FvH4_3g43870

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000146
Physical Location & Seq
Reverse (-)
36570816 .. 36576381
5566 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43870.t1

Sequence Viewer

Length: 1542 bp
ATGGTGGGGAAACTTACGAAGCTTGAGGTTCTTCGTATGCAATACGTTCGATTAAAGGAATTATCGAGAGAAATAGGAAATTTGACCAATCTGAGGGTGTTGGATGTCACTGACGGATATATTTATAAGATTCCATCCAAACTGTTATCAAAGTTGCATAGTCTAGAAGAACTCTACCTGCGATGTCGATTTGTGGACTGGGGAAGCAAGGTGGACGGAGAAGGGGATGAAACCAATTCTGCCTTTGATGAGGTAACTGGCTTGTCAAAATTAAGAATTCTGCATGTTTGGATCTACAATGAAGAATGTATCCCCAAACTTGTTGAGCGCAATCCGAACTGGGTCGGGTTTTTTATGAAGAGTGAGGGGGAAGAGTTGCTGAGTTCTACGAATAATTACAAAGCTGATCACTCAATATTACTGTTCAGCCCAGCTGCCGCCTCATCTTCTTTTCCAGAAGTTGTTGCCGTTGCTGTGTCCAGGCCGGGATCCAAGTGTCGCCGTCGTCGTCTCTGCCCAGAAGTTGTCGTCGTGCCGGAGCCAAGGTTCAGTCGACGCTGCTCTTTCTGCCCAGAGGACGCCGCCGTGCCAAAACCCAGGTCTCGATGCCGCCGTGCCAAAGCCGAGGTCCCGACGCCGTTGTGCCTAGGTCTCGACGCCGTTGTGCCCAGGGGTTCTGGAGTTGAAAGTTCTCAGGAGAAAGATGTTCAGACAGTTGAAGTATCTGTCAAGAATTCTGAAAGTGGTTCATTTGGGGGTGCCAAACTCAATGGAACCAATTTTCGGAAATGGAAGAAAATCATGACGGCTCATCTTCGTGGGATGCATAAGATGGGGCATGTAACTTGGACAATTAAGGCCCCTAGTGAAAGTGATGTTGATGCTTACACTAAGTGGGAAGATGATGATGGTCTTGTGATGTCAGTCTTGTACAAGGCCATGAATGAGGACATAGTCGACCTGGTGGAACAATGTGATACAGCTCAGGCGATCTGGAAGACACTGGAAGATTTATATACTAATGAGTCTGATTTCATACAGGTTCATGAGTTGATGTGCACTGCTTCTTCAATGCAACATAATGGGCAGCCAGTGGCACAGTATTTCACCAAGCTAAGGAATATTTGGGCTGAAATTGATGCGAAACGTCCTTGCAAGATCAAGAACCAAGAGGATCTTGTTTGGCGAGAGCACCAGCACCACTCCTTTAGCAATCAAGTTCAGTTCCACTTCACAAGCAAGGACCACCACCAGGCTTTGGGAACCAACCTCGTCCCCCTTGCTCTTATTGCAAGGGTGACAATGCTCGGGGAGACAGGTCATTCAGTTGAGGTTACTGATGCATCAGCTTCACATACACCAGCCACTCCAGAGGTTCAGAGACCAGAAGATGATAGACAGGCACCACCAGATGATTCTGGTGCAATTGCTCCAGAGATTCAGGAACCAGAAGCTGAAAGTGTTCCTGCCCCTCCTGCCTCGCCTGCTGTTACTAATACCCCTGACTCATGTCTCCCCTGGTACAGAAGATCTTCCATTTGA

Protein Analysis

514

Amino Acids

57.53

Weight (kDa)

6.01

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 2 - 100 3.1e-08 Leucine-rich repeat region
Retrotran_gag_2 PF14223 273 - 379 6.5e-11 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
Acc36I ACCTGC 1 cut(s) 186
AccB1I GGYRCC 2 cut(s) 758, 1402
AccB7I CCANNNNNTGG 1 cut(s) 1258
AccI GTMKAC 2 cut(s) 553, 957
AciI CCGC 3 cut(s) 438, 582, 610
AclWI GGATC 4 cut(s) 299, 483, 496, 1182
AcsI RAATTY 3 cut(s) 79, 276, 733
AcyI GRCGYC 3 cut(s) 579, 635, 657
AdeI CACNNNGTG 1 cut(s) 894
AfaI GTAC 2 cut(s) 932, 1523
