Rmu_sc0000756.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000756.1
OG0000146
Physical Location & Seq
Reverse (-)
85562 .. 87904
2343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000756.1_g000017.1.cds

Sequence Viewer

Length: 717 bp
atggccgacatcagcgatagacaagcagagagagacgcggaggagaggacgcgtggaggtgacgcacgaatgtggtttagccggaggacgatttgctccgcttggggttggttcgatatcggcctgggggaaggagaggcgacctcgggggagccgggtccgtggacggaggatgccggaggagggagaaaaaggctggtcggaccgccgtctctctcctctcgcccagaacgatcagcttcgacttcagccaaagactgctgtcacttttctctccagatctatttcgtcacttgccttcacctagatccatttcgtcgctcacccacagaccggactgtgttcattatagcttacagaccaattttccaatcaagccaactggattccaatcaagccacagaccagtccaccctcaatccacttcatcagaagaagattatgtctgtttatctccgtgggatacacaagatgaggcatgtgactagaacaattagggctcctagtgaagatgatatggaggcctatgctaagtgggaagatgatgacttgtttgtaatgtcaattctatttagagccatgactgaagatgtgctacaaatggtggaggagtgtgaaaccgctgaggcaatatggaagacattgggagatctcaatacaaatgagtctgattttatacaagttcatgaactaatgtgcaaagctgtaggaatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

27.02

Weight (kDa)

5.21

Isoelectric Point (pI)

