Rmu_sc0005781.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005781.1
OG0000146
Physical Location & Seq
Reverse (-)
32156 .. 32809
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005781.1_g000003.1.cds

Sequence Viewer

Length: 654 bp
atgacattaactcattgggtgaagcaggataagataagagttcatatttttcttagaggcctagactcatatttgggtggtgcgaagggtgaacttctctgcatggcacaaccatcaactttggagcaatcatttgcatatattcgaaaacatgagtcaaacaaggctgtaaagaagaatatccacacaaaagtttctagattggtaattcaatccaagcctccacaaccactgcccgctcttatcaccactctactcttcataagctggcaatcttcttcctctccggaatcaaaatcttcatcccctcagttccaacagaggctacaatgttatggaagatctccaaggtactctagtaatcgagtaaggtgccactactggaaagaccttggccatgtcaaggataggtgcccaaagattggaaggattaaccccaactataataactccacgtggaagggtggtaacaaaaacacaaggagcaagacagctgttcaacttatgcaagaacgtgatttctatggtgtggaggggcaagaccgcactaatagtaatgtttctatgaccgaaacacctcgaggtaaaattggtgttcccttatacatttatgacttcactgatagtacacggataattaatgggtgcatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.81

Weight (kDa)

9.96

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 579
AccB1I GGYRCC 2 cut(s) 372, 411
AccB7I CCANNNNNTGG 1 cut(s) 422
AccBSI CCGCTC 1 cut(s) 239
AccIII TCCGGA 1 cut(s) 286
AciI CCGC 2 cut(s) 237, 544
AcoI YGGCCR 1 cut(s) 394
AcvI CACGTG 1 cut(s) 456
AfaI GTAC 2 cut(s) 353, 628
AfiI CCNNNNNNNGG 2 cut(s) 403, 422
AgsI TTSAA 2 cut(s) 212, 500
AluBI AGCT 2 cut(s) 267, 494
AluI AGCT 2 cut(s) 267, 494
Ama87I CYCGRG 1 cut(s) 579
Aor13HI TCCGGA 1 cut(s) 286
AoxI GGCC 2 cut(s) 58, 394
AseI ATTAAT 1 cut(s) 639
AsuHPI GGTGA 3 cut(s) 31, 101, 238
AsuII TTCGAA 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 579
BaeGI GKGCMC 1 cut(s) 416
BaeI ACNNNNGTAYC 2 cut(s) 343, 376
BalI TGGCCA 1 cut(s) 396
BanI GGYRCC 2 cut(s) 372, 411
BbrPI CACGTG 1 cut(s) 456
BccI CCATC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 354, 388
BfaI CTAG 3 cut(s) 62, 198, 357
BglII AGATCT 1 cut(s) 341
BmeT110I CYCGRG 1 cut(s) 579
BmiI GGNNCC 2 cut(s) 374, 413
Bpu14I TTCGAA 1 cut(s) 145
BsaAI YACGTR 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 347, 391
BsaWI WCCGGW 1 cut(s) 286
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 422
Bse1I ACTGG 1 cut(s) 386
BseAI TCCGGA 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 347, 391
BseGI GGATG 1 cut(s) 302
BseLI CCNNNNNNNGG 2 cut(s) 403, 422
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 386
BseSI GKGCMC 1 cut(s) 416
BshFI GGCC 2 cut(s) 60, 396
BshNI GGYRCC 2 cut(s) 372, 411
BsiHKCI CYCGRG 1 cut(s) 579
BsiSI CCGG 1 cut(s) 287
BslI CCNNNNNNNGG 2 cut(s) 403, 422
BsnI GGCC 2 cut(s) 60, 396
BsoBI CYCGRG 1 cut(s) 579
Bsp119I TTCGAA 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 416
Bsp13I TCCGGA 1 cut(s) 286
Bsp143I GATC 1 cut(s) 341
BspACI CCGC 2 cut(s) 237, 544
BspANI GGCC 2 cut(s) 60, 396
BspCNI CTCAG 1 cut(s) 322
BspEI TCCGGA 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 374, 413
BspT104I TTCGAA 1 cut(s) 145
BspT107I GGYRCC 2 cut(s) 372, 411
BsrBI CCGCTC 1 cut(s) 239
BsrI ACTGG 1 cut(s) 386
BssECI CCNNGG 2 cut(s) 347, 391
BssMI GATC 1 cut(s) 341
BssT1I CCWWGG 2 cut(s) 347, 391
Bst6I CTCTTC 1 cut(s) 263
BstBAI YACGTR 1 cut(s) 456
BstBI TTCGAA 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 237, 269
BstDEI CTNAG 2 cut(s) 53, 309
BstF5I GGATG 1 cut(s) 302
BstKTI GATC 1 cut(s) 344
BstMBI GATC 1 cut(s) 341
BstSLI GKGCMC 1 cut(s) 416
BstX2I RGATCY 1 cut(s) 341
BstYI RGATCY 1 cut(s) 341
BsuRI GGCC 2 cut(s) 60, 396
BtsCI GGATG 1 cut(s) 302
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 2 cut(s) 230, 618
Cac8I GCNNGC 2 cut(s) 237, 269
Csp6I GTAC 2 cut(s) 352, 627