AfiI CCNNNNNNNGG 5 cut(s) 93, 783, 1116, 1252, 1258
AgsI TTSAA 3 cut(s) 686, 719, 1071
AjnI CCWGG 6 cut(s) 479, 596, 668, 960, 1251, 1517
AloI GAACNNNNNNTCC 2 cut(s) 530, 562
AluBI AGCT 7 cut(s) 22, 404, 434, 983, 1114, 1349, 1454
AluI AGCT 7 cut(s) 22, 404, 434, 983, 1114, 1349, 1454
Alw21I GWGCWC 2 cut(s) 1061, 1194
Alw26I GTCTC 6 cut(s) 515, 606, 656, 1307, 1375, 1517
Alw44I GTGCAC 1 cut(s) 1057
AlwI GGATC 4 cut(s) 299, 483, 496, 1182
AlwNI CAGNNNCTG 1 cut(s) 1454
Ama87I CYCGRG 1 cut(s) 1307
AoxI GGCC 3 cut(s) 482, 858, 936
ApaLI GTGCAC 1 cut(s) 1057
ApeKI GCWGC 3 cut(s) 434, 558, 1087
ApoI RAATTY 3 cut(s) 79, 276, 733
ArsI GACNNNNNNTTYG 4 cut(s) 584, 612, 616, 644
Asp700I GAANNNNTTC 2 cut(s) 1461, 1531
AspA2I CCTAGG 1 cut(s) 646
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 3 cut(s) 628, 859, 1243
AsuC2I CCSGG 1 cut(s) 486
AsuHPI GGTGA 2 cut(s) 1099, 1309
AvaI CYCGRG 1 cut(s) 1307
AvaII GGWCC 2 cut(s) 628, 1243
AvrII CCTAGG 1 cut(s) 646
BaeGI GKGCMC 2 cut(s) 669, 1061
BamHI GGATCC 1 cut(s) 488
BanI GGYRCC 2 cut(s) 758, 1402
BbsI GAAGAC 1 cut(s) 1004
Bbv12I GWGCWC 2 cut(s) 1061, 1194
BbvI GCAGC 3 cut(s) 421, 545, 1099
BccI CCATC 3 cut(s) 142, 826, 902
BceAI ACGGC 7 cut(s) 452, 486, 569, 597, 622, 644, 822
BcgI CGANNNNNNTGC 2 cut(s) 29, 63
BciT130I CCWGG 6 cut(s) 481, 598, 670, 962, 1253, 1519
BciVI GTATCC 1 cut(s) 320
BclI TGATCA 1 cut(s) 406
BcnI CCSGG 1 cut(s) 486
BcoDI GTCTC 6 cut(s) 515, 606, 656, 1307, 1375, 1517
BfaI CTAG 3 cut(s) 164, 647, 864
BfuAI ACCTGC 1 cut(s) 186
BfuI GTATCC 1 cut(s) 320
BglII AGATCT 1 cut(s) 1529
BisI GCNGC 6 cut(s) 435, 438, 559, 582, 610, 1088
BlnI CCTAGG 1 cut(s) 646
BlsI GCNGC 6 cut(s) 436, 439, 560, 583, 611, 1089
Bme1390I CCNGG 7 cut(s) 481, 486, 598, 670, 962, 1253, 1519
Bme18I GGWCC 2 cut(s) 628, 1243
BmeT110I CYCGRG 1 cut(s) 1307
BmgT120I GGNCC 3 cut(s) 628, 859, 1243
BmiI GGNNCC 9 cut(s) 490, 540, 630, 760, 775, 861, 1264, 1404, 1446
BmrFI CCNGG 7 cut(s) 481, 486, 598, 670, 962, 1253, 1519
BmrI ACTGGG 2 cut(s) 208, 349
BmsI GCATC 6 cut(s) 596, 813, 871, 1129, 1330, 1352
BmuI ACTGGG 2 cut(s) 208, 349
BoxI GACNNNNGTC 1 cut(s) 1509
BpiI GAAGAC 1 cut(s) 1004
BpmI CTGGAG 3 cut(s) 699, 1353, 1416
Bpu10I CCTNAGC 2 cut(s) 984, 1115
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 486
BsaHI GRCGYC 3 cut(s) 579, 635, 657
BsaI GGTCTC 3 cut(s) 606, 656, 1375
BsaJI CCNNGG 7 cut(s) 542, 596, 624, 646, 668, 669, 1517
