Rh3BG173100
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000146
Physical Location & Seq
Reverse (-)
14851782 .. 14852258
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG173100.1

Sequence Viewer

Length: 477 bp
ATGGTTCTCGAGGAAGTATCTTCTGCTTCAACCCCCAAATCAGCAACTAACTCTTCTCAACATAAAGGGCGATCATCATCCAATGATCATGGTCCTATTGTTCCAGAAAAATTGGACAGCACCAATTTTATTTCCTGGTCTAAACATGCAAAGTTGAACATCACCGGCCGAGGTAAACTTGGCTACCTCACCGGCAAGAAGAAAGCACCATCTGAAGAAGATGAAGAGGGCTATGAAATTTGGGTCGAAGAAGACAGTCTTGTTCAAGCATGGCTCTTCAACTCCATGCACACGGATGTCAGAGGAAATTATGAAAGTTTGGAGACGGCTAAAGAAATTTGGGATGCTGTCAAAACTACTTTTTCAGTAGCTCAGGATGATACAAGAAACTATGAGCTACAAATTGCTTCTGTTTCCACTAAACAGAATGGGGCTCCTCTTCATGACTATTACTGCAATATGAAGAAAATATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.77

Weight (kDa)

5.54

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 30 - 70 1.6e-07 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 58 - 129 4e-07 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 2 cut(s) 237, 336
AcuI CTGAAG 1 cut(s) 234
AgsI TTSAA 4 cut(s) 30, 157, 266, 280
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 2 cut(s) 371, 397
AluI AGCT 2 cut(s) 371, 397
Alw26I GTCTC 1 cut(s) 317
Ama87I CYCGRG 1 cut(s) 8
AoxI GGCC 1 cut(s) 166
ApoI RAATTY 2 cut(s) 237, 336
AspS9I GGNCC 1 cut(s) 92
AsuHPI GGTGA 2 cut(s) 154, 181
AvaI CYCGRG 1 cut(s) 8
AvaII GGWCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 258
BccI CCATC 1 cut(s) 217
BceAI ACGGC 1 cut(s) 342
BciT130I CCWGG 1 cut(s) 136
BclI TGATCA 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 317
Bme1390I CCNGG 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 92
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 435
BmrFI CCNGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 334
BpiI GAAGAC 1 cut(s) 258
Bpu10I CCTNAGC 1 cut(s) 372
BsaBI GATNNNNATC 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 169
Bse118I RCCGGY 2 cut(s) 164, 191
Bse8I GATNNNNATC 1 cut(s) 76
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 4 cut(s) 77, 301, 349, 382
BseJI GATNNNNATC 1 cut(s) 76
BseMII CTCAG 1 cut(s) 386
BseRI GAGGAG 1 cut(s) 426
BseX3I CGGCCG 1 cut(s) 166
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 169
BsiHKCI CYCGRG 1 cut(s) 8
BsiSI CCGG 2 cut(s) 165, 192
BsmAI GTCTC 1 cut(s) 317
BsmBI CGTCTC 1 cut(s) 317
BsnI GGCC 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 436
Bsp143I GATC 2 cut(s) 71, 85
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 385
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 435
BspQI GCTCTTC 1 cut(s) 281
BsrFI RCCGGY 2 cut(s) 164, 191
BssAI RCCGGY 2 cut(s) 164, 191
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 2 cut(s) 71, 85
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 4 cut(s) 58, 219, 281, 444
BstDEI CTNAG 1 cut(s) 372
BstF5I GGATG 4 cut(s) 77, 301, 349, 382
BstKTI GATC 2 cut(s) 74, 88
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 2 cut(s) 71, 85
BstMCI CGRYCG 1 cut(s) 169
BstNI CCWGG 1 cut(s) 136
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 134
