Prupe.6G115900_v2.0.a1

transposition, RNA-mediated

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
8447780 .. 8448904
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G115900.1

Sequence Viewer

Length: 1002 bp
ATGGAAGATACAACAAATTCTTCTAATTCTCGGCCTCTTATATCTCTTCCAGCCAATTCCAATCATCACGATTTGATGAATGTCCAGTTGTTGCCAACTAAGCTTGATGGCACCAATTATCTGGCTTGGTCTCATTTTGTGAGATTATATATTACCGGTAAAGGTCGGATTGGATATTTGACTGGAGAGAAGAAGCAACCAGATGATACTGACCCAAAGTTCATAACATGGGTTGAAGAAGATGCTATGCTTAGATCATGGCTTCTCCAGGCTATGACCCCGGATATTAGTCTTGGCTATATGCGTCTCGACTCCGAGCATGCTATATGGGATGCGGTTTCTCAAACCTATTATGAGGGAGGTTGTGATGCCCAGATTTATGAATTGAAACCTTTATGGCAGGAACTTGATTATTATCAGCCGTGCGACATGAAGTGTTCTAACGATACCGCTGCGTTGAAAAAATGGATCGAGAAGGAACGTACCTTTGAGTTATTGGCTAGTCTTAATCTGGATTTGGATCAAGTGAGAATACAGGTGCTTGGAAAGGATCCTTTTCCCTCTTTGCGTGAAGCCTATGCATATGTGCATGCCCAAGCTCTCCACCGATCTACCATGGTTATGCCACCCTCTTTAGAAGGTTATTCAGCTGCTGTCTCATCTGGTAATGTTGCTAAGAGTTCGAAATCTGATGATAAGGATGATTTGAAATGTGATTATTGTCATCAGACTAAGCATGTGAGAGAGCACTGTTTCAAGCTCAATGGTTATCCACCTTGGTGGCCTGGCAAGAAGGGTGAAAAAGCTGAAGGCAGCAAGAGAGGAGGCGGAAAAAGGAGCCGTTCCAGCTCCAAAGCCTATCACACATCTTCTAGTGATCAGAATGACCAACCCACATCTCAGCTTTCTTCTGCTCAAATGGAACAAATCGCTCAAGAGTGTGCTCGCTTGCTCTCTGATAAAGGATCTAAAGGGGCTTCCATTTCCTTAGCCACCTCATCA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

334

Amino Acids

37.49

Weight (kDa)

