Rw4G002690
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000146
Physical Location & Seq
Forward (+)
5324445 .. 5325098
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G002690.1

Sequence Viewer

Length: 540 bp
ATGGGGCATGTGACTGGAACAATCAAGGCTCCTAGTGAAGATGATGTGGAAGCCTATGCTAAGTGGGAAGACGATGATGAGTTTGTAATGTCAATTCTGTTTAGAGCCATGATTGAGGATGTGCTACAGATGGTGGAGAAGTGTGAAACCGCTGAGGCAATATTGAAGACACTGGGAGATCTCTATACAAATGAGTCTGATTTTATACAGGTTCATGAACTGATGTGCAAAGCTGTAGGAATGCAACAGAATGGGCAACCAGTGTCAGTGTTTTTTACCAAGCTGAAGACTGTATGGGCTGAAATTGATCAGAAGCGACCTTGCAAGATCAAGAATCAGGAGAGTATTGCATGGTACCAGAAAGAGAAGGAGCTTGAGCGGGTACATGCATTCTTGAGAGAACTTGATGCGAAACATAATAGTGCCAAGGGAGAGTTGCTCAGAATGCCAGACCCTGAATCTCAGCAGGAAAGTCTCAAACAGGTACAAGTTGAAGTTTCTAGCCTAACCATTCAAGCACCAGCACCTTTACTCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

179

Amino Acids

20.44

Weight (kDa)