BsaXI ACNNNNNCTCC 2 cut(s) 530, 560
Bsc4I CCNNNNNNNGG 5 cut(s) 93, 783, 1116, 1252, 1258
Bse1I ACTGG 5 cut(s) 203, 262, 344, 1008, 1091
BseBI CCWGG 6 cut(s) 481, 598, 670, 962, 1253, 1519
BseDI CCNNGG 7 cut(s) 542, 596, 624, 646, 668, 669, 1517
BseGI GGATG 4 cut(s) 109, 134, 232, 828
BseLI CCNNNNNNNGG 5 cut(s) 93, 783, 1116, 1252, 1258
BseMII CTCAG 4 cut(s) 83, 371, 707, 998
BseNI ACTGG 5 cut(s) 203, 262, 344, 1008, 1091
BseSI GKGCMC 2 cut(s) 669, 1061
BseXI GCAGC 3 cut(s) 421, 545, 1099
BseYI CCCAGC 1 cut(s) 430
BshFI GGCC 3 cut(s) 484, 860, 938
BshNI GGYRCC 2 cut(s) 758, 1402
BsiHKAI GWGCWC 2 cut(s) 1061, 1194
BsiHKCI CYCGRG 1 cut(s) 1307
BsiSI CCGG 2 cut(s) 485, 536
BslFI GGGAC 2 cut(s) 614, 1259
BslI CCNNNNNNNGG 5 cut(s) 93, 783, 1116, 1252, 1258
BsmAI GTCTC 6 cut(s) 515, 606, 656, 1307, 1375, 1517
BsmBI CGTCTC 1 cut(s) 515
BsmFI GGGAC 2 cut(s) 614, 1259
BsnI GGCC 3 cut(s) 484, 860, 938
Bso31I GGTCTC 3 cut(s) 606, 656, 1375
BsoBI CYCGRG 1 cut(s) 1307
Bsp1286I GDGCHC 3 cut(s) 669, 1061, 1194
Bsp1407I TGTACA 1 cut(s) 930
Bsp143I GATC 7 cut(s) 291, 406, 488, 990, 1158, 1174, 1529
BspACI CCGC 3 cut(s) 438, 582, 610
BspANI GGCC 3 cut(s) 484, 860, 938
BspCNI CTCAG 4 cut(s) 84, 372, 706, 997
BspHI TCATGA 2 cut(s) 801, 1045
BspLI GGNNCC 9 cut(s) 490, 540, 630, 760, 775, 861, 1264, 1404, 1446
BspMI ACCTGC 1 cut(s) 186
BspPI GGATC 4 cut(s) 299, 483, 496, 1182
BspT107I GGYRCC 2 cut(s) 758, 1402
BspTNI GGTCTC 3 cut(s) 606, 656, 1375
BsrGI TGTACA 1 cut(s) 930
BsrI ACTGG 5 cut(s) 203, 262, 344, 1008, 1091
BssECI CCNNGG 7 cut(s) 542, 596, 624, 646, 668, 669, 1517
BssMI GATC 7 cut(s) 291, 406, 488, 990, 1158, 1174, 1529
BssNI GRCGYC 3 cut(s) 579, 635, 657
BssT1I CCWWGG 2 cut(s) 542, 646
Bst2UI CCWGG 6 cut(s) 481, 598, 670, 962, 1253, 1519
Bst4CI ACNGT 4 cut(s) 144, 423, 715, 1101
Bst6I CTCTTC 2 cut(s) 353, 366
BstACI GRCGYC 3 cut(s) 579, 635, 657
BstAUI TGTACA 1 cut(s) 930
BstC8I GCNNGC 1 cut(s) 1485
BstDEI CTNAG 6 cut(s) 92, 380, 693, 891, 984, 1115
BstF5I GGATG 4 cut(s) 109, 134, 232, 828
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 7 cut(s) 294, 409, 491, 993, 1161, 1177, 1532
BstMAI GTCTC 6 cut(s) 515, 606, 656, 1307, 1375, 1517
BstMBI GATC 7 cut(s) 291, 406, 488, 990, 1158, 1174, 1529
BstMWI GCNNNNNNNGC 4 cut(s) 567, 1289, 1475, 1484
BstNI CCWGG 6 cut(s) 481, 598, 670, 962, 1253, 1519