6.21

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AciI CCGC 3 cut(s) 335, 450, 828
AclWI GGATC 5 cut(s) 476, 528, 545, 558, 973
AcsI RAATTY 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 828
AfaI GTAC 1 cut(s) 484
AgeI ACCGGT 1 cut(s) 155
AgsI TTSAA 5 cut(s) 236, 388, 460, 709, 757
AjnI CCWGG 2 cut(s) 267, 784
AleI CACNNNNGTG 1 cut(s) 778
AluBI AGCT 7 cut(s) 103, 599, 650, 760, 806, 849, 904
AluI AGCT 7 cut(s) 103, 599, 650, 760, 806, 849, 904
Alw21I GWGCWC 2 cut(s) 750, 946
Alw26I GTCTC 3 cut(s) 135, 311, 661
AlwI GGATC 5 cut(s) 476, 528, 545, 558, 973
AlwNI CAGNNNCTG 1 cut(s) 653
AoxI GGCC 2 cut(s) 32, 782
ApeKI GCWGC 3 cut(s) 452, 650, 813
ApoI RAATTY 1 cut(s) 16
AsiGI ACCGGT 1 cut(s) 155
AsuC2I CCSGG 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 809
AsuII TTCGAA 1 cut(s) 683
BamHI GGATCC 1 cut(s) 550
BanI GGYRCC 1 cut(s) 110
Bbv12I GWGCWC 2 cut(s) 750, 946
BbvI GCAGC 3 cut(s) 439, 637, 825
BccI CCATC 1 cut(s) 101
BceAI ACGGC 2 cut(s) 406, 825
BcgI CGANNNNNNTGC 2 cut(s) 434, 468
BciT130I CCWGG 2 cut(s) 269, 786
BclI TGATCA 1 cut(s) 877
BcnI CCSGG 1 cut(s) 281
BcoDI GTCTC 3 cut(s) 135, 311, 661
BfaI CTAG 2 cut(s) 501, 873
BisI GCNGC 3 cut(s) 453, 651, 814
BlsI GCNGC 3 cut(s) 454, 652, 815
Bme1390I CCNGG 3 cut(s) 269, 281, 786
BmiI GGNNCC 3 cut(s) 112, 552, 839
BmrFI CCNGG 3 cut(s) 269, 281, 786
BmsI GCATC 3 cut(s) 232, 322, 358
BpmI CTGGAG 2 cut(s) 204, 251
Bpu10I CCTNAGC 1 cut(s) 988
Bpu14I TTCGAA 1 cut(s) 683
BpuEI CTTGAG 1 cut(s) 918
BpuMI CCSGG 1 cut(s) 281
BsaBI GATNNNNATC 2 cut(s) 414, 519
BsaI GGTCTC 1 cut(s) 135
BsaJI CCNNGG 3 cut(s) 279, 615, 776
BsaWI WCCGGW 1 cut(s) 155
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 2 cut(s) 85, 187
Bse8I GATNNNNATC 2 cut(s) 414, 519
BseBI CCWGG 2 cut(s) 269, 786
BseDI CCNNGG 3 cut(s) 279, 615, 776
BseGI GGATG 2 cut(s) 337, 706
BseJI GATNNNNATC 2 cut(s) 414, 519
BseMII CTCAG 1 cut(s) 914
BseNI ACTGG 2 cut(s) 85, 187
BseRI GAGGAG 1 cut(s) 837
BseXI GCAGC 3 cut(s) 439, 637, 825
BshFI GGCC 2 cut(s) 34, 784
BshNI GGYRCC 1 cut(s) 110
BshTI ACCGGT 1 cut(s) 155
BsiHKAI GWGCWC 2 cut(s) 750, 946
BsiSI CCGG 2 cut(s) 156, 281
BsmAI GTCTC 3 cut(s) 135, 311, 661
BsmBI CGTCTC 1 cut(s) 311
BsnI GGCC 2 cut(s) 34, 784
Bso31I GGTCTC 1 cut(s) 135
Bsp119I TTCGAA 1 cut(s) 683
Bsp1286I GDGCHC 2 cut(s) 750, 946
Bsp143I GATC 7 cut(s) 254, 468, 520, 550, 608, 877, 965
Bsp19I CCATGG 1 cut(s) 615
BspACI CCGC 3 cut(s) 335, 450, 828
BspANI GGCC 2 cut(s) 34, 784
BspCNI CTCAG 1 cut(s) 913
BspLI GGNNCC 3 cut(s) 112, 552, 839
BspPI GGATC 5 cut(s) 476, 528, 545, 558, 973
BspT104I TTCGAA 1 cut(s) 683
BspT107I GGYRCC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 2 cut(s) 85, 187