57.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 38, 52
AciI CCGC 4 cut(s) 38, 99, 206, 621
AclWI GGATC 1 cut(s) 302
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 231, 606
AfiI CCNNNNNNNGG 2 cut(s) 183, 333
AflIII ACRYGT 1 cut(s) 50
AjnI CCWGG 1 cut(s) 123
AleI CACNNNNGTG 1 cut(s) 70
AluBI AGCT 3 cut(s) 239, 353, 704
AluI AGCT 3 cut(s) 239, 353, 704
Alw26I GTCTC 2 cut(s) 27, 216
AlwI GGATC 1 cut(s) 302
Ama87I CYCGRG 1 cut(s) 145
AoxI GGCC 3 cut(s) 3, 121, 522
AspS9I GGNCC 2 cut(s) 158, 203
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 3 cut(s) 71, 293, 315
AvaI CYCGRG 1 cut(s) 145
AvaII GGWCC 2 cut(s) 158, 203
BanII GRGCYC 1 cut(s) 502
BarI GAAGNNNNNNTAC 2 cut(s) 579, 611
BbsI GAAGAC 1 cut(s) 644
BbvCI CCTCAGC 1 cut(s) 624
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 125
BciVI GTATCC 1 cut(s) 456
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 2 cut(s) 27, 216
BfaI CTAG 3 cut(s) 305, 486, 504
BfmI CTRYAG 1 cut(s) 705
BfuI GTATCC 1 cut(s) 456
BglII AGATCT 2 cut(s) 279, 649
Bme1390I CCNGG 2 cut(s) 125, 156
Bme18I GGWCC 2 cut(s) 158, 203
BmeT110I CYCGRG 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 158, 203
BmiI GGNNCC 3 cut(s) 153, 159, 501
BmrFI CCNGG 2 cut(s) 125, 156
BmsI GCATC 1 cut(s) 163
BoxI GACNNNNGTC 2 cut(s) 208, 261
BpiI GAAGAC 1 cut(s) 644
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpmI CTGGAG 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 624
BpuMI CCSGG 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 390
BsaJI CCNNGG 4 cut(s) 124, 144, 161, 457
BsaWI WCCGGW 1 cut(s) 333
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 333
Bse1I ACTGG 2 cut(s) 387, 406
Bse8I GATNNNNATC 1 cut(s) 390
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 4 cut(s) 124, 144, 161, 457
BseGI GGATG 1 cut(s) 178
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 2 cut(s) 183, 333
BseMII CTCAG 1 cut(s) 615
BseNI ACTGG 2 cut(s) 387, 406
BseRI GAGGAG 4 cut(s) 56, 195, 208, 623
Bsh1236I CGCG 2 cut(s) 38, 52
BshFI GGCC 3 cut(s) 5, 123, 524
BsiHKCI CYCGRG 1 cut(s) 145
BsiSI CCGG 4 cut(s) 82, 155, 177, 334
BslI CCNNNNNNNGG 2 cut(s) 183, 333
BsmAI GTCTC 2 cut(s) 27, 216
BsmBI CGTCTC 2 cut(s) 27, 216
BsnI GGCC 3 cut(s) 5, 123, 524
BsoBI CYCGRG 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 502
Bsp143I GATC 4 cut(s) 233, 279, 307, 649
BspACI CCGC 4 cut(s) 38, 99, 206, 621
BspANI GGCC 3 cut(s) 5, 123, 524
BspCNI CTCAG 1 cut(s) 616
BspFNI CGCG 2 cut(s) 38, 52
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 3 cut(s) 153, 159, 501
BspPI GGATC 1 cut(s) 302
BsrI ACTGG 2 cut(s) 387, 406
BssECI CCNNGG 4 cut(s) 124, 144, 161, 457
BssMI GATC 4 cut(s) 233, 279, 307, 649
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 340
BstDEI CTNAG 2 cut(s) 531, 624
BstDSI CCRYGG 2 cut(s) 161, 457
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 2 cut(s) 38, 52
BstKTI GATC 4 cut(s) 236, 282, 310, 652
BstMAI GTCTC 2 cut(s) 27, 216
BstMBI GATC 4 cut(s) 233, 279, 307, 649
BstNI CCWGG 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 482
BstPAI GACNNNNGTC 2 cut(s) 208, 261
BstSCI CCNGG 2 cut(s) 123, 154
BstSFI CTRYAG 1 cut(s) 705
BstUI CGCG 2 cut(s) 38, 52
BstV2I GAAGAC 1 cut(s) 644
BstX2I RGATCY 3 cut(s) 279, 307, 649
BstYI RGATCY 3 cut(s) 279, 307, 649
BsuI GTATCC 1 cut(s) 456
BsuRI GGCC 3 cut(s) 5, 123, 524
BtgI CCRYGG 2 cut(s) 161, 457
BtsCI GGATG 1 cut(s) 178
CciI TCATGA 1 cut(s) 685
Cfr13I GGNCC 2 cut(s) 158, 203
CpoI CGGWCCG 1 cut(s) 203
CseI GACGC 3 cut(s) 44, 58, 71
CspI CGGWCCG 1 cut(s) 203
