RchiOBHm_Chr4g0388741
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000146
Physical Location & Seq
Forward (+)
3959231 .. 3960184
954 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36194

Sequence Viewer

Length: 873 bp
ATGGGTGGTGATGACAGTGAAGGTCAGAGTTCCAAAATCAATGAGGTCCAAAAAGTTGAGGTTTCTGTCCGAAGTTCAGACGGTGTTTCTTTTGGGGGTCCGAAACTCAATGGTACCAACTTTCGAACGTGGAAGAAGATTATGTCTGTCCAGTTTCGTGGCATACACAAGATGGGGCATGTGACTGGAACAACCAAAGCTCCTAGTGAGGAGGATGTGGATGGCTATACTAAGTGGGAGGATGATGATGGATCTGTGATGGCGATCTTATTCAAAGCTATGACTGAAGATGTGCTACAGTTGGTAGAAGGGTGTGAGACTGCGGAAGCAATATGGAAGACATTAGAGGATCTGTATACAAATGAGTCTGATTTTATACATGTTCATGAATTGATGTGCAAAGCTGCTAGTATGCAACAGAATGGGCAACCAGTAGCTGTGTATTTCACCAAGCTAAAGAATGTATGGGCTGAAATTGATCAAAAGCGTCCTTGCAAGATCAAGAATCAGGAAGATCTTGTGTGGTACCAGAAGGAAAAAGAACTTGAAAGAGTTCATGTATTCTTGAGAGGGCTTGATGATAAGCATAGCAATGCCAAAGGAGAATTGCTCAGAATGACAGACCCTCCTAGCCTAAACACAGCTTTTACATACATCCGCAAGGATGAATCTCAACAGGACAGTATCAAACATGCACGGGTTGAAGTGTCTAGCCTAGCCATTCAGCAAAATCACCAGCACCATTTCTCCAACAGCAGCGATCAGTCCCACTTTATCAGCAAGGATCTCCACCAGGCTTTCCTAATCGCCCTCGTCCACAATGCTCTTATTGCAATGATGTTGGGCATGTTCGAGAGACTTGCTGGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

290

Amino Acids

32.84

Weight (kDa)

5.81

Isoelectric Point (pI)

