RchiOBHm_Chr2g0113741
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000146
Physical Location & Seq
Forward (+)
25878047 .. 25879404
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48706

Sequence Viewer

Length: 624 bp
ATGCAACAGAACAGGCAATCAATAGCTGTGTATTTCACCAAGCTGAAGAATGTGTGGGCTGAAATTGATCAGAAGCGTCCTTGCAAGATCAAGAATCAGGAAGATCTTGTGTGGTACCAGAAGGAGAAGGAACTTGAAAGAGTTCATGTATTCTTAAGAGGGCTTGATGATAAGCATAGCAATGCTAAAGGAGAATTGCTCAGAATGACAGACCCTCCTAGTCTAAACAAAGCTTTTACATACATCCGCAAGGATGAGTCTCAGCAGGACAGTATCAAACATGCACAGGTTGAAGTGTCTAGCCTAGCCATTCAAGTAAAATCACCAGCACCATTTCTCCAACAGCAGAGATCAGTCCCACTTTATCACCAAGGACCTCCACCCGGCTTTCCCAATCGCCCTCGTCCACAATGCTCTTATTGCAATGATGTTGGGCATGTTCGAGCGACTTGTTGGAAATTGAACCCGCACCTTAAGACTACAAGACAAGGTTATCAGCGTAAGGCGAAAGCAGCTGCTGTTCAATTGGTCCAAGAACCCGATTTCTATGGGGTGGCTGGACAGGATCATCATATAGCAGGTGGGGCTACTCCTACAGCATCTATAGCTGGTCGTGGGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.45

Weight (kDa)

