Prupe.3G076700_v2.0.a1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000146
Physical Location & Seq
Forward (+)
5638402 .. 5639352
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G076700.1

Sequence Viewer

Length: 951 bp
ATGGGAGATATAACAGATTCTTCTAATTCTCGGCCTCTTGTATCTCTTCCAGCCAATTCCAATCATCATCATGATTTGATGAATGTCCAGTTGTTGCCAACTAAGCTTGATGGCACCAATTATCTGGCTTGGTCTCATTTTGTGAGATTATATATTACTGGTAAAGGTCGGATTGGATATTTGACTGGAGAGAAGAAGCAACCAGATAATACTGACCCAAAGTTCATAACTTGGGTTGAAGAAGATGCTATGCTTAGATCATGGCTTCTCCAGGCTATGACCCCGGATATTAGTCTTGGCTATATGCGTCTCGACTCCGCTCATGCGATATGGGATGCGGTTTCTCAAACCTATTCTGAGGGAGGTTGTGATGCCCAGATTTATAAATTGAAACATCGGATCCAAGCCACTACTCAGCAAGGTAAGACGTTGGAGACATACTTTAATTCACTCCAAGCTTTATGGCAGGAACTTGATTATTATCAGCCGTGCGACATGAAGTGCTCTAATGATACTGCTGCGTTAAAAAAACGGATCGAGAAGGAACGTACTTTTGAGTTCTTGGCTGGTCTTAATCCGGATTTGGATCAAGTGAGAACACAGGTGCTTGGAAAGGATCCTTTTCCCTCTTTGCGTGAAGCCTATGCATACGTGCGTGCCCAAGCTCTCCGCCGATCTGCTATGGTTATGCCACCCTCTTTAGAAGGGTCTGCCTTGACTTCTACAGCAAACCATTCGGCTTGGGCACCACCAGTACATCAATCTAGTTCTTCAGCTGCTGTCTCATCTAGTAATGTTGCTAAGAGTTCGAAATCTGATGATAAGGATGCTTTGAAATGTGATTATTGTCATCAGACTAAGCATGTGAGAGAGCAATGTTTCAAGCTCAATGGTTATCTACCTTGGTGGCCTGGCAAGAAGGGTGAAAAAGCTGAAGGCAGCAAGGGAGGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs zf-CCHC

Protein Analysis

317

Amino Acids

35.51

Weight (kDa)