BstNSI RCATGY 2 cut(s) 287, 842
BstPAI GACNNNNGTC 1 cut(s) 1509
BstSCI CCNGG 7 cut(s) 479, 484, 596, 668, 960, 1251, 1517
BstSLI GKGCMC 2 cut(s) 669, 1061
BstV1I GCAGC 3 cut(s) 421, 545, 1099
BstV2I GAAGAC 1 cut(s) 1004
BstX2I RGATCY 4 cut(s) 291, 488, 1174, 1529
BstYI RGATCY 4 cut(s) 291, 488, 1174, 1529
BsuI GTATCC 1 cut(s) 320
BsuRI GGCC 3 cut(s) 484, 860, 938
BtgZI GCGATG 1 cut(s) 196
BtsCI GGATG 4 cut(s) 109, 134, 232, 828
BtsI GCAGTG 1 cut(s) 1059
BtsIMutI CAGTG 4 cut(s) 108, 1001, 1059, 1098
BveI ACCTGC 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 1485
CaiI CAGNNNCTG 1 cut(s) 1454
CciI TCATGA 2 cut(s) 801, 1045
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 3 cut(s) 628, 859, 1243
CseI GACGC 4 cut(s) 564, 587, 643, 665
CsiI ACCWGGT 1 cut(s) 960
Csp6I GTAC 2 cut(s) 931, 1522
CviAII CATG 6 cut(s) 284, 802, 839, 940, 1046, 1509
CviQI GTAC 2 cut(s) 931, 1522
DdeI CTNAG 6 cut(s) 92, 380, 693, 891, 984, 1115
DpnI GATC 7 cut(s) 293, 408, 490, 992, 1160, 1176, 1531
DpnII GATC 7 cut(s) 291, 406, 488, 990, 1158, 1174, 1529
DraIII CACNNNGTG 1 cut(s) 894
Eam1104I CTCTTC 2 cut(s) 353, 366
EarI CTCTTC 2 cut(s) 353, 366
Eco130I CCWWGG 2 cut(s) 542, 646
Eco31I GGTCTC 3 cut(s) 606, 656, 1375
Eco47I GGWCC 2 cut(s) 628, 1243
Eco88I CYCGRG 1 cut(s) 1307
EcoO109I RGGNCCY 2 cut(s) 628, 859
EcoRI GAATTC 2 cut(s) 276, 733
EcoRII CCWGG 6 cut(s) 479, 596, 668, 960, 1251, 1517
EcoT14I CCWWGG 2 cut(s) 542, 646
EcoT22I ATGCAT 2 cut(s) 828, 1345
ErhI CCWWGG 2 cut(s) 542, 646
Esp3I CGTCTC 1 cut(s) 515
FaeI CATG 6 cut(s) 287, 805, 842, 943, 1049, 1512
FalI AAGNNNNNCTT 2 cut(s) 1161, 1193
FaqI GGGAC 2 cut(s) 614, 1259
FatI CATG 6 cut(s) 283, 801, 838, 939, 1045, 1508
FbaI TGATCA 1 cut(s) 406
FblI GTMKAC 2 cut(s) 553, 957
Fnu4HI GCNGC 6 cut(s) 435, 438, 559, 582, 610, 1088
FokI GGATG 4 cut(s) 116, 121, 239, 835
Fsp4HI GCNGC 6 cut(s) 435, 438, 559, 582, 610, 1088
FspBI CTAG 3 cut(s) 164, 647, 864
GlaI GCGC 1 cut(s) 329
GluI GCNGC 6 cut(s) 435, 438, 559, 582, 610, 1088
GsaI CCCAGC 1 cut(s) 434
GsuI CTGGAG 3 cut(s) 699, 1353, 1416
HaeIII GGCC 3 cut(s) 484, 860, 938
HapII CCGG 2 cut(s) 485, 536
HgaI GACGC 4 cut(s) 564, 587, 643, 665
HhaI GCGC 1 cut(s) 330
Hin1I GRCGYC 3 cut(s) 579, 635, 657
Hin1II CATG 6 cut(s) 287, 805, 842, 943, 1049, 1512
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HincII GTYRAC 2 cut(s) 554, 958
HindII GTYRAC 2 cut(s) 554, 958
