Rmu_sc0000796.1_g000030
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000796.1
OG0000146
Physical Location & Seq
Reverse (-)
134029 .. 134667
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000796.1_g000030.1.cds

Sequence Viewer

Length: 639 bp
atggtggacttgaagatcactaacgggaaaagtggagaatcccaggagtctggagcaacaagttctgtggcgcgtgaagttgtaattgttcagaatgtcacagataattcgatttttggtgtcaaactcgatggtaccaattatcagttatggcagagacttatcaagatccatattcaggggattggaaagtggagttatgttaccggtagtgcagcaggtccaaaagttgatgaatgggatacggcaaataataatgtgatgggaattcttctcaaagctatgactccggaggtaattagattatttgctaactatgattctcccaaatcaatttgggattctgttgctgctacatattatgatgggagtgattttgcacgtgttcatgaattgaatgtcaaagtttttaaaataactcaaagtggacagcctgttgcaaccttttatgcgaatttgaagacaatttggcaggagcttgatcagagaaaccctaatcctatgacttgtgcagctaatattaattcctatcggactgaacaggacaagatgatgtccatatttttcttgctggcctggatcctcattttgaaggggcaaagaatgagtattttgaagggactgaacaggacaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

212

Amino Acids

23.8

Weight (kDa)

9.12

Isoelectric Point (pI)

