Rmu_sc0002858.1_g000016
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002858.1
OG0000146
Physical Location & Seq
Forward (+)
64520 .. 64906
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002858.1_g000016.1.cds

Sequence Viewer

Length: 387 bp
atgtacaaagctacaggaatgcaacagaatgggcaaccagtgtcagtgttttttaccaagctgaagaatgtatgggctgaaattgatcagaagcatccttgcaagatcaagaatcaggcagatattgcatggtaccggaaagaaaaggaacttgaatgggttcatgcattcttgcgaggacttgatgcaaaatataacagtgccaaaggagaattgcttagaatgccagatcctcctagcttgaccacagcttttacatacattcgtaaggatgagtctcagcaggaaagtcccaaacaggcacaagttaaagtatccagcctagctattcaggcacctgcgccttttcttcatcagcagagatcagtcccagttcatcagcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

128

Amino Acids

14.72

Weight (kDa)

9.52

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 346
Acc36I ACCTGC 1 cut(s) 346
Acc65I GGTACC 1 cut(s) 132
AccB1I GGYRCC 2 cut(s) 132, 334
AclWI GGATC 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 2 cut(s) 5, 134
AgsI TTSAA 1 cut(s) 155
AluBI AGCT 5 cut(s) 11, 61, 240, 251, 326
AluI AGCT 5 cut(s) 11, 61, 240, 251, 326
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 1 cut(s) 224
Asp700I GAANNNNTTC 1 cut(s) 159
Asp718I GGTACC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 343
BanI GGYRCC 2 cut(s) 132, 334
BciVI GTATCC 1 cut(s) 325
BclI TGATCA 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 2 cut(s) 237, 323
BfmI CTRYAG 1 cut(s) 12
BfuAI ACCTGC 1 cut(s) 346
BfuI GTATCC 1 cut(s) 325
BmiI GGNNCC 2 cut(s) 134, 336
BmrI ACTGGG 1 cut(s) 365
BmsI GCATC 2 cut(s) 103, 175
BmuI ACTGGG 1 cut(s) 365
BsaWI WCCGGW 1 cut(s) 135
Bse1I ACTGG 2 cut(s) 38, 371
BseGI GGATG 2 cut(s) 94, 277
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 2 cut(s) 38, 371
BshNI GGYRCC 2 cut(s) 132, 334
BsiSI CCGG 1 cut(s) 136
BslFI GGGAC 2 cut(s) 276, 353
BsmAI GTCTC 1 cut(s) 282
BsmFI GGGAC 2 cut(s) 276, 353
BsmI GAATGC 3 cut(s) 24, 167, 228
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 4 cut(s) 85, 105, 229, 362
BspCNI CTCAG 1 cut(s) 292
BspLI GGNNCC 2 cut(s) 134, 336
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 1 cut(s) 224
BspT107I GGYRCC 2 cut(s) 132, 334
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 38, 371
BssMI GATC 4 cut(s) 85, 105, 229, 362
Bst4CI ACNGT 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 2 cut(s) 218, 279
BstF5I GGATG 2 cut(s) 94, 277
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 4 cut(s) 88, 108, 232, 365
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 4 cut(s) 85, 105, 229, 362
BstMWI GCNNNNNNNGC 3 cut(s) 125, 223, 332
BstSFI CTRYAG 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuI GTATCC 1 cut(s) 325
BtsCI GGATG 2 cut(s) 94, 277
BtsIMutI CAGTG 3 cut(s) 45, 51, 205
BveI ACCTGC 1 cut(s) 346
CfoI GCGC 1 cut(s) 343
Csp6I GTAC 2 cut(s) 4, 133
CviAII CATG 2 cut(s) 129, 164
CviJI RGCY 7 cut(s) 11, 61, 77, 240, 251, 321, 326
CviKI_1 RGCY 7 cut(s) 11, 61, 77, 240, 251, 321, 326
CviQI GTAC 2 cut(s) 4, 133
DdeI CTNAG 2 cut(s) 218, 279
DpnI GATC 4 cut(s) 87, 107, 231, 364
DpnII GATC 4 cut(s) 85, 105, 229, 362
Eco57I CTGAAG 1 cut(s) 83
EcoT22I ATGCAT 1 cut(s) 169
FaeI CATG 2 cut(s) 132, 167
FaiI YATR 5 cut(s) 73, 130, 165, 195, 259
FaqI GGGAC 2 cut(s) 276, 353
FatI CATG 2 cut(s) 128, 163
FbaI TGATCA 1 cut(s) 85
FokI GGATG 2 cut(s) 81, 284
FspBI CTAG 2 cut(s) 237, 323
GlaI GCGC 1 cut(s) 342
HapII CCGG 1 cut(s) 136
HhaI GCGC 1 cut(s) 343
Hin1II CATG 2 cut(s) 132, 167
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HinfI GANTC 2 cut(s) 112, 275
HpaII CCGG 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4V TGCA 5 cut(s) 22, 102, 128, 167, 188
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 223, 332
HpyF3I CTNAG 2 cut(s) 218, 279
Hsp92II CATG 2 cut(s) 132, 167
HspAI GCGC 1 cut(s) 341
KpnI GGTACC 1 cut(s) 136
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 4 cut(s) 85, 105, 229, 362
LpnPI CCDG 9 cut(s) 51, 101, 149, 240, 269, 284, 317, 331, 351
LweI GCATC 2 cut(s) 103, 175
MaeI CTAG 2 cut(s) 237, 323
MalI GATC 4 cut(s) 87, 107, 231, 364
MboI GATC 4 cut(s) 85, 105, 229, 362
MboII GAAGA 2 cut(s) 76, 341
MflI RGATCY 1 cut(s) 229
MluCI AATT 2 cut(s) 81, 212
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 2 cut(s) 170, 243
Mph1103I ATGCAT 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 1 cut(s) 309
MspI CCGG 1 cut(s) 136
Mva1269I GAATGC 3 cut(s) 24, 167, 228
MwoI GCNNNNNNNGC 3 cut(s) 125, 223, 332
NdeII GATC 4 cut(s) 85, 105, 229, 362
NlaIII CATG 2 cut(s) 132, 167
NlaIV GGNNCC 2 cut(s) 134, 336
NsiI ATGCAT 1 cut(s) 169
PaqCI CACCTGC 1 cut(s) 346
PctI GAATGC 3 cut(s) 24, 167, 228
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 112
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PspN4I GGNNCC 2 cut(s) 134, 336
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 2 cut(s) 5, 134
RsaNI GTAC 2 cut(s) 4, 133
SaqAI TTAA 1 cut(s) 309
Sau3AI GATC 4 cut(s) 85, 105, 229, 362
SchI GAGTC 1 cut(s) 284
SetI ASST 6 cut(s) 13, 63, 242, 253, 328, 340
SfaNI GCATC 2 cut(s) 103, 175
SfcI CTRYAG 1 cut(s) 12
Sse9I AATT 2 cut(s) 81, 212
SspMI CTAG 2 cut(s) 237, 323
TaaI ACNGT 1 cut(s) 200
TasI AATT 2 cut(s) 81, 212
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 3 cut(s) 45, 51, 205
TspDTI ATGAA 3 cut(s) 152, 341, 365
TspRI CASTG 3 cut(s) 45, 51, 205
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 2 cut(s) 237, 323
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.