31.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 59 - 159 4.8e-10 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 113, 525
AccB1I GGYRCC 2 cut(s) 113, 525
AccI GTMKAC 1 cut(s) 356
AciI CCGC 2 cut(s) 323, 658
AclWI GGATC 3 cut(s) 259, 357, 792
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 2 cut(s) 115, 527
AflIII ACRYGT 1 cut(s) 379
AgsI TTSAA 3 cut(s) 274, 548, 704
AjnI CCWGG 1 cut(s) 792
AluBI AGCT 6 cut(s) 200, 278, 404, 437, 454, 644
AluI AGCT 6 cut(s) 200, 278, 404, 437, 454, 644
Alw26I GTCTC 2 cut(s) 311, 850
AlwI GGATC 3 cut(s) 259, 357, 792
AlwNI CAGNNNCTG 1 cut(s) 437
ApeKI GCWGC 2 cut(s) 404, 756
Asp700I GAANNNNTTC 1 cut(s) 552
Asp718I GGTACC 2 cut(s) 113, 525
AspS9I GGNCC 2 cut(s) 46, 98
AsuHPI GGTGA 3 cut(s) 20, 439, 725
AsuII TTCGAA 1 cut(s) 124
AvaII GGWCC 2 cut(s) 46, 98
BanI GGYRCC 2 cut(s) 113, 525
BarI GAAGNNNNNNTAC 2 cut(s) 279, 311
BbsI GAAGAC 1 cut(s) 344
BbvI GCAGC 2 cut(s) 391, 768
BccI CCATC 4 cut(s) 166, 215, 242, 253
BcgI CGANNNNNNTGC 1 cut(s) 842
BciT130I CCWGG 1 cut(s) 794
BclI TGATCA 1 cut(s) 478
BcoDI GTCTC 2 cut(s) 311, 850
BfaI CTAG 5 cut(s) 204, 408, 630, 711, 716
BfmI CTRYAG 1 cut(s) 296
BglII AGATCT 1 cut(s) 514
BisI GCNGC 2 cut(s) 405, 757
BlsI GCNGC 2 cut(s) 406, 758
Bme1390I CCNGG 1 cut(s) 794
Bme18I GGWCC 2 cut(s) 46, 98
BmgT120I GGNCC 2 cut(s) 46, 98
BmiI GGNNCC 3 cut(s) 99, 115, 527
BmrFI CCNGG 1 cut(s) 794
BpiI GAAGAC 1 cut(s) 344
BplI GAGNNNNNCTC 2 cut(s) 594, 626
Bpu14I TTCGAA 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 586
BsaBI GATNNNNATC 1 cut(s) 263
BsaXI ACNNNNNCTCC 6 cut(s) 184, 214, 610, 640, 731, 761
Bse1I ACTGG 3 cut(s) 151, 190, 431
Bse3DI GCAATG 2 cut(s) 598, 840
Bse8I GATNNNNATC 1 cut(s) 263
BseBI CCWGG 1 cut(s) 794
BseGI GGATG 5 cut(s) 220, 226, 247, 654, 670
BseJI GATNNNNATC 1 cut(s) 263
BseMI GCAATG 2 cut(s) 598, 840
BseMII CTCAG 1 cut(s) 625
BseNI ACTGG 3 cut(s) 151, 190, 431
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 2 cut(s) 391, 768
BshNI GGYRCC 2 cut(s) 113, 525
BslFI GGGAC 1 cut(s) 751
BsmAI GTCTC 2 cut(s) 311, 850
BsmFI GGGAC 1 cut(s) 751
Bsp119I TTCGAA 1 cut(s) 124
Bsp143I GATC 8 cut(s) 251, 264, 349, 478, 498, 514, 760, 784
BspACI CCGC 2 cut(s) 323, 658
BspCNI CTCAG 1 cut(s) 624
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 3 cut(s) 99, 115, 527
BspPI GGATC 3 cut(s) 259, 357, 792
BspT104I TTCGAA 1 cut(s) 124
BspT107I GGYRCC 2 cut(s) 113, 525
BsrDI GCAATG 2 cut(s) 598, 840
BsrI ACTGG 3 cut(s) 151, 190, 431
BssMI GATC 8 cut(s) 251, 264, 349, 478, 498, 514, 760, 784
BssNAI GTATAC 1 cut(s) 357
Bst1107I GTATAC 1 cut(s) 357
Bst2UI CCWGG 1 cut(s) 794
Bst4CI ACNGT 4 cut(s) 17, 83, 300, 683
BstBI TTCGAA 1 cut(s) 124
BstDEI CTNAG 2 cut(s) 231, 611
BstF5I GGATG 5 cut(s) 220, 226, 247, 654, 670
BstKTI GATC 8 cut(s) 254, 267, 352, 481, 501, 517, 763, 787
BstMAI GTCTC 2 cut(s) 311, 850
BstMBI GATC 8 cut(s) 251, 264, 349, 478, 498, 514, 760, 784
BstMWI GCNNNNNNNGC 1 cut(s) 830
BstNI CCWGG 1 cut(s) 794
BstNSI RCATGY 4 cut(s) 182, 383, 695, 850
BstSCI CCNGG 1 cut(s) 792
BstSFI CTRYAG 1 cut(s) 296
BstV1I GCAGC 2 cut(s) 391, 768
BstV2I GAAGAC 1 cut(s) 344
BstX2I RGATCY 4 cut(s) 251, 349, 514, 784
BstXI CCANNNNNNTGG 1 cut(s) 158
BstYI RGATCY 4 cut(s) 251, 349, 514, 784
BstZ17I GTATAC 1 cut(s) 357
BtsCI GGATG 5 cut(s) 220, 226, 247, 654, 670
BtsIMutI CAGTG 1 cut(s) 22
CaiI CAGNNNCTG 1 cut(s) 437
CciI TCATGA 1 cut(s) 385
Cfr13I GGNCC 2 cut(s) 46, 98
CseI GACGC 1 cut(s) 476
Csp6I GTAC 2 cut(s) 114, 526
CviAII CATG 6 cut(s) 179, 380, 386, 557, 692, 847
CviQI GTAC 2 cut(s) 114, 526
DdeI CTNAG 2 cut(s) 231, 611
DpnI GATC 8 cut(s) 253, 266, 351, 480, 500, 516, 762, 786
DpnII GATC 8 cut(s) 251, 264, 349, 478, 498, 514, 760, 784