29.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 209
Acc65I GGTACC 1 cut(s) 134
AccB1I GGYRCC 1 cut(s) 134
AccII CGCG 1 cut(s) 73
AccIII TCCGGA 1 cut(s) 289
AclWI GGATC 3 cut(s) 163, 574, 587
AcsI RAATTY 2 cut(s) 267, 454
AcvI CACGTG 1 cut(s) 383
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 178
AflIII ACRYGT 1 cut(s) 382
AgeI ACCGGT 1 cut(s) 206
AgsI TTSAA 5 cut(s) 13, 397, 460, 592, 616
AjnI CCWGG 2 cut(s) 42, 575
AluBI AGCT 3 cut(s) 281, 478, 515
AluI AGCT 3 cut(s) 281, 478, 515
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 3 cut(s) 163, 574, 587
Aor13HI TCCGGA 1 cut(s) 289
AoxI GGCC 1 cut(s) 573
ApeKI GCWGC 3 cut(s) 215, 350, 512
ApoI RAATTY 2 cut(s) 267, 454
AseI ATTAAT 1 cut(s) 522
AsiGI ACCGGT 1 cut(s) 206
Asp718I GGTACC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 221
AvaII GGWCC 1 cut(s) 221
BamHI GGATCC 1 cut(s) 579
BanI GGYRCC 1 cut(s) 134
BbrPI CACGTG 1 cut(s) 383
BbsI GAAGAC 1 cut(s) 467
BbvI GCAGC 3 cut(s) 227, 337, 524
BccI CCATC 3 cut(s) 125, 256, 359
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 2 cut(s) 44, 577
BciVI GTATCC 1 cut(s) 235
BclI TGATCA 1 cut(s) 481
BcoDI GTCTC 1 cut(s) 151
BfuAI ACCTGC 1 cut(s) 209
BfuI GTATCC 1 cut(s) 235
BisI GCNGC 3 cut(s) 216, 351, 513
BlsI GCNGC 3 cut(s) 217, 352, 514
Bme1390I CCNGG 2 cut(s) 44, 577
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 2 cut(s) 136, 581
BmrFI CCNGG 2 cut(s) 44, 577
BpiI GAAGAC 1 cut(s) 467
BpmI CTGGAG 1 cut(s) 72
BsaAI YACGTR 1 cut(s) 383
BsaJI CCNNGG 1 cut(s) 42
BsaWI WCCGGW 2 cut(s) 206, 289
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse118I RCCGGY 1 cut(s) 206
BseAI TCCGGA 1 cut(s) 289
BseBI CCWGG 2 cut(s) 44, 577
BseDI CCNNGG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 178
BseXI GCAGC 3 cut(s) 227, 337, 524
BsgI GTGCAG 2 cut(s) 234, 531
Bsh1236I CGCG 1 cut(s) 73
BshFI GGCC 1 cut(s) 575
BshNI GGYRCC 1 cut(s) 134
BshTI ACCGGT 1 cut(s) 206
BsiSI CCGG 2 cut(s) 207, 290
BslFI GGGAC 1 cut(s) 633
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 633
BsnI GGCC 1 cut(s) 575
Bsp13I TCCGGA 1 cut(s) 289
Bsp143I GATC 4 cut(s) 15, 168, 481, 579
BspANI GGCC 1 cut(s) 575
BspEI TCCGGA 1 cut(s) 289
BspFNI CGCG 1 cut(s) 73
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 136, 581
BspMI ACCTGC 1 cut(s) 209
BspPI GGATC 3 cut(s) 163, 574, 587
BspT107I GGYRCC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 4 cut(s) 15, 168, 481, 579
Bst2UI CCWGG 2 cut(s) 44, 577
BstBAI YACGTR 1 cut(s) 383
BstC8I GCNNGC 1 cut(s) 573
BstFNI CGCG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 4 cut(s) 18, 171, 484, 582
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 4 cut(s) 15, 168, 481, 579
BstNI CCWGG 2 cut(s) 44, 577
BstSCI CCNGG 2 cut(s) 42, 575
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 3 cut(s) 227, 337, 524
BstV2I GAAGAC 1 cut(s) 467
BstX2I RGATCY 2 cut(s) 168, 579
BstXI CCANNNNNNTGG 1 cut(s) 50
BstYI RGATCY 2 cut(s) 168, 579
BsuI GTATCC 1 cut(s) 235
BsuRI GGCC 1 cut(s) 575
BveI ACCTGC 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 573
CciI TCATGA 1 cut(s) 388
CfoI GCGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 135
CspAI ACCGGT 1 cut(s) 206
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 1 cut(s) 389
CviJI RGCY 5 cut(s) 281, 433, 478, 515, 575
CviKI_1 RGCY 5 cut(s) 281, 433, 478, 515, 575
CviQI GTAC 1 cut(s) 135
DpnI GATC 4 cut(s) 17, 170, 483, 581
DpnII GATC 4 cut(s) 15, 168, 481, 579
DraI TTTAAA 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 221
Eco72I CACGTG 1 cut(s) 383
EcoRI GAATTC 1 cut(s) 267
EcoRII CCWGG 2 cut(s) 42, 575
FaeI CATG 1 cut(s) 392
FaqI GGGAC 1 cut(s) 633
FatI CATG 1 cut(s) 388
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 3 cut(s) 216, 351, 513
Fsp4HI GCNGC 3 cut(s) 216, 351, 513
GlaI GCGC 1 cut(s) 72
GluI GCNGC 3 cut(s) 216, 351, 513
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 1 cut(s) 575
HapII CCGG 2 cut(s) 207, 290
HhaI GCGC 1 cut(s) 73
Hin1II CATG 1 cut(s) 392
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 5 cut(s) 38, 47, 286, 320, 341
HpaII CCGG 2 cut(s) 207, 290
Hpy166II GTNNAC 2 cut(s) 7, 428
Hpy188I TCNGA 3 cut(s) 93, 486, 534
Hpy188III TCNNGA 4 cut(s) 51, 166, 290, 389
Hpy8I GTNNAC 2 cut(s) 7, 428
HpyAV CCTTC 2 cut(s) 586, 610
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 4 cut(s) 215, 380, 440, 512
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 1 cut(s) 392
HspAI GCGC 1 cut(s) 71
Kpn2I TCCGGA 1 cut(s) 289
KpnI GGTACC 1 cut(s) 138
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 4 cut(s) 15, 168, 481, 579
LmnI GCTCC 2 cut(s) 53, 475
Lsp1109I GCAGC 3 cut(s) 227, 337, 524
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 2 cut(s) 97, 202
MalI GATC 4 cut(s) 17, 170, 483, 581
MboI GATC 4 cut(s) 15, 168, 481, 579
MboII GAAGA 3 cut(s) 25, 263, 472
MflI RGATCY 2 cut(s) 168, 579
MlyI GAGTC 2 cut(s) 56, 280
MnlI CCTC 2 cut(s) 286, 593
MroI TCCGGA 1 cut(s) 289
MseI TTAA 2 cut(s) 411, 522
MspI CCGG 2 cut(s) 207, 290
MspR9I CCNGG 2 cut(s) 44, 577
MvaI CCWGG 2 cut(s) 44, 577
MvnI CGCG 1 cut(s) 73
NdeII GATC 4 cut(s) 15, 168, 481, 579
NlaIII CATG 1 cut(s) 392
NlaIV GGNNCC 2 cut(s) 136, 581
NmuCI GTSAC 1 cut(s) 97
PagI TCATGA 1 cut(s) 388
PfeI GAWTC 3 cut(s) 38, 320, 341
PinAI ACCGGT 1 cut(s) 206
PkrI GCNGC 3 cut(s) 217, 352, 514
PleI GAGTC 2 cut(s) 55, 280
PmaCI CACGTG 1 cut(s) 383
PmlI CACGTG 1 cut(s) 383
PpsI GAGTC 2 cut(s) 55, 280
Ppu21I YACGTR 1 cut(s) 383
PshBI ATTAAT 1 cut(s) 522
Psp6I CCWGG 2 cut(s) 42, 575
PspCI CACGTG 1 cut(s) 383
PspGI CCWGG 2 cut(s) 42, 575
PspN4I GGNNCC 2 cut(s) 136, 581
PspPI GGNCC 1 cut(s) 221
PsuI RGATCY 2 cut(s) 168, 579
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SaqAI TTAA 2 cut(s) 411, 522
SatI GCNGC 3 cut(s) 216, 351, 513
Sau3AI GATC 4 cut(s) 15, 168, 481, 579
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 2 cut(s) 56, 280
ScrFI CCNGG 2 cut(s) 44, 577
SetI ASST 7 cut(s) 223, 283, 297, 385, 446, 480, 517
SinI GGWCC 1 cut(s) 221
SspI AATATT 1 cut(s) 520
StyD4I CCNGG 2 cut(s) 42, 575
TaiI ACGT 1 cut(s) 385
TaqI TCGA 2 cut(s) 110, 129
TfiI GAWTC 3 cut(s) 38, 320, 341
Tru1I TTAA 2 cut(s) 411, 522
Tru9I TTAA 2 cut(s) 411, 522
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 3 cut(s) 215, 350, 512
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 3 cut(s) 249, 377, 405
VpaK11BI GGWCC 1 cut(s) 221
VspI ATTAAT 1 cut(s) 522
XapI RAATTY 2 cut(s) 267, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.