BstV2I GAAGAC 1 cut(s) 258
BstZI CGGCCG 1 cut(s) 166
BsuRI GGCC 1 cut(s) 168
BtsCI GGATG 4 cut(s) 77, 301, 349, 382
CciI TCATGA 1 cut(s) 442
Cfr10I RCCGGY 2 cut(s) 164, 191
Cfr13I GGNCC 1 cut(s) 92
CviAII CATG 5 cut(s) 89, 146, 270, 286, 443
CviJI RGCY 8 cut(s) 168, 183, 231, 274, 329, 371, 397, 434
CviKI_1 RGCY 8 cut(s) 168, 183, 231, 274, 329, 371, 397, 434
DdeI CTNAG 1 cut(s) 372
DpnI GATC 2 cut(s) 73, 87
DpnII GATC 2 cut(s) 71, 85
EaeI YGGCCR 1 cut(s) 166
EagI CGGCCG 1 cut(s) 166
Eam1104I CTCTTC 4 cut(s) 58, 219, 281, 444
EarI CTCTTC 4 cut(s) 58, 219, 281, 444
EclXI CGGCCG 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 92
Eco52I CGGCCG 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 436
Esp3I CGTCTC 1 cut(s) 317
FaeI CATG 5 cut(s) 92, 149, 273, 289, 446
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FatI CATG 5 cut(s) 88, 145, 269, 285, 442
FbaI TGATCA 1 cut(s) 85
FokI GGATG 4 cut(s) 64, 308, 356, 389
FriOI GRGCYC 1 cut(s) 436
HaeIII GGCC 1 cut(s) 168
HapII CCGG 2 cut(s) 165, 192
Hin1II CATG 5 cut(s) 92, 149, 273, 289, 446
HpaII CCGG 2 cut(s) 165, 192
HphI GGTGA 2 cut(s) 154, 181
Hpy166II GTNNAC 1 cut(s) 176
Hpy188I TCNGA 2 cut(s) 214, 302
Hpy188III TCNNGA 4 cut(s) 8, 104, 374, 443
Hpy8I GTNNAC 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 3 cut(s) 149, 289, 456
HpyF3I CTNAG 1 cut(s) 372
Hsp92II CATG 5 cut(s) 92, 149, 273, 289, 446
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 2 cut(s) 71, 85
LguI GCTCTTC 1 cut(s) 281
LmnI GCTCC 1 cut(s) 439
LpnPI CCDG 6 cut(s) 117, 121, 148, 178, 205, 359
LweI GCATC 1 cut(s) 334
MalI GATC 2 cut(s) 73, 87
MboI GATC 2 cut(s) 71, 85
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 6 cut(s) 110, 124, 237, 307, 336, 402
MnlI CCTC 6 cut(s) 4, 164, 197, 220, 296, 447
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 2 cut(s) 165, 192
MspR9I CCNGG 1 cut(s) 136
MvaI CCWGG 1 cut(s) 136
NdeII GATC 2 cut(s) 71, 85
NlaIII CATG 5 cut(s) 92, 149, 273, 289, 446
NlaIV GGNNCC 1 cut(s) 435
NmeAIII GCCGAG 1 cut(s) 194
NspI RCATGY 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 8
PagI TCATGA 1 cut(s) 442
PciSI GCTCTTC 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 435
PspPI GGNCC 1 cut(s) 92
RseI CAYNNNNRTG 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 281
Sau3AI GATC 2 cut(s) 71, 85
Sau96I GGNCC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 136
SduI GDGCHC 1 cut(s) 436
SetI ASST 4 cut(s) 175, 189, 373, 399
SfaNI GCATC 1 cut(s) 334
Sfr274I CTCGAG 1 cut(s) 8
SinI GGWCC 1 cut(s) 92
SlaI CTCGAG 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 6 cut(s) 110, 124, 237, 307, 336, 402
StyD4I CCNGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 257
TaqI TCGA 2 cut(s) 9, 246
TasI AATT 6 cut(s) 110, 124, 237, 307, 336, 402
TspDTI ATGAA 5 cut(s) 237, 249, 327, 431, 476
TspGWI ACGGA 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 92
XapI RAATTY 2 cut(s) 237, 336
XceI RCATGY 1 cut(s) 149
XhoI CTCGAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.