 824, 920, 926, 933
Hin6I GCGC 1 cut(s) 909
HinP1I GCGC 1 cut(s) 909
HindIII AAGCTT 1 cut(s) 560
HinfI GANTC 4 cut(s) 79, 125, 189, 296
HpaII CCGG 2 cut(s) 113, 570
HphI GGTGA 3 cut(s) 97, 683, 802
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 1 cut(s) 849
Hpy188III TCNNGA 1 cut(s) 536
Hpy8I GTNNAC 1 cut(s) 171
Hpy99I CGWCG 1 cut(s) 537
HpyAV CCTTC 1 cut(s) 724
HpyCH4III ACNGT 4 cut(s) 109, 154, 367, 483
HpyCH4V TGCA 1 cut(s) 709
HpyF10VI GCNNNNNNNGC 3 cut(s) 779, 788, 917
HpyF3I CTNAG 4 cut(s) 411, 465, 558, 636
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 8 cut(s) 245, 593, 713, 779, 824, 920, 926, 933
HspAI GCGC 1 cut(s) 909
Ksp22I TGATCA 1 cut(s) 661
Kzo9I GATC 4 cut(s) 203, 231, 566, 661
LmnI GCTCC 1 cut(s) 733
LweI GCATC 2 cut(s) 325, 415
MaeI CTAG 1 cut(s) 54
MaeIII GTNAC 2 cut(s) 118, 266
MalI GATC 4 cut(s) 205, 233, 568, 663
MboI GATC 4 cut(s) 203, 231, 566, 661
MboII GAAGA 3 cut(s) 74, 120, 123
MflI RGATCY 2 cut(s) 203, 566
MhlI GDGCHC 1 cut(s) 718
MluCI AATT 8 cut(s) 164, 194, 260, 311, 327, 376, 417, 940
MmeI TCCRAC 3 cut(s) 231, 872, 899
MnlI CCTC 3 cut(s) 532, 853, 855
MseI TTAA 2 cut(s) 432, 746
MslI CAYNNNNRTG 3 cut(s) 669, 797, 921
MspI CCGG 2 cut(s) 113, 570
MwoI GCNNNNNNNGC 3 cut(s) 779, 788, 917
NdeII GATC 4 cut(s) 203, 231, 566, 661
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 8 cut(s) 245, 593, 713, 779, 824, 920, 926, 933
NlaIV GGNNCC 4 cut(s) 205, 568, 574, 717
NmeAIII GCCGAG 1 cut(s) 610
NmuCI GTSAC 1 cut(s) 118
NspI RCATGY 2 cut(s) 593, 933
OliI CACNNNNGTG 1 cut(s) 669
PaqCI CACCTGC 1 cut(s) 704
PciI ACATGT 1 cut(s) 589
PfeI GAWTC 4 cut(s) 79, 125, 189, 296
PflMI CCANNNNNTGG 1 cut(s) 314
PkrI GCNGC 2 cut(s) 790, 885
PscI ACATGT 1 cut(s) 589
PshAI GACNNNNGTC 1 cut(s) 860
PspEI GGTNACC 1 cut(s) 266
PspFI CCCAGC 1 cut(s) 699
PspN4I GGNNCC 4 cut(s) 205, 568, 574, 717
PspPI GGNCC 1 cut(s) 529
PsuI RGATCY 2 cut(s) 203, 566
RseI CAYNNNNRTG 3 cut(s) 669, 797, 921
SaqAI TTAA 2 cut(s) 432, 746
SatI GCNGC 2 cut(s) 789, 884
Sau3AI GATC 4 cut(s) 203, 231, 566, 661
Sau96I GGNCC 1 cut(s) 529
SduI GDGCHC 1 cut(s) 718
SfaNI GCATC 2 cut(s) 325, 415
SfcI CTRYAG 1 cut(s) 479
SinI GGWCC 1 cut(s) 529
SmiMI CAYNNNNRTG 3 cut(s) 669, 797, 921
SmlI CTYRAG 1 cut(s) 865
SmoI CTYRAG 1 cut(s) 865
Sse9I AATT 8 cut(s) 164, 194, 260, 311, 327, 376, 417, 940
SsiI CCGC 4 cut(s) 95, 789, 881, 884
SspMI CTAG 1 cut(s) 54
TaaI ACNGT 4 cut(s) 109, 154, 367, 483
TaqI TCGA 5 cut(s) 234, 353, 510, 535, 690
TaqII GACCGA 1 cut(s) 872
TasI AATT 8 cut(s) 164, 194, 260, 311, 327, 376, 417, 940
TauI GCSGC 2 cut(s) 791, 886
TfiI GAWTC 4 cut(s) 79, 125, 189, 296
Tru1I TTAA 2 cut(s) 432, 746
Tru9I TTAA 2 cut(s) 432, 746
TscAI CASTG 5 cut(s) 127, 289, 488, 622, 820
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 3 cut(s) 146, 383, 489
TspGWI ACGGA 1 cut(s) 521
TspRI CASTG 5 cut(s) 127, 289, 488, 622, 820
Van91I CCANNNNNTGG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 529
XapI RAATTY 1 cut(s) 417
XceI RCATGY 2 cut(s) 593, 933
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.