8.11

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 384
AccB1I GGYRCC 2 cut(s) 113, 745
AccBSI CCGCTC 1 cut(s) 320
AccIII TCCGGA 1 cut(s) 577
AciI CCGC 3 cut(s) 318, 338, 670
AclWI GGATC 6 cut(s) 394, 407, 542, 594, 611, 624
AcuI CTGAAG 1 cut(s) 756
AfaI GTAC 2 cut(s) 550, 756
AgsI TTSAA 4 cut(s) 239, 391, 835, 883
AjnI CCWGG 2 cut(s) 270, 910
AluBI AGCT 6 cut(s) 106, 458, 665, 776, 886, 932
AluI AGCT 6 cut(s) 106, 458, 665, 776, 886, 932
Alw21I GWGCWC 1 cut(s) 506
Alw26I GTCTC 4 cut(s) 138, 314, 428, 787
AlwI GGATC 6 cut(s) 394, 407, 542, 594, 611, 624
AlwNI CAGNNNCTG 1 cut(s) 779
Aor13HI TCCGGA 1 cut(s) 577
AoxI GGCC 2 cut(s) 32, 908
ApeKI GCWGC 3 cut(s) 518, 776, 939
AsuC2I CCSGG 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 935
AsuII TTCGAA 1 cut(s) 809
BaeGI GKGCMC 2 cut(s) 661, 748
BamHI GGATCC 2 cut(s) 399, 616
BanI GGYRCC 2 cut(s) 113, 745
Bbv12I GWGCWC 1 cut(s) 506
BbvI GCAGC 2 cut(s) 505, 763
BccI CCATC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 472
BcgI CGANNNNNNTGC 2 cut(s) 717, 751
BciT130I CCWGG 2 cut(s) 272, 912
BcnI CCSGG 1 cut(s) 284
BcoDI GTCTC 4 cut(s) 138, 314, 428, 787
BfaI CTAG 2 cut(s) 765, 789
BfmI CTRYAG 1 cut(s) 723
BisI GCNGC 3 cut(s) 519, 777, 940
BlsI GCNGC 3 cut(s) 520, 778, 941
Bme1390I CCNGG 3 cut(s) 272, 284, 912
BmiI GGNNCC 4 cut(s) 115, 401, 618, 747
BmrFI CCNGG 3 cut(s) 272, 284, 912
BmsI GCATC 4 cut(s) 235, 325, 361, 817
BpmI CTGGAG 2 cut(s) 207, 254
Bpu14I TTCGAA 1 cut(s) 809
BpuMI CCSGG 1 cut(s) 284
BsaAI YACGTR 1 cut(s) 652
BsaBI GATNNNNATC 2 cut(s) 480, 585
BsaI GGTCTC 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 282, 902
BsaWI WCCGGW 1 cut(s) 577
Bse1I ACTGG 4 cut(s) 88, 163, 190, 752
Bse3DI GCAATG 1 cut(s) 881
Bse8I GATNNNNATC 2 cut(s) 480, 585
BseAI TCCGGA 1 cut(s) 577
BseBI CCWGG 2 cut(s) 272, 912
BseDI CCNNGG 2 cut(s) 282, 902
BseGI GGATG 2 cut(s) 340, 832
BseJI GATNNNNATC 2 cut(s) 480, 585
BseMI GCAATG 1 cut(s) 881
BseMII CTCAG 2 cut(s) 348, 428
BseNI ACTGG 4 cut(s) 88, 163, 190, 752
BseSI GKGCMC 2 cut(s) 661, 748
BseXI GCAGC 2 cut(s) 505, 763
BshFI GGCC 2 cut(s) 34, 910
BshNI GGYRCC 2 cut(s) 113, 745
BsiHKAI GWGCWC 1 cut(s) 506
BsiSI CCGG 2 cut(s) 284, 578
BsmAI GTCTC 4 cut(s) 138, 314, 428, 787
BsmBI CGTCTC 1 cut(s) 314
BsnI GGCC 2 cut(s) 34, 910
Bso31I GGTCTC 1 cut(s) 138
Bsp119I TTCGAA 1 cut(s) 809
Bsp1286I GDGCHC 3 cut(s) 506, 661, 748
Bsp13I TCCGGA 1 cut(s) 577
Bsp143I GATC 6 cut(s) 257, 399, 534, 586, 616, 674
BspACI CCGC 3 cut(s) 318, 338, 670
BspANI GGCC 2 cut(s) 34, 910
BspCNI CTCAG 2 cut(s) 349, 427
BspEI TCCGGA 1 cut(s) 577
BspHI TCATGA 1 cut(s) 70
BspLI GGNNCC 4 cut(s) 115, 401, 618, 747
BspPI GGATC 6 cut(s) 394, 407, 542, 594, 611, 624
BspT104I TTCGAA 1 cut(s) 809
BspT107I GGYRCC 2 cut(s) 113, 745
BspTNI GGTCTC 1 cut(s) 138
BsrBI CCGCTC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 881
BsrI ACTGG 4 cut(s) 88, 163, 190, 752
BssECI CCNNGG 2 cut(s) 282, 902
BssMI GATC 6 cut(s) 257, 399, 534, 586, 616, 674
BssT1I CCWWGG 1 cut(s) 902
Bst2UI CCWGG 2 cut(s) 272, 912
Bst6I CTCTTC 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 652
BstBI TTCGAA 1 cut(s) 809
BstC8I GCNNGC 1 cut(s) 657
BstDEI CTNAG 6 cut(s) 102, 254, 357, 414, 801, 858
BstF5I GGATG 2 cut(s) 340, 832
BstKTI GATC 6 cut(s) 260, 402, 537, 589, 619, 677
BstMAI GTCTC 4 cut(s) 138, 314, 428, 787
BstMBI GATC 6 cut(s) 257, 399, 534, 586, 616, 674
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNI CCWGG 2 cut(s) 272, 912
BstNSI RCATGY 1 cut(s) 866
BstSCI CCNGG 3 cut(s) 270, 282, 910
BstSFI CTRYAG 1 cut(s) 723
BstSLI GKGCMC 2 cut(s) 661, 748
BstV1I GCAGC 2 cut(s) 505, 763
BstX2I RGATCY 2 cut(s) 399, 616
BstXI CCANNNNNNTGG 1 cut(s) 124
BstYI RGATCY 2 cut(s) 399, 616
BsuRI GGCC 2 cut(s) 34, 910
BtsCI GGATG 2 cut(s) 340, 832
Cac8I GCNNGC 1 cut(s) 657
CaiI CAGNNNCTG 1 cut(s) 779
CciI TCATGA 1 cut(s) 70
CseI GACGC 1 cut(s) 296
Csp6I GTAC 2 cut(s) 549, 755
CviAII CATG 5 cut(s) 71, 261, 323, 496, 863
CviQI GTAC 2 cut(s) 549, 755
DdeI CTNAG 6 cut(s) 102, 254, 357, 414, 801, 858