CviAII CATG 3 cut(s) 103, 152, 398
CviJI RGCY 7 cut(s) 60, 167, 220, 267, 325, 396, 494
CviKI_1 RGCY 7 cut(s) 60, 167, 220, 267, 325, 396, 494
CviQI GTAC 2 cut(s) 352, 627
DdeI CTNAG 2 cut(s) 53, 309
DpnI GATC 1 cut(s) 343
DpnII GATC 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 394
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Eco130I CCWWGG 2 cut(s) 347, 391
Eco147I AGGCCT 1 cut(s) 60
Eco72I CACGTG 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 579
EcoT14I CCWWGG 2 cut(s) 347, 391
ErhI CCWWGG 2 cut(s) 347, 391
FaeI CATG 3 cut(s) 106, 155, 401
FatI CATG 3 cut(s) 102, 151, 397
FauI CCCGC 1 cut(s) 244
FokI GGATG 1 cut(s) 289
FspBI CTAG 3 cut(s) 62, 198, 357
HaeIII GGCC 2 cut(s) 60, 396
HapII CCGG 1 cut(s) 287
Hin1II CATG 3 cut(s) 106, 155, 401
HinfI GANTC 3 cut(s) 65, 155, 290
HpaII CCGG 1 cut(s) 287
HphI GGTGA 3 cut(s) 31, 101, 238
Hpy166II GTNNAC 2 cut(s) 92, 629
Hpy188III TCNNGA 2 cut(s) 198, 287
Hpy8I GTNNAC 2 cut(s) 92, 629
HpyAV CCTTC 3 cut(s) 79, 420, 454
HpyCH4IV ACGT 2 cut(s) 455, 514
HpyCH4V TGCA 4 cut(s) 102, 137, 508, 648
HpyF3I CTNAG 2 cut(s) 53, 309
HpySE526I ACGT 2 cut(s) 455, 514
Hsp92II CATG 3 cut(s) 106, 155, 401
Kpn2I TCCGGA 1 cut(s) 286
Kzo9I GATC 1 cut(s) 341
LmnI GCTCC 2 cut(s) 124, 483
LpnPI CCDG 4 cut(s) 11, 253, 300, 367
MaeI CTAG 3 cut(s) 62, 198, 357
MaeII ACGT 2 cut(s) 455, 514
MaeIII GTNAC 1 cut(s) 467
MalI GATC 1 cut(s) 343
MbiI CCGCTC 1 cut(s) 239
MboI GATC 1 cut(s) 341
MboII GAAGA 6 cut(s) 187, 250, 267, 270, 291, 351
MflI RGATCY 1 cut(s) 341
MhlI GDGCHC 1 cut(s) 416
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 3 cut(s) 207, 588, 636
MluNI TGGCCA 1 cut(s) 396
MlyI GAGTC 2 cut(s) 59, 164
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 8 cut(s) 50, 231, 292, 315, 318, 526, 575, 588
Mox20I TGGCCA 1 cut(s) 396
MroI TCCGGA 1 cut(s) 286
MscI TGGCCA 1 cut(s) 396
MseI TTAA 3 cut(s) 8, 432, 639
Msp20I TGGCCA 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 1 cut(s) 287
NdeII GATC 1 cut(s) 341
NlaIII CATG 3 cut(s) 106, 155, 401
NlaIV GGNNCC 2 cut(s) 374, 413
NspV TTCGAA 1 cut(s) 145
PaeR7I CTCGAG 1 cut(s) 579
PceI AGGCCT 1 cut(s) 60
PfeI GAWTC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 422
PleI GAGTC 2 cut(s) 59, 163
PmaCI CACGTG 1 cut(s) 456
PmlI CACGTG 1 cut(s) 456
PpsI GAGTC 2 cut(s) 59, 163
Ppu21I YACGTR 1 cut(s) 456
PshBI ATTAAT 1 cut(s) 639
PspCI CACGTG 1 cut(s) 456
PspN4I GGNNCC 2 cut(s) 374, 413
PspXI VCTCGAGB 1 cut(s) 579
PsuI RGATCY 1 cut(s) 341
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 2 cut(s) 353, 628
RsaNI GTAC 2 cut(s) 352, 627
SaqAI TTAA 3 cut(s) 8, 432, 639
Sau3AI GATC 1 cut(s) 341
SchI GAGTC 2 cut(s) 59, 164
SduI GDGCHC 1 cut(s) 416
Sfr274I CTCGAG 1 cut(s) 579
SfuI TTCGAA 1 cut(s) 145
SlaI CTCGAG 1 cut(s) 579
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
Sse9I AATT 3 cut(s) 207, 588, 636
SseBI AGGCCT 1 cut(s) 60
SsiI CCGC 2 cut(s) 237, 544
SspMI CTAG 3 cut(s) 62, 198, 357
StuI AGGCCT 1 cut(s) 60
StyI CCWWGG 2 cut(s) 347, 391
TaiI ACGT 2 cut(s) 458, 517
TaqI TCGA 3 cut(s) 145, 364, 580
TaqII GACCGA 1 cut(s) 584
TasI AATT 3 cut(s) 207, 588, 636
TatI WGTACW 1 cut(s) 626
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 3 cut(s) 8, 432, 639
Tru9I TTAA 3 cut(s) 8, 432, 639
TscAI CASTG 2 cut(s) 237, 625
TspDTI ATGAA 3 cut(s) 32, 250, 291
TspGWI ACGGA 1 cut(s) 646
TspRI CASTG 2 cut(s) 237, 625
Van91I CCANNNNNTGG 1 cut(s) 422
VspI ATTAAT 1 cut(s) 639
XbaI TCTAGA 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 579
XspI CTAG 3 cut(s) 62, 198, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.