RchiOBHm_Chr7g0238461
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000146
Physical Location & Seq
Reverse (-)
63866844 .. 63867830
987 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21369

Sequence Viewer

Length: 609 bp
ATGATGACTGCTCATCTTTGCGGTCTGGACAAGATGGGATATGTGAATGGATTGATTCAGACACCAGATGAAAAAGATGTGGGTTATGCAAAGTGGGAAATTCATAATGGTGCCGTGATGTCTGTGCTCTACAAAGCCATGACGGATGAGGTAGTACAATTAATTATTGGGTGTGAAACTGCAGCAGAAATTTGGAGTACTTTGAAGCAATTGTATCTGAATGACTCGGATTTTGCTCAAATACATGAGCTTCATACCAAGGCGTTCATGATGAGGCAGGATGGGAGGCCTGTGGCAGTATACTATGCTGCCCTTAAAGGTCTATGGTTGGAAATTAATCAAAGGCGTCCCAACAAGATGAAGAATGCTGATGACATCAAGCTACATAATGAAGAGAAGGATCTAATGAGGCTGCATATCTTCCTTCATGGTCTCGACGACAAGCATGCTAGTGCAAAGGGTGAGTTGCTGAGACGTGGAACTCCACCTACCCTTGAGGATGCCTTTGCATATATACGCAAAGATAAGACTCAACTTGATAGCACCAAAGCAATCCATTTGGAGTTATCAAGTCTCACTGTCCAAACCAAGCCTTCACCATCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

202

Amino Acids

22.95

Weight (kDa)