DpnI GATC 6 cut(s) 259, 401, 536, 588, 618, 676
DpnII GATC 6 cut(s) 257, 399, 534, 586, 616, 674
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
EciI GGCGGA 1 cut(s) 659
Eco130I CCWWGG 1 cut(s) 902
Eco31I GGTCTC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 756
EcoRII CCWGG 2 cut(s) 270, 910
EcoT14I CCWWGG 1 cut(s) 902
EcoT22I ATGCAT 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 902
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 5 cut(s) 74, 264, 326, 499, 866
FatI CATG 5 cut(s) 70, 260, 322, 495, 862
Fnu4HI GCNGC 3 cut(s) 519, 777, 940
FokI GGATG 2 cut(s) 347, 839
Fsp4HI GCNGC 3 cut(s) 519, 777, 940
FspBI CTAG 2 cut(s) 765, 789
GluI GCNGC 3 cut(s) 519, 777, 940
GsuI CTGGAG 2 cut(s) 207, 254
HaeIII GGCC 2 cut(s) 34, 910
HapII CCGG 2 cut(s) 284, 578
HgaI GACGC 1 cut(s) 296
Hin1II CATG 5 cut(s) 74, 264, 326, 499, 866
HindIII AAGCTT 2 cut(s) 104, 456
HinfI GANTC 2 cut(s) 17, 314
HpaII CCGG 2 cut(s) 284, 578
HphI GGTGA 1 cut(s) 935
Hpy188I TCNGA 5 cut(s) 171, 358, 399, 817, 855
Hpy188III TCNNGA 4 cut(s) 71, 311, 538, 578
HpyAV CCTTC 4 cut(s) 535, 698, 913, 929
HpyCH4IV ACGT 3 cut(s) 428, 547, 651
HpyCH4V TGCA 1 cut(s) 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 6 cut(s) 102, 254, 357, 414, 801, 858
HpySE526I ACGT 3 cut(s) 428, 547, 651
Hsp92II CATG 5 cut(s) 74, 264, 326, 499, 866
Kpn2I TCCGGA 1 cut(s) 577
Kzo9I GATC 6 cut(s) 257, 399, 534, 586, 616, 674
Lsp1109I GCAGC 2 cut(s) 505, 763
LweI GCATC 4 cut(s) 235, 325, 361, 817
MaeI CTAG 2 cut(s) 765, 789
MaeII ACGT 3 cut(s) 428, 547, 651
MalI GATC 6 cut(s) 259, 401, 536, 588, 618, 676
MbiI CCGCTC 1 cut(s) 320
MboI GATC 6 cut(s) 257, 399, 534, 586, 616, 674
MboII GAAGA 6 cut(s) 12, 38, 205, 251, 254, 762
MflI RGATCY 2 cut(s) 399, 616
MhlI GDGCHC 3 cut(s) 506, 661, 748
MluCI AATT 5 cut(s) 25, 55, 118, 386, 445
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 2 cut(s) 149, 411
MnlI CCTC 6 cut(s) 45, 352, 356, 637, 706, 941
Mph1103I ATGCAT 1 cut(s) 649
MroI TCCGGA 1 cut(s) 577
MseI TTAA 3 cut(s) 444, 524, 573
MslI CAYNNNNRTG 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 776
MspI CCGG 2 cut(s) 284, 578
MspR9I CCNGG 3 cut(s) 272, 284, 912
MvaI CCWGG 2 cut(s) 272, 912
MwoI GCNNNNNNNGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 284
NdeII GATC 6 cut(s) 257, 399, 534, 586, 616, 674
NlaIII CATG 5 cut(s) 74, 264, 326, 499, 866
NlaIV GGNNCC 4 cut(s) 115, 401, 618, 747
NmeAIII GCCGAG 1 cut(s) 10
NsiI ATGCAT 1 cut(s) 649
NspI RCATGY 1 cut(s) 866
NspV TTCGAA 1 cut(s) 809
PagI TCATGA 1 cut(s) 70
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 3 cut(s) 520, 778, 941
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
Ppu21I YACGTR 1 cut(s) 652
PsiI TTATAA 1 cut(s) 384
Psp6I CCWGG 2 cut(s) 270, 910
PspGI CCWGG 2 cut(s) 270, 910
PspN4I GGNNCC 4 cut(s) 115, 401, 618, 747
PstNI CAGNNNCTG 1 cut(s) 779
PsuI RGATCY 2 cut(s) 399, 616
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 2 cut(s) 550, 756
RsaNI GTAC 2 cut(s) 549, 755
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 3 cut(s) 444, 524, 573
SatI GCNGC 3 cut(s) 519, 777, 940
Sau3AI GATC 6 cut(s) 257, 399, 534, 586, 616, 674
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 3 cut(s) 272, 284, 912
SduI GDGCHC 3 cut(s) 506, 661, 748
SfaNI GCATC 4 cut(s) 235, 325, 361, 817
SfcI CTRYAG 1 cut(s) 723
SfuI TTCGAA 1 cut(s) 809
SmiMI CAYNNNNRTG 1 cut(s) 69
Sse9I AATT 5 cut(s) 25, 55, 118, 386, 445
SsiI CCGC 3 cut(s) 318, 338, 670
SspMI CTAG 2 cut(s) 765, 789
StyD4I CCNGG 3 cut(s) 270, 282, 910
StyI CCWWGG 1 cut(s) 902
TaiI ACGT 3 cut(s) 431, 550, 654
TaqI TCGA 3 cut(s) 312, 537, 809
TasI AATT 5 cut(s) 25, 55, 118, 386, 445
TatI WGTACW 1 cut(s) 754
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 3 cut(s) 444, 524, 573
Tru9I TTAA 3 cut(s) 444, 524, 573
TseI GCWGC 3 cut(s) 518, 776, 939
TspDTI ATGAA 3 cut(s) 95, 214, 512
TspGWI ACGGA 1 cut(s) 547
XceI RCATGY 1 cut(s) 866
XspI CTAG 2 cut(s) 765, 789
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.