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 5 cut(s) 130, 1025, 1415, 1438, 1505
HpaII CCGG 2 cut(s) 485, 536
HphI GGTGA 2 cut(s) 1099, 1309
Hpy166II GTNNAC 5 cut(s) 196, 214, 554, 958, 1059
Hpy188I TCNGA 7 cut(s) 93, 336, 711, 739, 786, 1030, 1380
Hpy8I GTNNAC 5 cut(s) 196, 214, 554, 958, 1059
Hpy99I CGWCG 6 cut(s) 507, 510, 533, 558, 637, 659
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 4 cut(s) 144, 423, 715, 1101
HpyCH4IV ACGT 2 cut(s) 45, 1147
HpyF10VI GCNNNNNNNGC 4 cut(s) 567, 1289, 1475, 1484
HpyF3I CTNAG 6 cut(s) 92, 380, 693, 891, 984, 1115
HpySE526I ACGT 2 cut(s) 45, 1147
Hsp92I GRCGYC 3 cut(s) 579, 635, 657
Hsp92II CATG 6 cut(s) 287, 805, 842, 943, 1049, 1512
HspAI GCGC 1 cut(s) 328
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 7 cut(s) 291, 406, 488, 990, 1158, 1174, 1529
LmnI GCTCC 2 cut(s) 538, 1435
Lsp1109I GCAGC 3 cut(s) 421, 545, 1099
LweI GCATC 6 cut(s) 596, 813, 871, 1129, 1330, 1352
MabI ACCWGGT 1 cut(s) 960
MaeI CTAG 3 cut(s) 164, 647, 864
MaeII ACGT 2 cut(s) 45, 1147
MaeIII GTNAC 6 cut(s) 106, 253, 841, 1297, 1333, 1489
MalI GATC 7 cut(s) 293, 408, 490, 992, 1160, 1176, 1531
MboI GATC 7 cut(s) 291, 406, 488, 990, 1158, 1174, 1529
MfeI CAATTG 1 cut(s) 1425
MflI RGATCY 4 cut(s) 291, 488, 1174, 1529
MhlI GDGCHC 3 cut(s) 669, 1061, 1194
MlyI GAGTC 2 cut(s) 1034, 1499
MmeI TCCRAC 1 cut(s) 81
Mph1103I ATGCAT 2 cut(s) 828, 1345
MroXI GAANNNNTTC 2 cut(s) 1461, 1531
MseI TTAA 3 cut(s) 53, 272, 855
MslI CAYNNNNRTG 1 cut(s) 816
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 2 cut(s) 485, 536
MspR9I CCNGG 7 cut(s) 481, 486, 598, 670, 962, 1253, 1519
MunI CAATTG 1 cut(s) 1425
MvaI CCWGG 6 cut(s) 481, 598, 670, 962, 1253, 1519
MwoI GCNNNNNNNGC 4 cut(s) 567, 1289, 1475, 1484
NciI CCSGG 1 cut(s) 486
NdeII GATC 7 cut(s) 291, 406, 488, 990, 1158, 1174, 1529
NlaIII CATG 6 cut(s) 287, 805, 842, 943, 1049, 1512
NlaIV GGNNCC 9 cut(s) 490, 540, 630, 760, 775, 861, 1264, 1404, 1446
NmeAIII GCCGAG 1 cut(s) 649
NmuCI GTSAC 2 cut(s) 106, 1297
NsiI ATGCAT 2 cut(s) 828, 1345
NspI RCATGY 2 cut(s) 287, 842
PagI TCATGA 2 cut(s) 801, 1045
PasI CCCWGGG 1 cut(s) 669
PcsI WCGNNNNNNNCGW 2 cut(s) 505, 610
PdmI GAANNNNTTC 2 cut(s) 1461, 1531
PfeI GAWTC 3 cut(s) 130, 1415, 1438
PflFI GACNNNGTC 1 cut(s) 953
PflMI CCANNNNNTGG 1 cut(s) 1258
PkrI GCNGC 6 cut(s) 436, 439, 560, 583, 611, 1089
