FvH4_4g33444
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000146
Physical Location & Seq
Reverse (-)
31665092 .. 31666630
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g33444.t1

Sequence Viewer

Length: 540 bp
ATGGTTCTCGATAAAGTACAGATCAGTTCATCTCAGACATCAGCAATCAAGTCTGAATCTTCTTCTCAACATAAAGGGCGATCGTCATCTAATGATCATGGCCCTATTGTTCCAGAAAAATTGGATAGCACCAATTTTATTTCTTGGTCTAAACATGCCAAGTTGAATATCACTGGCCGAGGTAAACTTGGTTATCTCACTGGCAAGAACAAAGCACCATCCGAAGAAGATGATGAAGAGGGTTACGAAGTTTGGGTTGAAGAAGATAGTCTCGTTCAAGCATGGCTTCTCAGTTCCATGCACAAGGAGGTCAGAGAAAATTATGAAGGTTTGGAGACAGCTAAAGAAATTTGGGATGCTGTTAAAACTACTTTTTCAGTAGCCCAAGATGATACACGAAACTATGAGCTACAAATAGCTTCGGTTTCCACCAAACAAAATGGAGCTCCTCTTCATGGCTACTACAGCAATATGAAGAAAATATGGCAAGAGCTTGACATATTGGATCCTCTCAGACTCAAGGATGAAGATTCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.17

Weight (kDa)

