Rmu_sc0000795.1_g000017

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000795.1
OG0000146
Physical Location & Seq
Reverse (-)
51568 .. 52395
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000795.1_g000017.1.cds

Sequence Viewer

Length: 747 bp
atgcggatgcgcattggagcacgagggaaggttggttatctgactggagtgaaggctgaacccgccataaattctgcagagtatgaagcttgggccacgaacaatgaaaatgaagctatagagaaaactttttatgatgattctgatgaaacccggatctttgaattgaacaagaagtgttttgaagcaaagcaaaatggacggcctattcctacctactataatgagttagtggcgatgttccaggacattgatcaaagggtggcctctcagaatgataatgttgcagctgtagttcaagagacctcagcgatgtcccagatgcgtgttcacatgtttttgagtggacttgacctagagtatgatcaggtgtgtggagaaatcctgcgcaaggaacctaaattctctttggagcagagctatgcttacattcgcaaggtgcaatcagagaaacaggctatggggcattcgatacctacagaatcctttgttatggctgtccaacgcaaaccaggtcctcctccaggcttctcacatcgtcctctacgtaaaccaaatccatatgcaaatagaaagtgcattgtgtatggggaactaggtcatagcaaagagcggtgctatgaagtgattggttaccatgattggtgggacttcactaagaaaccacgaaagaatctgggcaaggccgccattgctactacagaggaagagtgtctagaaaatgcctccgctaatgtagcgcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

248

Amino Acids

28.27

Weight (kDa)