PleI GAGTC 2 cut(s) 1033, 1499
PpsI GAGTC 2 cut(s) 1033, 1499
PpuMI RGGWCCY 1 cut(s) 628
PshAI GACNNNNGTC 1 cut(s) 1509
PsiI TTATAA 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 628
Psp6I CCWGG 6 cut(s) 479, 596, 668, 960, 1251, 1517
PspFI CCCAGC 1 cut(s) 430
PspGI CCWGG 6 cut(s) 479, 596, 668, 960, 1251, 1517
PspN4I GGNNCC 9 cut(s) 490, 540, 630, 760, 775, 861, 1264, 1404, 1446
PspPI GGNCC 3 cut(s) 628, 859, 1243
PspPPI RGGWCCY 1 cut(s) 628
PstNI CAGNNNCTG 1 cut(s) 1454
PsuI RGATCY 4 cut(s) 291, 488, 1174, 1529
PsyI GACNNNGTC 1 cut(s) 953
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 2 cut(s) 932, 1523
RsaNI GTAC 2 cut(s) 931, 1522
RseI CAYNNNNRTG 1 cut(s) 816
SalI GTCGAC 2 cut(s) 552, 956
SaqAI TTAA 3 cut(s) 53, 272, 855
SatI GCNGC 6 cut(s) 435, 438, 559, 582, 610, 1088
Sau3AI GATC 7 cut(s) 291, 406, 488, 990, 1158, 1174, 1529
Sau96I GGNCC 3 cut(s) 628, 859, 1243
SchI GAGTC 2 cut(s) 1034, 1499
ScrFI CCNGG 7 cut(s) 481, 486, 598, 670, 962, 1253, 1519
SduI GDGCHC 3 cut(s) 669, 1061, 1194
SexAI ACCWGGT 1 cut(s) 960
SfaNI GCATC 6 cut(s) 596, 813, 871, 1129, 1330, 1352
SinI GGWCC 2 cut(s) 628, 1243
SmiMI CAYNNNNRTG 1 cut(s) 816
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SsiI CCGC 3 cut(s) 438, 582, 610
SspI AATATT 2 cut(s) 417, 1123
SspMI CTAG 3 cut(s) 164, 647, 864
StyD4I CCNGG 7 cut(s) 479, 484, 596, 668, 960, 1251, 1517
StyI CCWWGG 2 cut(s) 542, 646
TaaI ACNGT 4 cut(s) 144, 423, 715, 1101
TaiI ACGT 2 cut(s) 48, 1150
TaqI TCGA 7 cut(s) 49, 65, 187, 553, 604, 654, 957
TatI WGTACW 1 cut(s) 930
TauI GCSGC 3 cut(s) 440, 584, 612
TfiI GAWTC 3 cut(s) 130, 1415, 1438
Tru1I TTAA 3 cut(s) 53, 272, 855
Tru9I TTAA 3 cut(s) 53, 272, 855
TscAI CASTG 4 cut(s) 115, 1008, 1066, 1098
TseFI GTSAC 2 cut(s) 106, 1297
TseI GCWGC 3 cut(s) 434, 558, 1087
Tsp45I GTSAC 2 cut(s) 106, 1297
TspDTI ATGAA 7 cut(s) 243, 315, 371, 738, 956, 1024, 1034
TspGWI ACGGA 2 cut(s) 129, 231
TspRI CASTG 4 cut(s) 115, 1008, 1066, 1098
Tth111I GACNNNGTC 1 cut(s) 953
Van91I CCANNNNNTGG 1 cut(s) 1258
VneI GTGCAC 1 cut(s) 1057
VpaK11BI GGWCC 2 cut(s) 628, 1243
XapI RAATTY 3 cut(s) 79, 276, 733
XbaI TCTAGA 1 cut(s) 163
XceI RCATGY 2 cut(s) 287, 842
XmaJI CCTAGG 1 cut(s) 646
XmiI GTMKAC 2 cut(s) 553, 957
XmnI GAANNNNTTC 2 cut(s) 1461, 1531
XspI CTAG 3 cut(s) 164, 647, 864
Zsp2I ATGCAT 2 cut(s) 828, 1345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.