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 3 cut(s) 279, 615, 776
BssMI GATC 7 cut(s) 254, 468, 520, 550, 608, 877, 965
BssT1I CCWWGG 2 cut(s) 615, 776
Bst2UI CCWGG 2 cut(s) 269, 786
Bst4CI ACNGT 1 cut(s) 752
Bst6I CTCTTC 1 cut(s) 51
BstBI TTCGAA 1 cut(s) 683
BstC8I GCNNGC 4 cut(s) 321, 591, 946, 950
BstDEI CTNAG 6 cut(s) 99, 251, 675, 732, 900, 988
BstDSI CCRYGG 1 cut(s) 615
BstF5I GGATG 2 cut(s) 337, 706
BstKTI GATC 7 cut(s) 257, 471, 523, 553, 611, 880, 968
BstMAI GTCTC 3 cut(s) 135, 311, 661
BstMBI GATC 7 cut(s) 254, 468, 520, 550, 608, 877, 965
BstMWI GCNNNNNNNGC 2 cut(s) 100, 846
BstNI CCWGG 2 cut(s) 269, 786
BstNSI RCATGY 3 cut(s) 323, 593, 740
BstSCI CCNGG 3 cut(s) 267, 279, 784
BstV1I GCAGC 3 cut(s) 439, 637, 825
BstX2I RGATCY 2 cut(s) 550, 965
BstXI CCANNNNNNTGG 2 cut(s) 121, 780
BstYI RGATCY 2 cut(s) 550, 965
BsuRI GGCC 2 cut(s) 34, 784
BtgI CCRYGG 1 cut(s) 615
BtsCI GGATG 2 cut(s) 337, 706
BtsIMutI CAGTG 1 cut(s) 748
Cac8I GCNNGC 4 cut(s) 321, 591, 946, 950
CaiI CAGNNNCTG 1 cut(s) 653
Cfr10I RCCGGY 1 cut(s) 155
CseI GACGC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 483
CspAI ACCGGT 1 cut(s) 155
CviAII CATG 7 cut(s) 228, 258, 320, 430, 590, 616, 737
CviQI GTAC 1 cut(s) 483
DdeI CTNAG 6 cut(s) 99, 251, 675, 732, 900, 988
DpnI GATC 7 cut(s) 256, 470, 522, 552, 610, 879, 967
DpnII GATC 7 cut(s) 254, 468, 520, 550, 608, 877, 965
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
EciI GGCGGA 1 cut(s) 843
Eco130I CCWWGG 2 cut(s) 615, 776
Eco31I GGTCTC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 828
EcoRII CCWGG 2 cut(s) 267, 784
EcoT14I CCWWGG 2 cut(s) 615, 776
EcoT22I ATGCAT 1 cut(s) 583
ErhI CCWWGG 2 cut(s) 615, 776
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 7 cut(s) 231, 261, 323, 433, 593, 619, 740
FatI CATG 7 cut(s) 227, 257, 319, 429, 589, 615, 736
FauNDI CATATG 1 cut(s) 583
FbaI TGATCA 1 cut(s) 877
Fnu4HI GCNGC 3 cut(s) 453, 651, 814
FokI GGATG 2 cut(s) 344, 713
Fsp4HI GCNGC 3 cut(s) 453, 651, 814
FspBI CTAG 2 cut(s) 501, 873
GluI GCNGC 3 cut(s) 453, 651, 814
GsuI CTGGAG 2 cut(s) 204, 251
HaeIII GGCC 2 cut(s) 34, 784
HapII CCGG 2 cut(s) 156, 281
HgaI GACGC 1 cut(s) 293
Hin1II CATG 7 cut(s) 231, 261, 323, 433, 593, 619, 740
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 1 cut(s) 311
HpaII CCGG 2 cut(s) 156, 281
HphI GGTGA 1 cut(s) 809
Hpy188I TCNGA 6 cut(s) 168, 316, 691, 729, 882, 958
Hpy188III TCNNGA 5 cut(s) 68, 308, 472, 512, 935
HpyAV CCTTC 4 cut(s) 469, 632, 787, 803
HpyCH4III ACNGT 1 cut(s) 752
HpyCH4IV ACGT 1 cut(s) 481
HpyCH4V TGCA 2 cut(s) 581, 589
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 846
HpyF3I CTNAG 6 cut(s) 99, 251, 675, 732, 900, 988
HpySE526I ACGT 1 cut(s) 481