6.55

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 11, 389
AccBSI CCGCTC 1 cut(s) 613
AciI CCGC 5 cut(s) 4, 63, 613, 687, 729
AclWI GGATC 1 cut(s) 164
AcsI RAATTY 2 cut(s) 70, 401
AfiI CCNNNNNNNGG 2 cut(s) 391, 524
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 4 cut(s) 164, 169, 185, 299
AjnI CCWGG 3 cut(s) 243, 511, 523
AluBI AGCT 4 cut(s) 89, 116, 290, 420
AluI AGCT 4 cut(s) 89, 116, 290, 420
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 1 cut(s) 164
AoxI GGCC 4 cut(s) 93, 203, 264, 684
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 2 cut(s) 70, 401
AspLEI GCGC 3 cut(s) 12, 390, 742
AspS9I GGNCC 2 cut(s) 93, 515
AsuC2I CCSGG 1 cut(s) 154
AvaII GGWCC 1 cut(s) 515
BauI CACGAG 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 22
BbvCI CCTCAGC 1 cut(s) 307
BbvI GCAGC 1 cut(s) 299
BceAI ACGGC 1 cut(s) 218
BciT130I CCWGG 3 cut(s) 245, 513, 525
BclI TGATCA 2 cut(s) 253, 364
BcnI CCSGG 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 3 cut(s) 356, 596, 716
BfmI CTRYAG 5 cut(s) 75, 117, 291, 477, 699
BisI GCNGC 2 cut(s) 288, 687
BlsI GCNGC 2 cut(s) 289, 688
Bme1390I CCNGG 4 cut(s) 154, 245, 513, 525
Bme18I GGWCC 1 cut(s) 515
BmgT120I GGNCC 2 cut(s) 93, 515
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 4 cut(s) 154, 245, 513, 525
BmsI GCATC 1 cut(s) 312
BpmI CTGGAG 2 cut(s) 66, 507
Bpu10I CCTNAGC 1 cut(s) 307
BpuMI CCSGG 1 cut(s) 154
BsaAI YACGTR 1 cut(s) 548
BsaI GGTCTC 1 cut(s) 296
Bsc4I CCNNNNNNNGG 2 cut(s) 391, 524
Bse1I ACTGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 690
BseBI CCWGG 3 cut(s) 245, 513, 525
BseGI GGATG 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 391, 524
BseMI GCAATG 1 cut(s) 690
BseMII CTCAG 2 cut(s) 284, 321
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 510
BseXI GCAGC 1 cut(s) 299
BshFI GGCC 4 cut(s) 95, 205, 266, 686
BsiHKAI GWGCWC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 154
BslFI GGGAC 2 cut(s) 301, 662
BslI CCNNNNNNNGG 2 cut(s) 391, 524
BsmAI GTCTC 1 cut(s) 296
BsmFI GGGAC 2 cut(s) 301, 662
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 4 cut(s) 95, 205, 266, 686
Bso31I GGTCTC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 3 cut(s) 156, 253, 364
BspACI CCGC 5 cut(s) 4, 63, 613, 687, 729
BspANI GGCC 4 cut(s) 95, 205, 266, 686
BspCNI CTCAG 2 cut(s) 283, 320
BspLI GGNNCC 1 cut(s) 396
BspMAI CTGCAG 1 cut(s) 79
BspPI GGATC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 296
BsrBI CCGCTC 1 cut(s) 613
BsrDI GCAATG 1 cut(s) 690
BsrI ACTGG 1 cut(s) 49
BssMI GATC 3 cut(s) 156, 253, 364
BssSI CACGAG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 21
Bst2UI CCWGG 3 cut(s) 245, 513, 525
Bst6I CTCTTC 1 cut(s) 702
BstBAI YACGTR 1 cut(s) 548
BstDEI CTNAG 3 cut(s) 270, 307, 657
BstEII GGTNACC 1 cut(s) 632
BstENI CCTNNNNNAGG 2 cut(s) 389, 522
BstF5I GGATG 1 cut(s) 12
BstHHI GCGC 3 cut(s) 12, 390, 742
BstKTI GATC 3 cut(s) 159, 256, 367
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 3 cut(s) 156, 253, 364
BstMWI GCNNNNNNNGC 3 cut(s) 62, 692, 737
BstNI CCWGG 3 cut(s) 245, 513, 525
BstNSI RCATGY 1 cut(s) 337
BstPI GGTNACC 1 cut(s) 632
BstSCI CCNGG 4 cut(s) 152, 243, 511, 523
BstSFI CTRYAG 5 cut(s) 75, 117, 291, 477, 699
BstSNI TACGTA 1 cut(s) 548
BstV1I GCAGC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BsuRI GGCC 4 cut(s) 95, 205, 266, 686
BtgZI GCGATG 2 cut(s) 251, 326
BtsCI GGATG 1 cut(s) 12
CfoI GCGC 3 cut(s) 12, 390, 742
Cfr13I GGNCC 2 cut(s) 93, 515
CsiI ACCWGGT 1 cut(s) 511
CviAII CATG 2 cut(s) 334, 638
DdeI CTNAG 3 cut(s) 270, 307, 657
DpnI GATC 3 cut(s) 158, 255, 366
DpnII GATC 3 cut(s) 156, 253, 364
Eam1104I CTCTTC 1 cut(s) 702
EarI CTCTTC 1 cut(s) 702
Eco105I TACGTA 1 cut(s) 548
Eco31I GGTCTC 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 515
