Rmu_sc0000920.1_g000021
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000920.1
OG0000146
Physical Location & Seq
Reverse (-)
94472 .. 94951
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000920.1_g000021.1.cds

Sequence Viewer

Length: 480 bp
atgttaccggtagtgcagcaagacttgctgcagaaccaaaagccgatgaatgggatacaacaaatactaattaatgtgatgggaattcttctcaaggctatgactccaaaggtaatgagattatttgctaactatgattctcccaaagcaatttgggattctgttgctgctacatattatgatgggagtgactttgctcgtgttcatgaattgaatgtcaaagctttcaaaataactcagagtggacagcctgttataaccttttatgcgaatttgaagacaatttggcaggagtttgatcggagaaaccctagtcctatgacttgtgaagcagatattaattcctatcggactgagcaggacaagatgcgtgtccatatttttcttgctggcctggaccctcactttgaaggggcaaaaaatgagttattgggtcctgcaactccacctacattggaacaagcttttgcctatatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

159

Amino Acids

18.06

Weight (kDa)

6.28

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AcsI RAATTY 2 cut(s) 84, 271
AfiI CCNNNNNNNGG 1 cut(s) 50
AgeI ACCGGT 1 cut(s) 7
AgsI TTSAA 4 cut(s) 214, 229, 277, 410
AjnI CCWGG 1 cut(s) 393
AluBI AGCT 2 cut(s) 224, 464
AluI AGCT 2 cut(s) 224, 464
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 3 cut(s) 16, 28, 167
ApoI RAATTY 2 cut(s) 84, 271
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AseI ATTAAT 2 cut(s) 72, 339
AsiGI ACCGGT 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 397, 434
AvaII GGWCC 2 cut(s) 397, 434
BauI CACGAG 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 284
BbvI GCAGC 3 cut(s) 15, 28, 154
BccI CCATC 2 cut(s) 73, 176
BciT130I CCWGG 1 cut(s) 395
BciVI GTATCC 1 cut(s) 48
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 29
BfuI GTATCC 1 cut(s) 48
BisI GCNGC 3 cut(s) 17, 29, 168
BlsI GCNGC 3 cut(s) 18, 30, 169
Bme1390I CCNGG 1 cut(s) 395
Bme18I GGWCC 2 cut(s) 397, 434
BmgT120I GGNCC 2 cut(s) 397, 434
BmiI GGNNCC 2 cut(s) 399, 435
BmrFI CCNGG 1 cut(s) 395
BmsI GCATC 1 cut(s) 357
BpiI GAAGAC 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 7
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse118I RCCGGY 1 cut(s) 7
BseBI CCWGG 1 cut(s) 395
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 2 cut(s) 251, 345
BseXI GCAGC 3 cut(s) 15, 28, 154
BsgI GTGCAG 1 cut(s) 35
BshFI GGCC 1 cut(s) 393
BshTI ACCGGT 1 cut(s) 7
BsiSI CCGG 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 50
BsnI GGCC 1 cut(s) 393
Bsp143I GATC 1 cut(s) 298
BspANI GGCC 1 cut(s) 393
BspCNI CTCAG 2 cut(s) 250, 346
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 2 cut(s) 399, 435
BspMAI CTGCAG 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 7
BssAI RCCGGY 1 cut(s) 7
BssMI GATC 1 cut(s) 298
BssSI CACGAG 1 cut(s) 198
Bst2BI CACGAG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 395
BstAPI GCANNNNNTGC 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 2 cut(s) 237, 354
BstKTI GATC 1 cut(s) 301
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 395
BstSCI CCNGG 1 cut(s) 393
BstSFI CTRYAG 1 cut(s) 29
BstV1I GCAGC 3 cut(s) 15, 28, 154
BstV2I GAAGAC 1 cut(s) 284
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 1 cut(s) 393