9.59

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_10 PF16588 137 - 152 7.3e-07 C2H2 zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 569
Acc36I ACCTGC 1 cut(s) 569
Acc65I GGTACC 1 cut(s) 114
AccB1I GGYRCC 1 cut(s) 114
AciI CCGC 2 cut(s) 247, 467
AclWI GGATC 1 cut(s) 573
AcuI CTGAAG 1 cut(s) 65
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 383
AflII CTTAAG 2 cut(s) 154, 473
AgsI TTSAA 5 cut(s) 137, 293, 314, 463, 524
AluBI AGCT 5 cut(s) 26, 43, 233, 515, 608
AluI AGCT 5 cut(s) 26, 43, 233, 515, 608
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 1 cut(s) 573
AlwNI CAGNNNCTG 1 cut(s) 518
ApeKI GCWGC 2 cut(s) 512, 515
Asp700I GAANNNNTTC 1 cut(s) 141
Asp718I GGTACC 1 cut(s) 114
AspS9I GGNCC 2 cut(s) 374, 529
AsuC2I CCSGG 1 cut(s) 384
AsuHPI GGTGA 3 cut(s) 28, 315, 359
AvaII GGWCC 2 cut(s) 374, 529
BanI GGYRCC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 502, 524
BclI TGATCA 1 cut(s) 67
BcnI CCSGG 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 3 cut(s) 219, 300, 305
BfmI CTRYAG 2 cut(s) 594, 603
BfrI CTTAAG 2 cut(s) 154, 473
BfuAI ACCTGC 1 cut(s) 569
BglII AGATCT 1 cut(s) 103
BisI GCNGC 2 cut(s) 513, 516
BlsI GCNGC 2 cut(s) 514, 517
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 2 cut(s) 374, 529
BmgT120I GGNCC 2 cut(s) 374, 529
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 384
BmsI GCATC 1 cut(s) 608
BplI GAGNNNNNCTC 2 cut(s) 183, 215
BpuMI CCSGG 1 cut(s) 384
BsaJI CCNNGG 1 cut(s) 370
BsaXI ACNNNNNCTCC 4 cut(s) 199, 229, 321, 351
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse3DI GCAATG 2 cut(s) 187, 430
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 2 cut(s) 243, 259
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMI GCAATG 2 cut(s) 187, 430
BseMII CTCAG 2 cut(s) 214, 275
BseXI GCAGC 2 cut(s) 502, 524
BshNI GGYRCC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 384
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 341
Bsp143I GATC 5 cut(s) 67, 87, 103, 350, 565
BspACI CCGC 2 cut(s) 247, 467
BspCNI CTCAG 2 cut(s) 213, 274
BspLI GGNNCC 1 cut(s) 116
BspMI ACCTGC 1 cut(s) 569
BspPI GGATC 1 cut(s) 573
BspT107I GGYRCC 1 cut(s) 114
BspTI CTTAAG 2 cut(s) 154, 473
BsrDI GCAATG 2 cut(s) 187, 430
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 5 cut(s) 67, 87, 103, 350, 565
BssT1I CCWWGG 1 cut(s) 370
Bst4CI ACNGT 1 cut(s) 272
BstAFI CTTAAG 2 cut(s) 154, 473
BstDEI CTNAG 2 cut(s) 200, 261
BstF5I GGATG 2 cut(s) 243, 259
BstKTI GATC 5 cut(s) 70, 90, 106, 353, 568
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 5 cut(s) 67, 87, 103, 350, 565
BstMWI GCNNNNNNNGC 4 cut(s) 420, 512, 584, 605
BstNSI RCATGY 2 cut(s) 284, 440
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 2 cut(s) 594, 603
BstV1I GCAGC 2 cut(s) 502, 524
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BtsCI GGATG 2 cut(s) 243, 259
BveI ACCTGC 1 cut(s) 569
CaiI CAGNNNCTG 1 cut(s) 518
Cfr13I GGNCC 2 cut(s) 374, 529
CseI GACGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 115
CviAII CATG 3 cut(s) 146, 281, 437
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 2 cut(s) 200, 261
DpnI GATC 5 cut(s) 69, 89, 105, 352, 567
DpnII GATC 5 cut(s) 67, 87, 103, 350, 565
Eco130I CCWWGG 1 cut(s) 370
Eco47I GGWCC 2 cut(s) 374, 529
Eco57I CTGAAG 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 3 cut(s) 149, 284, 440
FaiI YATR 9 cut(s) 147, 177, 241, 282, 438, 549, 573, 575, 605
FaqI GGGAC 1 cut(s) 341
FatI CATG 3 cut(s) 145, 280, 436
FauI CCCGC 1 cut(s) 474
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 513, 516
FokI GGATG 2 cut(s) 230, 266
Fsp4HI GCNGC 2 cut(s) 513, 516
FspBI CTAG 3 cut(s) 219, 300, 305
GluI GCNGC 2 cut(s) 513, 516
HapII CCGG 1 cut(s) 384
HgaI GACGC 1 cut(s) 65
Hin1II CATG 3 cut(s) 149, 284, 440
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 2 cut(s) 94, 257
HpaII CCGG 1 cut(s) 384
HphI GGTGA 3 cut(s) 28, 315, 359
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 2 cut(s) 72, 203
Hpy188III TCNNGA 2 cut(s) 91, 98
Hpy8I GTNNAC 1 cut(s) 407
HpyAV CCTTC 2 cut(s) 115, 121
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 4 cut(s) 4, 84, 284, 423
HpyF10VI GCNNNNNNNGC 4 cut(s) 420, 512, 584, 605
HpyF3I CTNAG 2 cut(s) 200, 261
Hsp92II CATG 3 cut(s) 149, 284, 440
KpnI GGTACC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 5 cut(s) 67, 87, 103, 350, 565
Lsp1109I GCAGC 2 cut(s) 502, 524
LweI GCATC 1 cut(s) 608
MaeI CTAG 3 cut(s) 219, 300, 305
MalI GATC 5 cut(s) 69, 89, 105, 352, 567
MboI GATC 5 cut(s) 67, 87, 103, 350, 565
MboII GAAGA 2 cut(s) 58, 113
MfeI CAATTG 1 cut(s) 524
MflI RGATCY 1 cut(s) 103
MluCI AATT 4 cut(s) 63, 194, 458, 524
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 2 cut(s) 364, 434
MnlI CCTC 4 cut(s) 152, 225, 387, 411
MroXI GAANNNNTTC 1 cut(s) 141
MseI TTAA 3 cut(s) 155, 474, 622
MslI CAYNNNNRTG 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 515
MspCI CTTAAG 2 cut(s) 154, 473
MspI CCGG 1 cut(s) 384
MspR9I CCNGG 1 cut(s) 384
MunI CAATTG 1 cut(s) 524
MwoI GCNNNNNNNGC 4 cut(s) 420, 512, 584, 605
NciI CCSGG 1 cut(s) 384
NdeII GATC 5 cut(s) 67, 87, 103, 350, 565
NlaIII CATG 3 cut(s) 149, 284, 440
NlaIV GGNNCC 1 cut(s) 116
NspI RCATGY 2 cut(s) 284, 440
PaqCI CACCTGC 1 cut(s) 569
PdmI GAANNNNTTC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 2 cut(s) 514, 517
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PpuMI RGGWCCY 1 cut(s) 374
Psp5II RGGWCCY 1 cut(s) 374
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 2 cut(s) 374, 529
PspPPI RGGWCCY 1 cut(s) 374
PstNI CAGNNNCTG 1 cut(s) 518
PsuI RGATCY 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 3 cut(s) 155, 474, 622
SatI GCNGC 2 cut(s) 513, 516
Sau3AI GATC 5 cut(s) 67, 87, 103, 350, 565
Sau96I GGNCC 2 cut(s) 374, 529
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 384
SfaNI GCATC 1 cut(s) 608
SfcI CTRYAG 2 cut(s) 594, 603
SinI GGWCC 2 cut(s) 374, 529
SmiMI CAYNNNNRTG 1 cut(s) 180
SmlI CTYRAG 2 cut(s) 154, 473
SmoI CTYRAG 2 cut(s) 154, 473
Sse9I AATT 4 cut(s) 63, 194, 458, 524
SsiI CCGC 2 cut(s) 247, 467
SspMI CTAG 3 cut(s) 219, 300, 305
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 1 cut(s) 272
TaqI TCGA 1 cut(s) 442
TasI AATT 4 cut(s) 63, 194, 458, 524
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 3 cut(s) 155, 474, 622
Tru9I TTAA 3 cut(s) 155, 474, 622
TseI GCWGC 2 cut(s) 512, 515
TspDTI ATGAA 1 cut(s) 134
Vha464I CTTAAG 2 cut(s) 154, 473
VpaK11BI GGWCC 2 cut(s) 374, 529
XceI RCATGY 2 cut(s) 284, 440
XmnI GAANNNNTTC 1 cut(s) 141
XspI CTAG 3 cut(s) 219, 300, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.