Eco91I GGTNACC 1 cut(s) 632
EcoNI CCTNNNNNAGG 2 cut(s) 389, 522
EcoO109I RGGNCCY 1 cut(s) 515
EcoO65I GGTNACC 1 cut(s) 632
EcoRII CCWGG 3 cut(s) 243, 511, 523
FaeI CATG 2 cut(s) 337, 641
FaqI GGGAC 2 cut(s) 301, 662
FatI CATG 2 cut(s) 333, 637
FauI CCCGC 1 cut(s) 70
FauNDI CATATG 1 cut(s) 562
FbaI TGATCA 2 cut(s) 253, 364
Fnu4HI GCNGC 2 cut(s) 288, 687
FokI GGATG 1 cut(s) 19
Fsp4HI GCNGC 2 cut(s) 288, 687
FspAI RTGCGCAY 1 cut(s) 11
FspBI CTAG 3 cut(s) 356, 596, 716
FspI TGCGCA 2 cut(s) 11, 389
GlaI GCGC 3 cut(s) 11, 389, 741
GluI GCNGC 2 cut(s) 288, 687
GsuI CTGGAG 2 cut(s) 66, 507
HaeIII GGCC 4 cut(s) 95, 205, 266, 686
HapII CCGG 1 cut(s) 154
HhaI GCGC 3 cut(s) 12, 390, 742
Hin1II CATG 2 cut(s) 337, 641
Hin6I GCGC 3 cut(s) 10, 388, 740
HinP1I GCGC 3 cut(s) 10, 388, 740
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 3 cut(s) 140, 482, 673
HpaII CCGG 1 cut(s) 154
Hpy166II GTNNAC 3 cut(s) 331, 347, 551
Hpy188I TCNGA 4 cut(s) 42, 145, 273, 448
Hpy188III TCNNGA 2 cut(s) 299, 716
Hpy8I GTNNAC 3 cut(s) 331, 347, 551
HpyAV CCTTC 2 cut(s) 22, 46
HpyCH4IV ACGT 1 cut(s) 547
HpyCH4V TGCA 5 cut(s) 77, 287, 442, 566, 579
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 692, 737
HpyF3I CTNAG 3 cut(s) 270, 307, 657
HpySE526I ACGT 1 cut(s) 547
Hsp92II CATG 2 cut(s) 337, 641
HspAI GCGC 3 cut(s) 10, 388, 740
Ksp22I TGATCA 2 cut(s) 253, 364
Kzo9I GATC 3 cut(s) 156, 253, 364
LmnI GCTCC 2 cut(s) 17, 412
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 1 cut(s) 312
MabI ACCWGGT 1 cut(s) 511
MaeI CTAG 3 cut(s) 356, 596, 716
MaeII ACGT 1 cut(s) 547
MaeIII GTNAC 1 cut(s) 632
MalI GATC 3 cut(s) 158, 255, 366
MbiI CCGCTC 1 cut(s) 613
MboI GATC 3 cut(s) 156, 253, 364
MboII GAAGA 1 cut(s) 719
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 3 cut(s) 70, 164, 401
MmeI TCCRAC 1 cut(s) 526
MnlI CCTC 8 cut(s) 17, 277, 316, 528, 531, 552, 697, 736
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 4 cut(s) 154, 245, 513, 525
Mva1269I GAATGC 1 cut(s) 466
MvaI CCWGG 3 cut(s) 245, 513, 525
MwoI GCNNNNNNNGC 3 cut(s) 62, 692, 737
NciI CCSGG 1 cut(s) 154
NdeI CATATG 1 cut(s) 562
NdeII GATC 3 cut(s) 156, 253, 364
NlaIII CATG 2 cut(s) 337, 641
NlaIV GGNNCC 1 cut(s) 396
NsbI TGCGCA 2 cut(s) 11, 389
NspI RCATGY 1 cut(s) 337
PciI ACATGT 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 544
PctI GAATGC 1 cut(s) 466
PfeI GAWTC 3 cut(s) 140, 482, 673
PfoI TCCNGGA 1 cut(s) 243
PkrI GCNGC 2 cut(s) 289, 688
Ppu21I YACGTR 1 cut(s) 548
PpuMI RGGWCCY 1 cut(s) 515
PscI ACATGT 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 515
Psp6I CCWGG 3 cut(s) 243, 511, 523
PspEI GGTNACC 1 cut(s) 632
PspGI CCWGG 3 cut(s) 243, 511, 523
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 2 cut(s) 93, 515
PspPPI RGGWCCY 1 cut(s) 515
PstI CTGCAG 1 cut(s) 79
PsuI RGATCY 1 cut(s) 156
PvuII CAGCTG 1 cut(s) 290
SatI GCNGC 2 cut(s) 288, 687
Sau3AI GATC 3 cut(s) 156, 253, 364
Sau96I GGNCC 2 cut(s) 93, 515
ScrFI CCNGG 4 cut(s) 154, 245, 513, 525
SduI GDGCHC 1 cut(s) 22
SexAI ACCWGGT 1 cut(s) 511
SfaNI GCATC 1 cut(s) 312
SfcI CTRYAG 5 cut(s) 75, 117, 291, 477, 699
SinI GGWCC 1 cut(s) 515
SnaBI TACGTA 1 cut(s) 548
Sse9I AATT 3 cut(s) 70, 164, 401
SsiI CCGC 5 cut(s) 4, 63, 613, 687, 729
SspMI CTAG 3 cut(s) 356, 596, 716
StyD4I CCNGG 4 cut(s) 152, 243, 511, 523
TaiI ACGT 1 cut(s) 550
TaqI TCGA 1 cut(s) 470
TasI AATT 3 cut(s) 70, 164, 401
TauI GCSGC 1 cut(s) 689
TfiI GAWTC 3 cut(s) 140, 482, 673
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 5 cut(s) 99, 120, 126, 162, 636
VpaK11BI GGWCC 1 cut(s) 515
XagI CCTNNNNNAGG 2 cut(s) 389, 522
XapI RAATTY 2 cut(s) 70, 401
XbaI TCTAGA 1 cut(s) 715
XceI RCATGY 1 cut(s) 337
XspI CTAG 3 cut(s) 356, 596, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.