Hsp92II CATG 7 cut(s) 231, 261, 323, 433, 593, 619, 740
Ksp22I TGATCA 1 cut(s) 877
Kzo9I GATC 7 cut(s) 254, 468, 520, 550, 608, 877, 965
LmnI GCTCC 2 cut(s) 837, 854
Lsp1109I GCAGC 3 cut(s) 439, 637, 825
LweI GCATC 3 cut(s) 232, 322, 358
MaeI CTAG 2 cut(s) 501, 873
MaeII ACGT 1 cut(s) 481
MalI GATC 7 cut(s) 256, 470, 522, 552, 610, 879, 967
MboI GATC 7 cut(s) 254, 468, 520, 550, 608, 877, 965
MboII GAAGA 8 cut(s) 12, 17, 38, 202, 248, 251, 861, 900
MflI RGATCY 2 cut(s) 550, 965
MhlI GDGCHC 2 cut(s) 750, 946
MluCI AATT 5 cut(s) 16, 25, 55, 115, 383
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 7 cut(s) 45, 349, 353, 571, 640, 815, 818
Mph1103I ATGCAT 1 cut(s) 583
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 2 cut(s) 620, 778
MspA1I CMGCKG 2 cut(s) 452, 650
MspI CCGG 2 cut(s) 156, 281
MspR9I CCNGG 3 cut(s) 269, 281, 786
MvaI CCWGG 2 cut(s) 269, 786
MwoI GCNNNNNNNGC 2 cut(s) 100, 846
NciI CCSGG 1 cut(s) 281
NcoI CCATGG 1 cut(s) 615
NdeI CATATG 1 cut(s) 583
NdeII GATC 7 cut(s) 254, 468, 520, 550, 608, 877, 965
NlaIII CATG 7 cut(s) 231, 261, 323, 433, 593, 619, 740
NlaIV GGNNCC 3 cut(s) 112, 552, 839
NmeAIII GCCGAG 1 cut(s) 10
NsiI ATGCAT 1 cut(s) 583
NspI RCATGY 3 cut(s) 323, 593, 740
NspV TTCGAA 1 cut(s) 683
OliI CACNNNNGTG 1 cut(s) 778
PaeI GCATGC 2 cut(s) 323, 593
PinAI ACCGGT 1 cut(s) 155
PkrI GCNGC 3 cut(s) 454, 652, 815
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Psp6I CCWGG 2 cut(s) 267, 784
PspGI CCWGG 2 cut(s) 267, 784
PspN4I GGNNCC 3 cut(s) 112, 552, 839
PstNI CAGNNNCTG 1 cut(s) 653
PsuI RGATCY 2 cut(s) 550, 965
PvuII CAGCTG 1 cut(s) 650
RsaI GTAC 1 cut(s) 484
RsaNI GTAC 1 cut(s) 483
RseI CAYNNNNRTG 2 cut(s) 620, 778
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 3 cut(s) 453, 651, 814
Sau3AI GATC 7 cut(s) 254, 468, 520, 550, 608, 877, 965
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 3 cut(s) 269, 281, 786
SduI GDGCHC 2 cut(s) 750, 946
SfaNI GCATC 3 cut(s) 232, 322, 358
SfuI TTCGAA 1 cut(s) 683
SmiMI CAYNNNNRTG 2 cut(s) 620, 778
SmlI CTYRAG 1 cut(s) 933
SmoI CTYRAG 1 cut(s) 933
SphI GCATGC 2 cut(s) 323, 593
Sse9I AATT 5 cut(s) 16, 25, 55, 115, 383
SsiI CCGC 3 cut(s) 335, 450, 828
SspMI CTAG 2 cut(s) 501, 873
StyD4I CCNGG 3 cut(s) 267, 279, 784
StyI CCWWGG 2 cut(s) 615, 776
TaaI ACNGT 1 cut(s) 752
TaiI ACGT 1 cut(s) 484
TaqI TCGA 3 cut(s) 309, 471, 683
TasI AATT 5 cut(s) 16, 25, 55, 115, 383
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 1 cut(s) 755
TseI GCWGC 3 cut(s) 452, 650, 813
TspDTI ATGAA 4 cut(s) 92, 211, 396, 446
TspRI CASTG 1 cut(s) 755
XapI RAATTY 1 cut(s) 16
XceI RCATGY 3 cut(s) 323, 593, 740
XspI CTAG 2 cut(s) 501, 873
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.