5.06

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 33 - 73 6.4e-07 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 62 - 168 4.6e-08 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 500, 513
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 348
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 455
AgsI TTSAA 3 cut(s) 166, 260, 278
AluBI AGCT 6 cut(s) 341, 409, 419, 446, 493, 537
AluI AGCT 6 cut(s) 341, 409, 419, 446, 493, 537
Alw21I GWGCWC 1 cut(s) 448
Alw26I GTCTC 2 cut(s) 275, 329
AlwI GGATC 2 cut(s) 500, 513
AoxI GGCC 2 cut(s) 100, 175
ApoI RAATTY 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 101
BamHI GGATCC 1 cut(s) 505
BanII GRGCYC 1 cut(s) 448
Bbv12I GWGCWC 1 cut(s) 448
BccI CCATC 1 cut(s) 226
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 275, 329
BfaI CTAG 2 cut(s) 534, 538
BfmI CTRYAG 1 cut(s) 463
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 507
BmsI GCATC 1 cut(s) 346
BpuEI CTTGAG 1 cut(s) 503
BsaBI GATNNNNATC 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 178
Bsc4I CCNNNNNNNGG 1 cut(s) 455
Bse1I ACTGG 2 cut(s) 178, 205
Bse8I GATNNNNATC 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 3 cut(s) 218, 361, 529
BseJI GATNNNNATC 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 455
BseMII CTCAG 3 cut(s) 47, 304, 526
BseNI ACTGG 2 cut(s) 178, 205
BseRI GAGGAG 1 cut(s) 438
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 2 cut(s) 102, 177
BsiEI CGRYCG 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 448
BslI CCNNNNNNNGG 1 cut(s) 455
BsmAI GTCTC 2 cut(s) 275, 329
BsnI GGCC 2 cut(s) 102, 177
Bsp1286I GDGCHC 1 cut(s) 448
Bsp143I GATC 4 cut(s) 21, 80, 94, 505
BspANI GGCC 2 cut(s) 102, 177
BspCNI CTCAG 3 cut(s) 46, 303, 525
BspLI GGNNCC 1 cut(s) 507
BspPI GGATC 2 cut(s) 500, 513
BsrI ACTGG 2 cut(s) 178, 205
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 4 cut(s) 21, 80, 94, 505
Bst6I CTCTTC 2 cut(s) 231, 456
BstDEI CTNAG 3 cut(s) 33, 290, 512
BstF5I GGATG 3 cut(s) 218, 361, 529
BstKTI GATC 4 cut(s) 24, 83, 97, 508
BstMAI GTCTC 2 cut(s) 275, 329
BstMBI GATC 4 cut(s) 21, 80, 94, 505
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 465
BstNSI RCATGY 1 cut(s) 158
BstSFI CTRYAG 1 cut(s) 463
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
BsuRI GGCC 2 cut(s) 102, 177
BtsCI GGATG 3 cut(s) 218, 361, 529
BtsIMutI CAGTG 2 cut(s) 171, 198
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 17
CviAII CATG 5 cut(s) 98, 155, 282, 298, 455
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 3 cut(s) 33, 290, 512
DpnI GATC 4 cut(s) 23, 82, 96, 507
DpnII GATC 4 cut(s) 21, 80, 94, 505
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 231, 456
EarI CTCTTC 2 cut(s) 231, 456
Ecl136II GAGCTC 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 448
Eco53kI GAGCTC 1 cut(s) 446
EcoICRI GAGCTC 1 cut(s) 446
EcoT38I GRGCYC 1 cut(s) 448
FaeI CATG 5 cut(s) 101, 158, 285, 301, 458
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FatI CATG 5 cut(s) 97, 154, 281, 297, 454
FbaI TGATCA 1 cut(s) 94
FokI GGATG 3 cut(s) 205, 368, 536
FriOI GRGCYC 1 cut(s) 448
FspBI CTAG 2 cut(s) 534, 538
HaeIII GGCC 2 cut(s) 102, 177
Hin1II CATG 5 cut(s) 101, 158, 285, 301, 458
HinfI GANTC 3 cut(s) 56, 516, 530
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 5 cut(s) 36, 55, 223, 314, 515
Hpy188III TCNNGA 2 cut(s) 8, 113
Hpy8I GTNNAC 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 320
HpyCH4V TGCA 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 465
HpyF3I CTNAG 3 cut(s) 33, 290, 512
Hsp92II CATG 5 cut(s) 101, 158, 285, 301, 458
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 4 cut(s) 21, 80, 94, 505
LmnI GCTCC 2 cut(s) 443, 451
LpnPI CCDG 3 cut(s) 126, 159, 186
LweI GCATC 1 cut(s) 346
MaeI CTAG 2 cut(s) 534, 538
MaeIII GTNAC 1 cut(s) 242
MalI GATC 4 cut(s) 23, 82, 96, 507
MboI GATC 4 cut(s) 21, 80, 94, 505
MflI RGATCY 1 cut(s) 505
MhlI GDGCHC 1 cut(s) 448
MluCI AATT 4 cut(s) 119, 133, 319, 348
MlyI GAGTC 1 cut(s) 510
MnlI CCTC 5 cut(s) 173, 232, 301, 459, 519
MseI TTAA 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 465
NdeII GATC 4 cut(s) 21, 80, 94, 505
NlaIII CATG 5 cut(s) 101, 158, 285, 301, 458
NlaIV GGNNCC 1 cut(s) 507
NmeAIII GCCGAG 1 cut(s) 203
NspI RCATGY 1 cut(s) 158
PfeI GAWTC 2 cut(s) 56, 530
Ple19I CGATCG 1 cut(s) 83
PleI GAGTC 1 cut(s) 510
PpsI GAGTC 1 cut(s) 510
Psp124BI GAGCTC 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 507
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 505
PvuI CGATCG 1 cut(s) 83
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SacI GAGCTC 1 cut(s) 448
SaqAI TTAA 1 cut(s) 363
Sau3AI GATC 4 cut(s) 21, 80, 94, 505
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 1 cut(s) 510
SduI GDGCHC 1 cut(s) 448
SetI ASST 9 cut(s) 184, 312, 331, 343, 411, 421, 448, 495, 539
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 1 cut(s) 463
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 4 cut(s) 119, 133, 319, 348
SspMI CTAG 2 cut(s) 534, 538
SstI GAGCTC 1 cut(s) 448
TaqI TCGA 1 cut(s) 9
TasI AATT 4 cut(s) 119, 133, 319, 348
TatI WGTACW 1 cut(s) 16
TfiI GAWTC 2 cut(s) 56, 530
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 2 cut(s) 178, 205
TspDTI ATGAA 6 cut(s) 18, 249, 339, 443, 488, 540
TspRI CASTG 2 cut(s) 178, 205
XapI RAATTY 1 cut(s) 348
XceI RCATGY 1 cut(s) 158
XspI CTAG 2 cut(s) 534, 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.