6.75

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 2 - 106 1.6e-08 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AccI GTMKAC 1 cut(s) 300
AciI CCGC 1 cut(s) 21
AclWI GGATC 1 cut(s) 408
AcsI RAATTY 2 cut(s) 99, 189
AcyI GRCGYC 1 cut(s) 346
AfaI GTAC 2 cut(s) 156, 199
AgsI TTSAA 1 cut(s) 205
AjiI CACGTC 1 cut(s) 476
AluBI AGCT 2 cut(s) 250, 382
AluI AGCT 2 cut(s) 250, 382
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 3 cut(s) 437, 466, 578
AlwI GGATC 1 cut(s) 408
AoxI GGCC 1 cut(s) 287
ApeKI GCWGC 3 cut(s) 182, 308, 412
ApoI RAATTY 2 cut(s) 99, 189
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AseI ATTAAT 2 cut(s) 161, 336
AsuHPI GGTGA 2 cut(s) 473, 588
BanI GGYRCC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 3 cut(s) 194, 295, 399
BccI CCATC 3 cut(s) 28, 275, 607
BceAI ACGGC 1 cut(s) 98
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BcoDI GTCTC 3 cut(s) 437, 466, 578
BfaI CTAG 1 cut(s) 450
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 3 cut(s) 183, 309, 413
BlsI GCNGC 3 cut(s) 184, 310, 414
BmcAI AGTACT 1 cut(s) 199
BmgBI CACGTC 1 cut(s) 476
BmiI GGNNCC 1 cut(s) 112
BmsI GCATC 1 cut(s) 490
BpuEI CTTGAG 1 cut(s) 515
BsaHI GRCGYC 1 cut(s) 346
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 3 cut(s) 151, 286, 505
BseMII CTCAG 1 cut(s) 461
BseXI GCAGC 3 cut(s) 194, 295, 399
BshFI GGCC 1 cut(s) 289
BshNI GGYRCC 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 129
BslFI GGGAC 1 cut(s) 333
BsmAI GTCTC 3 cut(s) 437, 466, 578
BsmBI CGTCTC 1 cut(s) 466
BsmFI GGGAC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 1 cut(s) 289
Bso31I GGTCTC 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 1 cut(s) 400
BspACI CCGC 1 cut(s) 21
BspANI GGCC 1 cut(s) 289
BspCNI CTCAG 1 cut(s) 462
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 112
BspMAI CTGCAG 1 cut(s) 184
BspPI GGATC 1 cut(s) 408
BspT107I GGYRCC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 1 cut(s) 400
BssNAI GTATAC 1 cut(s) 301
BssNI GRCGYC 1 cut(s) 346
BssT1I CCWWGG 1 cut(s) 258
Bst1107I GTATAC 1 cut(s) 301
Bst4CI ACNGT 1 cut(s) 580
Bst6I CTCTTC 1 cut(s) 387
BstACI GRCGYC 1 cut(s) 346
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 1 cut(s) 470
BstF5I GGATG 3 cut(s) 151, 286, 505
BstKTI GATC 1 cut(s) 403
BstMAI GTCTC 3 cut(s) 437, 466, 578
BstMBI GATC 1 cut(s) 400
BstNSI RCATGY 1 cut(s) 449
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 3 cut(s) 194, 295, 399
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
BstZ17I GTATAC 1 cut(s) 301
BsuRI GGCC 1 cut(s) 289
BtrI CACGTC 1 cut(s) 476
BtsCI GGATG 3 cut(s) 151, 286, 505
BtsIMutI CAGTG 1 cut(s) 576
Cac8I GCNNGC 1 cut(s) 447
CciI TCATGA 1 cut(s) 267
CseI GACGC 1 cut(s) 335
Csp6I GTAC 2 cut(s) 155, 198
CviAII CATG 5 cut(s) 139, 245, 268, 428, 446
CviJI RGCY 6 cut(s) 137, 250, 289, 382, 412, 592
CviKI_1 RGCY 6 cut(s) 137, 250, 289, 382, 412, 592
CviQI GTAC 2 cut(s) 155, 198
DdeI CTNAG 1 cut(s) 470
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 258
Eco147I AGGCCT 1 cut(s) 289
Eco31I GGTCTC 1 cut(s) 437
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 466
FaeI CATG 5 cut(s) 142, 248, 271, 431, 449
FaqI GGGAC 1 cut(s) 333
FatI CATG 5 cut(s) 138, 244, 267, 427, 445
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 3 cut(s) 183, 309, 413
FokI GGATG 3 cut(s) 158, 293, 512
Fsp4HI GCNGC 3 cut(s) 183, 309, 413
FspBI CTAG 1 cut(s) 450
GluI GCNGC 3 cut(s) 183, 309, 413
HaeIII GGCC 1 cut(s) 289
HgaI GACGC 1 cut(s) 335
Hin1I GRCGYC 1 cut(s) 346
Hin1II CATG 5 cut(s) 142, 248, 271, 431, 449
HinfI GANTC 3 cut(s) 55, 224, 529
HphI GGTGA 2 cut(s) 473, 588
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 3 cut(s) 60, 219, 229
Hpy188III TCNNGA 3 cut(s) 26, 268, 434
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 1 cut(s) 440
HpyAV CCTTC 3 cut(s) 391, 434, 603
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4IV ACGT 1 cut(s) 475
HpyCH4V TGCA 5 cut(s) 89, 182, 415, 455, 509
HpyF3I CTNAG 1 cut(s) 470
HpySE526I ACGT 1 cut(s) 475
Hsp92I GRCGYC 1 cut(s) 346
Hsp92II CATG 5 cut(s) 142, 248, 271, 431, 449
Kzo9I GATC 1 cut(s) 400
LpnPI CCDG 4 cut(s) 11, 78, 263, 303
Lsp1109I GCAGC 3 cut(s) 194, 295, 399
LweI GCATC 1 cut(s) 490
MaeI CTAG 1 cut(s) 450
MaeII ACGT 1 cut(s) 475
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 3 cut(s) 373, 404, 412
MfeI CAATTG 1 cut(s) 209
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 6 cut(s) 99, 158, 162, 189, 209, 333
MlyI GAGTC 2 cut(s) 218, 523
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 5 cut(s) 142, 267, 279, 402, 490
MseI TTAA 3 cut(s) 161, 315, 336
MslI CAYNNNNRTG 2 cut(s) 108, 450
MunI CAATTG 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 370
NdeII GATC 1 cut(s) 400
NlaIII CATG 5 cut(s) 142, 248, 271, 431, 449
NlaIV GGNNCC 1 cut(s) 112
NspI RCATGY 1 cut(s) 449
PaeI GCATGC 1 cut(s) 449
PagI TCATGA 1 cut(s) 267
PceI AGGCCT 1 cut(s) 289
PctI GAATGC 1 cut(s) 370
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 3 cut(s) 184, 310, 414
PleI GAGTC 2 cut(s) 218, 523
PpsI GAGTC 2 cut(s) 218, 523
PshBI ATTAAT 2 cut(s) 161, 336
PspN4I GGNNCC 1 cut(s) 112
PsrI GAACNNNNNNTAC 2 cut(s) 472, 504
PstI CTGCAG 1 cut(s) 184
PsuI RGATCY 1 cut(s) 400
RsaI GTAC 2 cut(s) 156, 199
RsaNI GTAC 2 cut(s) 155, 198
RseI CAYNNNNRTG 2 cut(s) 108, 450
SaqAI TTAA 3 cut(s) 161, 315, 336
SatI GCNGC 3 cut(s) 183, 309, 413
Sau3AI GATC 1 cut(s) 400
ScaI AGTACT 1 cut(s) 199
SchI GAGTC 2 cut(s) 218, 523
SduI GDGCHC 1 cut(s) 129
SetI ASST 6 cut(s) 153, 252, 322, 384, 478, 490
SfaNI GCATC 1 cut(s) 490
SfcI CTRYAG 1 cut(s) 180
SmiMI CAYNNNNRTG 2 cut(s) 108, 450
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
SphI GCATGC 1 cut(s) 449
Sse9I AATT 6 cut(s) 99, 158, 162, 189, 209, 333
SseBI AGGCCT 1 cut(s) 289
SsiI CCGC 1 cut(s) 21
SspMI CTAG 1 cut(s) 450
StuI AGGCCT 1 cut(s) 289
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 580
TaiI ACGT 1 cut(s) 478
TaqI TCGA 1 cut(s) 435
TasI AATT 6 cut(s) 99, 158, 162, 189, 209, 333
TatI WGTACW 2 cut(s) 154, 197
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 3 cut(s) 161, 315, 336
Tru9I TTAA 3 cut(s) 161, 315, 336
TscAI CASTG 1 cut(s) 583
TseI GCWGC 3 cut(s) 182, 308, 412
TspDTI ATGAA 7 cut(s) 84, 92, 242, 256, 374, 405, 416
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 1 cut(s) 583
VspI ATTAAT 2 cut(s) 161, 336
XapI RAATTY 2 cut(s) 99, 189
XceI RCATGY 1 cut(s) 449
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 1 cut(s) 450
ZrmI AGTACT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.