Cac8I GCNNGC 1 cut(s) 391
CciI TCATGA 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 397, 434
CspAI ACCGGT 1 cut(s) 7
CspCI CAANNNNNGTGG 2 cut(s) 435, 470
CviAII CATG 1 cut(s) 206
CviJI RGCY 6 cut(s) 43, 98, 224, 250, 393, 464
CviKI_1 RGCY 6 cut(s) 43, 98, 224, 250, 393, 464
DdeI CTNAG 2 cut(s) 237, 354
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
Eco47I GGWCC 2 cut(s) 397, 434
EcoO109I RGGNCCY 1 cut(s) 434
EcoRI GAATTC 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 393
FaeI CATG 1 cut(s) 209
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 3 cut(s) 17, 29, 168
Fsp4HI GCNGC 3 cut(s) 17, 29, 168
FspBI CTAG 1 cut(s) 312
GluI GCNGC 3 cut(s) 17, 29, 168
HaeIII GGCC 1 cut(s) 393
HapII CCGG 1 cut(s) 8
Hin1II CATG 1 cut(s) 209
HindIII AAGCTT 2 cut(s) 222, 462
HinfI GANTC 3 cut(s) 103, 137, 158
HpaII CCGG 1 cut(s) 8
Hpy166II GTNNAC 1 cut(s) 245
Hpy188I TCNGA 4 cut(s) 240, 303, 351, 479
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 404
HpyCH4V TGCA 3 cut(s) 16, 31, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 2 cut(s) 237, 354
Hsp92II CATG 1 cut(s) 209
Kzo9I GATC 1 cut(s) 298
LpnPI CCDG 8 cut(s) 21, 264, 275, 344, 375, 380, 407, 450
Lsp1109I GCAGC 3 cut(s) 15, 28, 154
LweI GCATC 1 cut(s) 357
MaeI CTAG 1 cut(s) 312
MaeIII GTNAC 2 cut(s) 3, 188
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 2 cut(s) 80, 289
MluCI AATT 7 cut(s) 69, 84, 150, 209, 271, 282, 340
MlyI GAGTC 1 cut(s) 97
MnlI CCTC 1 cut(s) 411
MseI TTAA 2 cut(s) 72, 339
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 395
MvaI CCWGG 1 cut(s) 395
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 1 cut(s) 298
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 2 cut(s) 399, 435
NmuCI GTSAC 1 cut(s) 188
PagI TCATGA 1 cut(s) 205
PfeI GAWTC 2 cut(s) 137, 158
PinAI ACCGGT 1 cut(s) 7
PkrI GCNGC 3 cut(s) 18, 30, 169
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 434
PshBI ATTAAT 2 cut(s) 72, 339
PsiI TTATAA 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 393
PspGI CCWGG 1 cut(s) 393
PspN4I GGNNCC 2 cut(s) 399, 435
PspPI GGNCC 2 cut(s) 397, 434
PspPPI RGGWCCY 1 cut(s) 434
PstI CTGCAG 1 cut(s) 33
SaqAI TTAA 2 cut(s) 72, 339
SatI GCNGC 3 cut(s) 17, 29, 168
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 2 cut(s) 397, 434
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 395
SetI ASST 5 cut(s) 114, 226, 263, 451, 466
SfaNI GCATC 1 cut(s) 357
SfcI CTRYAG 1 cut(s) 29
SinI GGWCC 2 cut(s) 397, 434
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 7 cut(s) 69, 84, 150, 209, 271, 282, 340
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 393
TasI AATT 7 cut(s) 69, 84, 150, 209, 271, 282, 340
TfiI GAWTC 2 cut(s) 137, 158
Tru1I TTAA 2 cut(s) 72, 339
Tru9I TTAA 2 cut(s) 72, 339
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 3 cut(s) 16, 28, 167
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 3 cut(s) 62, 194, 222
VpaK11BI GGWCC 2 cut(s) 397, 434
VspI ATTAAT 2 cut(s) 72, 339
XapI RAATTY 2 cut(s) 84, 271
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.