4.85

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 354
AccB1I GGYRCC 1 cut(s) 354
AccBSI CCGCTC 1 cut(s) 379
AciI CCGC 2 cut(s) 150, 379
AcuI CTGAAG 1 cut(s) 305
AfaI GTAC 3 cut(s) 356, 384, 486
AgsI TTSAA 3 cut(s) 166, 494, 515
AluBI AGCT 3 cut(s) 233, 283, 373
AluI AGCT 3 cut(s) 233, 283, 373
Alw26I GTCTC 1 cut(s) 479
AlwNI CAGNNNCTG 1 cut(s) 455
Asp718I GGTACC 1 cut(s) 354
BanI GGYRCC 1 cut(s) 354
BbsI GAAGAC 3 cut(s) 75, 173, 293
BbvCI CCTCAGC 1 cut(s) 153
BccI CCATC 1 cut(s) 124
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 479
BfaI CTAG 2 cut(s) 33, 501
BfmI CTRYAG 2 cut(s) 125, 234
BglII AGATCT 1 cut(s) 178
BmiI GGNNCC 2 cut(s) 30, 356
BmrI ACTGGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 397
BmuI ACTGGG 1 cut(s) 182
BpiI GAAGAC 3 cut(s) 75, 173, 293
BplI GAGNNNNNCTC 2 cut(s) 423, 455
BpmI CTGGAG 1 cut(s) 518
Bpu10I CCTNAGC 1 cut(s) 153
BpuEI CTTGAG 2 cut(s) 395, 415
BsaJI CCNNGG 1 cut(s) 426
BsaXI ACNNNNNCTCC 1 cut(s) 516
Bse1I ACTGG 4 cut(s) 19, 177, 260, 535
BseDI CCNNGG 1 cut(s) 426
BseGI GGATG 1 cut(s) 124
BseMII CTCAG 3 cut(s) 144, 454, 476
BseNI ACTGG 4 cut(s) 19, 177, 260, 535
BshNI GGYRCC 1 cut(s) 354
BsmAI GTCTC 1 cut(s) 479
BsmI GAATGC 3 cut(s) 246, 389, 450
Bsp143I GATC 3 cut(s) 178, 307, 327
BspACI CCGC 2 cut(s) 150, 379
BspCNI CTCAG 3 cut(s) 145, 453, 475
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 30, 356
BspT107I GGYRCC 1 cut(s) 354
BsrBI CCGCTC 1 cut(s) 379
BsrI ACTGG 4 cut(s) 19, 177, 260, 535
BssECI CCNNGG 1 cut(s) 426
BssMI GATC 3 cut(s) 178, 307, 327
BssT1I CCWWGG 1 cut(s) 426
Bst4CI ACNGT 1 cut(s) 292
BstDEI CTNAG 4 cut(s) 60, 153, 440, 462
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 3 cut(s) 181, 310, 330
BstMAI GTCTC 1 cut(s) 479
BstMBI GATC 3 cut(s) 178, 307, 327
BstMWI GCNNNNNNNGC 1 cut(s) 445
BstNSI RCATGY 2 cut(s) 11, 389
BstSFI CTRYAG 2 cut(s) 125, 234
BstV2I GAAGAC 3 cut(s) 75, 173, 293
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BtsCI GGATG 1 cut(s) 124
BtsIMutI CAGTG 3 cut(s) 170, 267, 273
CaiI CAGNNNCTG 1 cut(s) 455
CciI TCATGA 1 cut(s) 214
Csp6I GTAC 3 cut(s) 355, 383, 485
CviAII CATG 5 cut(s) 8, 109, 215, 351, 386
CviJI RGCY 8 cut(s) 29, 53, 107, 233, 283, 299, 373, 504
CviKI_1 RGCY 8 cut(s) 29, 53, 107, 233, 283, 299, 373, 504
CviQI GTAC 3 cut(s) 355, 383, 485
DdeI CTNAG 4 cut(s) 60, 153, 440, 462
DpnI GATC 3 cut(s) 180, 309, 329
DpnII GATC 3 cut(s) 178, 307, 327
Eco130I CCWWGG 1 cut(s) 426
Eco57I CTGAAG 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 426
EcoT22I ATGCAT 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 5 cut(s) 11, 112, 218, 354, 389
FatI CATG 5 cut(s) 7, 108, 214, 350, 385
FauI CCCGC 1 cut(s) 372
FbaI TGATCA 1 cut(s) 307
FokI GGATG 1 cut(s) 131
FspBI CTAG 2 cut(s) 33, 501
GsuI CTGGAG 1 cut(s) 518
Hin1II CATG 5 cut(s) 11, 112, 218, 354, 389
HinfI GANTC 3 cut(s) 194, 334, 458
Hpy188I TCNGA 3 cut(s) 199, 312, 443
Hpy188III TCNNGA 4 cut(s) 215, 331, 338, 394
HpyAV CCTTC 1 cut(s) 361
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 5 cut(s) 228, 244, 324, 350, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 445
HpyF3I CTNAG 4 cut(s) 60, 153, 440, 462
Hsp92II CATG 5 cut(s) 11, 112, 218, 354, 389
KpnI GGTACC 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 3 cut(s) 178, 307, 327
LmnI GCTCC 2 cut(s) 34, 370
LweI GCATC 1 cut(s) 397
MaeI CTAG 2 cut(s) 33, 501
MaeIII GTNAC 1 cut(s) 10
MalI GATC 3 cut(s) 180, 309, 329
MbiI CCGCTC 1 cut(s) 379
MboI GATC 3 cut(s) 178, 307, 327
MboII GAAGA 4 cut(s) 50, 80, 178, 298
MflI RGATCY 1 cut(s) 178
MluCI AATT 2 cut(s) 93, 303
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 2 cut(s) 109, 148
Mph1103I ATGCAT 1 cut(s) 391
MslI CAYNNNNRTG 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 152
Mva1269I GAATGC 3 cut(s) 246, 389, 450
MwoI GCNNNNNNNGC 1 cut(s) 445
NdeII GATC 3 cut(s) 178, 307, 327
NlaIII CATG 5 cut(s) 11, 112, 218, 354, 389
NlaIV GGNNCC 2 cut(s) 30, 356
NmuCI GTSAC 1 cut(s) 10
NsiI ATGCAT 1 cut(s) 391
NspI RCATGY 2 cut(s) 11, 389
PagI TCATGA 1 cut(s) 214
PctI GAATGC 3 cut(s) 246, 389, 450
PfeI GAWTC 2 cut(s) 334, 458
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 30, 356
PstNI CAGNNNCTG 1 cut(s) 455
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 3 cut(s) 356, 384, 486
RsaNI GTAC 3 cut(s) 355, 383, 485
RseI CAYNNNNRTG 1 cut(s) 420
Sau3AI GATC 3 cut(s) 178, 307, 327
SchI GAGTC 1 cut(s) 203
SetI ASST 7 cut(s) 213, 235, 285, 322, 375, 486, 529
SfaNI GCATC 1 cut(s) 397
SfcI CTRYAG 2 cut(s) 125, 234
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 2 cut(s) 374, 394
SmoI CTYRAG 2 cut(s) 374, 394
Sse9I AATT 2 cut(s) 93, 303
SsiI CCGC 2 cut(s) 150, 379
SspI AATATT 1 cut(s) 162
SspMI CTAG 2 cut(s) 33, 501
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 1 cut(s) 292
TasI AATT 2 cut(s) 93, 303
TfiI GAWTC 2 cut(s) 334, 458
TscAI CASTG 3 cut(s) 177, 267, 273
TseFI GTSAC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 2 cut(s) 203, 231
TspRI CASTG 3 cut(s) 177, 267, 273
XceI RCATGY 2 cut(s) 11, 389
XspI CTAG 2 cut(s) 33, 501
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.