Eco47I GGWCC 2 cut(s) 46, 98
Eco57I CTGAAG 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 792
FaeI CATG 6 cut(s) 182, 383, 389, 560, 695, 850
FaqI GGGAC 1 cut(s) 751
FatI CATG 6 cut(s) 178, 379, 385, 556, 691, 846
FbaI TGATCA 1 cut(s) 478
FblI GTMKAC 1 cut(s) 356
Fnu4HI GCNGC 2 cut(s) 405, 757
FokI GGATG 5 cut(s) 227, 233, 254, 641, 677
Fsp4HI GCNGC 2 cut(s) 405, 757
FspBI CTAG 5 cut(s) 204, 408, 630, 711, 716
GluI GCNGC 2 cut(s) 405, 757
HgaI GACGC 1 cut(s) 476
Hin1II CATG 6 cut(s) 182, 383, 389, 560, 695, 850
HinfI GANTC 3 cut(s) 365, 505, 668
HphI GGTGA 3 cut(s) 20, 439, 725
Hpy166II GTNNAC 2 cut(s) 357, 817
Hpy188I TCNGA 6 cut(s) 27, 71, 79, 102, 370, 614
Hpy188III TCNNGA 5 cut(s) 386, 502, 509, 565, 853
Hpy8I GTNNAC 2 cut(s) 357, 817
HpyAV CCTTC 3 cut(s) 14, 302, 526
HpyCH4III ACNGT 4 cut(s) 17, 83, 300, 683
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 5 cut(s) 399, 415, 495, 695, 833
HpyF10VI GCNNNNNNNGC 1 cut(s) 830
HpyF3I CTNAG 2 cut(s) 231, 611
HpySE526I ACGT 1 cut(s) 128
Hsp92II CATG 6 cut(s) 182, 383, 389, 560, 695, 850
KpnI GGTACC 2 cut(s) 117, 529
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 8 cut(s) 251, 264, 349, 478, 498, 514, 760, 784
LmnI GCTCC 1 cut(s) 205
Lsp1109I GCAGC 2 cut(s) 391, 768
MaeI CTAG 5 cut(s) 204, 408, 630, 711, 716
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 181
MalI GATC 8 cut(s) 253, 266, 351, 480, 500, 516, 762, 786
MboI GATC 8 cut(s) 251, 264, 349, 478, 498, 514, 760, 784
MboII GAAGA 5 cut(s) 145, 148, 299, 349, 524
MflI RGATCY 4 cut(s) 251, 349, 514, 784
MluCI AATT 3 cut(s) 389, 474, 605
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 774
MnlI CCTC 9 cut(s) 37, 52, 202, 205, 232, 340, 563, 636, 821
MroXI GAANNNNTTC 1 cut(s) 552
MslI CAYNNNNRTG 2 cut(s) 384, 591
MspR9I CCNGG 1 cut(s) 794
MvaI CCWGG 1 cut(s) 794
MwoI GCNNNNNNNGC 1 cut(s) 830
NdeII GATC 8 cut(s) 251, 264, 349, 478, 498, 514, 760, 784
NlaIII CATG 6 cut(s) 182, 383, 389, 560, 695, 850
NlaIV GGNNCC 3 cut(s) 99, 115, 527
NmuCI GTSAC 1 cut(s) 181
NspI RCATGY 4 cut(s) 182, 383, 695, 850
NspV TTCGAA 1 cut(s) 124
PagI TCATGA 1 cut(s) 385
PciI ACATGT 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 2 cut(s) 505, 668
PkrI GCNGC 2 cut(s) 406, 758
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PscI ACATGT 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 792
PspGI CCWGG 1 cut(s) 792
PspN4I GGNNCC 3 cut(s) 99, 115, 527
PspPI GGNCC 2 cut(s) 46, 98
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 4 cut(s) 251, 349, 514, 784
RsaI GTAC 2 cut(s) 115, 527
RsaNI GTAC 2 cut(s) 114, 526
RseI CAYNNNNRTG 2 cut(s) 384, 591
SatI GCNGC 2 cut(s) 405, 757
Sau3AI GATC 8 cut(s) 251, 264, 349, 478, 498, 514, 760, 784
Sau96I GGNCC 2 cut(s) 46, 98
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 794
SfcI CTRYAG 1 cut(s) 296
SfuI TTCGAA 1 cut(s) 124
SinI GGWCC 2 cut(s) 46, 98
SmiMI CAYNNNNRTG 2 cut(s) 384, 591
SmlI CTYRAG 1 cut(s) 565
SmoI CTYRAG 1 cut(s) 565
Sse9I AATT 3 cut(s) 389, 474, 605
SsiI CCGC 2 cut(s) 323, 658
SspMI CTAG 5 cut(s) 204, 408, 630, 711, 716
StyD4I CCNGG 1 cut(s) 792
TaaI ACNGT 4 cut(s) 17, 83, 300, 683
TaiI ACGT 1 cut(s) 131
TaqI TCGA 2 cut(s) 124, 852
TasI AATT 3 cut(s) 389, 474, 605
TfiI GAWTC 2 cut(s) 505, 668
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 2 cut(s) 404, 756
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 4 cut(s) 374, 402, 545, 681
TspRI CASTG 1 cut(s) 22
VpaK11BI GGWCC 2 cut(s) 46, 98
XceI RCATGY 4 cut(s) 182, 383, 695, 850
XmiI GTMKAC 1 cut(s) 356
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 5 cut(s) 204, 408, 630, 711, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.