Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000146

Physical Location & Seq

Genomic Coordinates Forward (+)

29106401 .. 29108647

Gene Structure 2247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00023580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTTCTCGAGGAAGTATCTGCTGATTCAACCCCCACATCGGCAACCAACTCTTCTCAACATAAAGGGCGATCATCATCCAATGATCATGGTCCTATTGCTCCGGAAAAATTGGACAGCACCAATTTTATTTCCTGGTCTAAACATGCGAAGTTGAACACCGGCCAAGGTAAACTTGGCTACCTCACCGGCAAGAAGAAAGCTCCATCGAAGAAGATGAAGAGGGGTATGAAATTTGGGTCGAAGAAGACAGTCTTGTTCAAGCATTGCTCTTCAACTCCATGCGCAAGGATGTCGGAGGAAATTATGAAAGTTTGGAGACAGCTAAAGAAATTTGGGATGCTATCAAAACTACTTTTTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

121

Amino Acids

13.46

Weight (kDa)

10.27

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000146)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica	Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis	pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis	RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata	RLG00000009017
rosa_multiflora	Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii	Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa	Rorug06G0120700
rosa_samantha	Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana	Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	286
AccIII	TCCGGA	1 cut(s)	103
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	2 cut(s)	233, 332
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	4 cut(s)	30, 157, 262, 276
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	2 cut(s)	203, 325
AluI	AGCT	2 cut(s)	203, 325
Alw26I	GTCTC	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	8
Aor13HI	TCCGGA	1 cut(s)	103
AoxI	GGCC	1 cut(s)	163
ApoI	RAATTY	2 cut(s)	233, 332
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	254
BccI	CCATC	1 cut(s)	214
BcgI	CGANNNNNNTGC	2 cut(s)	276, 310
BciT130I	CCWGG	1 cut(s)	136
BclI	TGATCA	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	92
BmeT110I	CYCGRG	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse118I	RCCGGY	2 cut(s)	161, 188
Bse3DI	GCAATG	1 cut(s)	265
Bse8I	GATNNNNATC	1 cut(s)	76
BseAI	TCCGGA	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	3 cut(s)	77, 297, 345
BseJI	GATNNNNATC	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	8
BsiSI	CCGG	3 cut(s)	104, 162, 189
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	165
BsoBI	CYCGRG	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	71, 85
BspANI	GGCC	1 cut(s)	165
BspEI	TCCGGA	1 cut(s)	103
BspQI	GCTCTTC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	265
BsrFI	RCCGGY	2 cut(s)	161, 188
BssAI	RCCGGY	2 cut(s)	161, 188
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	2 cut(s)	71, 85
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	3 cut(s)	58, 215, 277
BstF5I	GGATG	3 cut(s)	77, 297, 345
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	2 cut(s)	74, 88
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	2 cut(s)	71, 85
BstNI	CCWGG	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	3 cut(s)	77, 297, 345
CfoI	GCGC	1 cut(s)	287
Cfr10I	RCCGGY	2 cut(s)	161, 188
Cfr13I	GGNCC	1 cut(s)	92
CviAII	CATG	3 cut(s)	89, 146, 282
CviJI	RGCY	4 cut(s)	165, 180, 203, 325
CviKI_1	RGCY	4 cut(s)	165, 180, 203, 325
DpnI	GATC	2 cut(s)	73, 87
DpnII	GATC	2 cut(s)	71, 85
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	3 cut(s)	58, 215, 277
EarI	CTCTTC	3 cut(s)	58, 215, 277
Eco130I	CCWWGG	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	3 cut(s)	92, 149, 285
FaiI	YATR	6 cut(s)	63, 90, 147, 230, 283, 308
FalI	AAGNNNNNCTT	4 cut(s)	159, 191, 239, 271
FatI	CATG	3 cut(s)	88, 145, 281
FbaI	TGATCA	1 cut(s)	85
FokI	GGATG	3 cut(s)	64, 304, 352
FspI	TGCGCA	1 cut(s)	286
GlaI	GCGC	1 cut(s)	286
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	3 cut(s)	104, 162, 189
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	3 cut(s)	92, 149, 285
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	3 cut(s)	104, 162, 189
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	2 cut(s)	8, 104
Hpy8I	GTNNAC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	253
Hsp92II	CATG	3 cut(s)	92, 149, 285
HspAI	GCGC	1 cut(s)	285
Kpn2I	TCCGGA	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	71, 85
LguI	GCTCTTC	1 cut(s)	277
LmnI	GCTCC	2 cut(s)	106, 208
LpnPI	CCDG	5 cut(s)	117, 121, 148, 175, 202
LweI	GCATC	1 cut(s)	330
MalI	GATC	2 cut(s)	73, 87
MboI	GATC	2 cut(s)	71, 85
MboII	GAAGA	8 cut(s)	45, 208, 223, 226, 232, 256, 259, 264
MluCI	AATT	5 cut(s)	110, 124, 233, 303, 332
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	4 cut(s)	4, 194, 216, 292
MroI	TCCGGA	1 cut(s)	103
MspI	CCGG	3 cut(s)	104, 162, 189
MspR9I	CCNGG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	136
NdeII	GATC	2 cut(s)	71, 85
NlaIII	CATG	3 cut(s)	92, 149, 285
NsbI	TGCGCA	1 cut(s)	286
NspI	RCATGY	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	92
SapI	GCTCTTC	1 cut(s)	277
Sau3AI	GATC	2 cut(s)	71, 85
Sau96I	GGNCC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	136
SetI	ASST	4 cut(s)	172, 186, 205, 327
SfaNI	GCATC	1 cut(s)	330
Sfr274I	CTCGAG	1 cut(s)	8
SinI	GGWCC	1 cut(s)	92
SlaI	CTCGAG	1 cut(s)	8
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	5 cut(s)	110, 124, 233, 303, 332
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	253
TaqI	TCGA	3 cut(s)	9, 209, 242
TasI	AATT	5 cut(s)	110, 124, 233, 303, 332
TfiI	GAWTC	1 cut(s)	26
TspDTI	ATGAA	3 cut(s)	233, 245, 323
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	2 cut(s)	233, 332
XceI	RCATGY	1 cut(s)	149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XhoI	CTCGAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.