RchiOBHm_Chr1g0359621
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000146
Physical Location & Seq
Reverse (-)
51530140 .. 51537346
7207 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58466

Sequence Viewer

Length: 351 bp
ATGGTGGATTTGAAGATCACCGACGAGAATAGTGGAGAATCTCTAGAGTTTGGAGAGACGAGTTCTGTGGCCCGTGAGGTCGTAATTGTTCAGAATGTCACAGATAACTCGAGTTTTGGTGTCAAGCTCAATAGTACCAATTATCAGTTATGGCAGAGACTCATGAAGATCCATATTCATGGGATTGGAAAGTGGAATTATGTTATCGGTAGCGCAGCAAGACCTACTGCAGGACCAAAAGTCGATGAATGGGATACAACAATTACTATTGTGATGAGAATTATTCTCAAGGCTATGACTCCGGAGGTAATGAGATCATTTGCTAACTATGATTCTCCCAAAGCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 rve

Protein Analysis

116

Amino Acids

12.97

Weight (kDa)

6.08

Isoelectric Point (pI)

21.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 301
AclWI GGATC 1 cut(s) 163
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 1 cut(s) 13
AhdI GACNNNNNGTC 1 cut(s) 239
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw26I GTCTC 2 cut(s) 50, 151
AlwI GGATC 1 cut(s) 163
Ama87I CYCGRG 1 cut(s) 109
Aor13HI TCCGGA 1 cut(s) 301
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 215
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 2 cut(s) 70, 233
AsuHPI GGTGA 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 109
AvaII GGWCC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 227
BciVI GTATCC 1 cut(s) 247
BcoDI GTCTC 2 cut(s) 50, 151
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 228
BfuI GTATCC 1 cut(s) 247
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme18I GGWCC 1 cut(s) 233
BmeRI GACNNNNNGTC 1 cut(s) 239
BmeT110I CYCGRG 1 cut(s) 109
BmgT120I GGNCC 2 cut(s) 70, 233
BpuEI CTTGAG 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 230
BseAI TCCGGA 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 227
BshFI GGCC 1 cut(s) 71
BsiHKCI CYCGRG 1 cut(s) 109
BsiSI CCGG 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 2 cut(s) 50, 151
BsmBI CGTCTC 1 cut(s) 50
BsnI GGCC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 109
Bsp13I TCCGGA 1 cut(s) 301
Bsp143I GATC 3 cut(s) 15, 168, 314
BspANI GGCC 1 cut(s) 71
BspEI TCCGGA 1 cut(s) 301
BspHI TCATGA 1 cut(s) 162
BspMAI CTGCAG 1 cut(s) 232
BspPI GGATC 1 cut(s) 163
BssMI GATC 3 cut(s) 15, 168, 314
BstENI CCTNNNNNAGG 1 cut(s) 228
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 3 cut(s) 18, 171, 317
BstMAI GTCTC 2 cut(s) 50, 151
BstMBI GATC 3 cut(s) 15, 168, 314
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 168
BstXI CCANNNNNNTGG 1 cut(s) 179
BstYI RGATCY 1 cut(s) 168
BsuI GTATCC 1 cut(s) 247
BsuRI GGCC 1 cut(s) 71
CciI TCATGA 1 cut(s) 162
CfoI GCGC 1 cut(s) 215
Cfr13I GGNCC 2 cut(s) 70, 233
Csp6I GTAC 1 cut(s) 135
CviAII CATG 2 cut(s) 163, 179
CviJI RGCY 3 cut(s) 71, 127, 293
CviKI_1 RGCY 3 cut(s) 71, 127, 293
CviQI GTAC 1 cut(s) 135
DpnI GATC 3 cut(s) 17, 170, 316
DpnII GATC 3 cut(s) 15, 168, 314
DriI GACNNNNNGTC 1 cut(s) 239
Eam1105I GACNNNNNGTC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 233
Eco88I CYCGRG 1 cut(s) 109
EcoNI CCTNNNNNAGG 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 50
FaeI CATG 2 cut(s) 166, 182
FaiI YATR 7 cut(s) 151, 164, 174, 180, 201, 296, 330
FatI CATG 2 cut(s) 162, 178
Fnu4HI GCNGC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 214
GluI GCNGC 1 cut(s) 216
HaeIII GGCC 1 cut(s) 71
HapII CCGG 1 cut(s) 302
HhaI GCGC 1 cut(s) 215
Hin1II CATG 2 cut(s) 166, 182
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 4 cut(s) 38, 159, 298, 332
HpaII CCGG 1 cut(s) 302
HphI GGTGA 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 3 cut(s) 44, 163, 302
Hpy99I CGWCG 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 230
Hsp92II CATG 2 cut(s) 166, 182
HspAI GCGC 1 cut(s) 213
Kpn2I TCCGGA 1 cut(s) 301
Kzo9I GATC 3 cut(s) 15, 168, 314
LpnPI CCDG 2 cut(s) 216, 315
Lsp1109I GCAGC 1 cut(s) 227
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 97
MalI GATC 3 cut(s) 17, 170, 316
MboI GATC 3 cut(s) 15, 168, 314
MboII GAAGA 2 cut(s) 25, 178
MflI RGATCY 1 cut(s) 168
MluCI AATT 6 cut(s) 84, 139, 196, 261, 279, 345
MlyI GAGTC 2 cut(s) 153, 292
MnlI CCTC 2 cut(s) 70, 298
MroI TCCGGA 1 cut(s) 301
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 1 cut(s) 302
NdeII GATC 3 cut(s) 15, 168, 314
NlaIII CATG 2 cut(s) 166, 182
NmuCI GTSAC 1 cut(s) 97
PaeR7I CTCGAG 1 cut(s) 109
PagI TCATGA 1 cut(s) 162
PfeI GAWTC 2 cut(s) 38, 332
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 2 cut(s) 153, 292
PpsI GAGTC 2 cut(s) 153, 292
PspPI GGNCC 2 cut(s) 70, 233
PspXI VCTCGAGB 1 cut(s) 109
PstI CTGCAG 1 cut(s) 232
PsuI RGATCY 1 cut(s) 168
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 177
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 3 cut(s) 15, 168, 314
Sau96I GGNCC 2 cut(s) 70, 233
SchI GAGTC 2 cut(s) 153, 292
SetI ASST 4 cut(s) 81, 129, 226, 309
SfcI CTRYAG 1 cut(s) 228
Sfr274I CTCGAG 1 cut(s) 109
SinI GGWCC 1 cut(s) 233
SlaI CTCGAG 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 2 cut(s) 109, 287
SmoI CTYRAG 2 cut(s) 109, 287
Sse9I AATT 6 cut(s) 84, 139, 196, 261, 279, 345
SspMI CTAG 1 cut(s) 44
TaqI TCGA 2 cut(s) 110, 243
TasI AATT 6 cut(s) 84, 139, 196, 261, 279, 345
TfiI GAWTC 2 cut(s) 38, 332
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 3 cut(s) 167, 179, 261
VpaK11BI GGWCC 1 cut(s) 233
XagI CCTNNNNNAGG 1 cut(s) 228
XbaI TCTAGA 1 cut(s) 43
XhoI CTCGAG 1 cut(s) 109
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.