CviAII CATG 3 cut(s) 479, 580, 686
DdeI CTNAG 2 cut(s) 531, 624
DpnI GATC 4 cut(s) 235, 281, 309, 651
DpnII GATC 4 cut(s) 233, 279, 307, 649
EaeI YGGCCR 1 cut(s) 3
Eco147I AGGCCT 1 cut(s) 524
Eco24I GRGCYC 1 cut(s) 502
Eco32I GATATC 1 cut(s) 118
Eco47I GGWCC 2 cut(s) 158, 203
Eco57I CTGAAG 2 cut(s) 231, 606
Eco88I CYCGRG 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 123
EcoRV GATATC 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 502
Esp3I CGTCTC 2 cut(s) 27, 216
FaeI CATG 3 cut(s) 482, 583, 689
FaiI YATR 9 cut(s) 350, 443, 480, 518, 528, 581, 634, 677, 687
FatI CATG 3 cut(s) 478, 579, 685
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 1 cut(s) 502
FspBI CTAG 3 cut(s) 305, 486, 504
GsuI CTGGAG 1 cut(s) 260
HaeIII GGCC 3 cut(s) 5, 123, 524
HapII CCGG 4 cut(s) 82, 155, 177, 334
HgaI GACGC 3 cut(s) 44, 58, 71
Hin1II CATG 3 cut(s) 482, 583, 689
HinfI GANTC 2 cut(s) 386, 665
HpaII CCGG 4 cut(s) 82, 155, 177, 334
HphI GGTGA 3 cut(s) 71, 293, 315
Hpy166II GTNNAC 2 cut(s) 165, 411
Hpy188I TCNGA 3 cut(s) 203, 432, 670
Hpy188III TCNNGA 2 cut(s) 277, 686
Hpy8I GTNNAC 2 cut(s) 165, 411
Hpy99I CGWCG 1 cut(s) 321
HpyAV CCTTC 2 cut(s) 125, 308
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4V TGCA 1 cut(s) 699
HpyF3I CTNAG 2 cut(s) 531, 624
Hsp92II CATG 3 cut(s) 482, 583, 689
Kzo9I GATC 4 cut(s) 233, 279, 307, 649
LmnI GCTCC 3 cut(s) 101, 151, 505
LweI GCATC 1 cut(s) 163
MaeI CTAG 3 cut(s) 305, 486, 504
MaeIII GTNAC 4 cut(s) 59, 263, 289, 481
MalI GATC 4 cut(s) 235, 281, 309, 651
MboI GATC 4 cut(s) 233, 279, 307, 649
MboII GAAGA 6 cut(s) 445, 448, 521, 551, 599, 649
MflI RGATCY 3 cut(s) 279, 307, 649
MhlI GDGCHC 1 cut(s) 502
MluCI AATT 3 cut(s) 363, 492, 564
MluI ACGCGT 1 cut(s) 50
MlyI GAGTC 1 cut(s) 674
MmeI TCCRAC 1 cut(s) 181
MslI CAYNNNNRTG 1 cut(s) 70
MspA1I CMGCKG 1 cut(s) 623
MspI CCGG 4 cut(s) 82, 155, 177, 334
MspR9I CCNGG 2 cut(s) 125, 156
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 2 cut(s) 38, 52
NciI CCSGG 1 cut(s) 156
NdeII GATC 4 cut(s) 233, 279, 307, 649
NlaIII CATG 3 cut(s) 482, 583, 689
NlaIV GGNNCC 3 cut(s) 153, 159, 501
NmuCI GTSAC 4 cut(s) 59, 263, 289, 481
NspI RCATGY 1 cut(s) 482
OliI CACNNNNGTG 1 cut(s) 70
PagI TCATGA 1 cut(s) 685
PceI AGGCCT 1 cut(s) 524
PcsI WCGNNNNNNNCGW 1 cut(s) 229
PfeI GAWTC 1 cut(s) 386
PleI GAGTC 1 cut(s) 673
PpsI GAGTC 1 cut(s) 673
PshAI GACNNNNGTC 2 cut(s) 208, 261
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 3 cut(s) 153, 159, 501
PspPI GGNCC 2 cut(s) 158, 203
PsuI RGATCY 3 cut(s) 279, 307, 649
RseI CAYNNNNRTG 1 cut(s) 70
Rsr2I CGGWCCG 1 cut(s) 203
RsrII CGGWCCG 1 cut(s) 203
Sau3AI GATC 4 cut(s) 233, 279, 307, 649
Sau96I GGNCC 2 cut(s) 158, 203
SchI GAGTC 1 cut(s) 674
ScrFI CCNGG 2 cut(s) 125, 156
SduI GDGCHC 1 cut(s) 502
SetI ASST 6 cut(s) 61, 146, 241, 306, 355, 706
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 1 cut(s) 705
SinI GGWCC 2 cut(s) 158, 203
SmiMI CAYNNNNRTG 1 cut(s) 70
Sse9I AATT 3 cut(s) 363, 492, 564
SseBI AGGCCT 1 cut(s) 524
SsiI CCGC 4 cut(s) 38, 99, 206, 621
SspMI CTAG 3 cut(s) 305, 486, 504
StuI AGGCCT 1 cut(s) 524
StyD4I CCNGG 2 cut(s) 123, 154
TaaI ACNGT 1 cut(s) 340
TaqI TCGA 2 cut(s) 114, 242
TasI AATT 3 cut(s) 363, 492, 564
TfiI GAWTC 1 cut(s) 386
TseFI GTSAC 4 cut(s) 59, 263, 289, 481
Tsp45I GTSAC 4 cut(s) 59, 263, 289, 481
TspDTI ATGAA 4 cut(s) 334, 416, 674, 702
TspGWI ACGGA 3 cut(s) 150, 182, 446
VpaK11BI GGWCC 2 cut(s) 158, 203
XceI RCATGY 1 cut(s) 482
XspI CTAG 3 cut(s) 305, 486, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.