Rmu_sc0000638.1_g000030
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000638.1
OG0000146
Physical Location & Seq
Forward (+)
98023 .. 98592
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000638.1_g000030.1.cds

Sequence Viewer

Length: 570 bp
atgggaattcttctcaaggctatgactccagaggtaatgagattatttgctaactatgattcttccaaagcaatttgggattctgttgctgctacatattatgatgggagggactttgctcgtgttcatgaattgaatgtcaaagctttcaaaataactcaaagtggacagcctattgcatccttttatgcgaatttgaagacaatttggcaggagcttgatcagagaaaccctaatcctatgacttgtgaagttgatattaattcctatcggactgagcaggacaagatgtgtgtccatatttttcttgctggtctggaccctcactttgaaggggcaaagaatgagttattgggtcttgcaactccacctacattggaacaagcttttgcctatatccgaagagatgaaggtaataaggctgcccctcagaaccttcatactgaaattcctggtttagcaatccatgctacacctccacctccacctcaacctcagattgggaattctaccctagtttcatctcagagtcagtatcagccacggaatcagggatatcagcagaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

189

Amino Acids

21.19

Weight (kDa)

5.93

Isoelectric Point (pI)

47.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 6, 193, 447, 505
AfiI CCNNNNNNNGG 1 cut(s) 500
AgsI TTSAA 4 cut(s) 136, 151, 199, 332
AjnI CCWGG 1 cut(s) 451
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 3 cut(s) 146, 217, 386
AluI AGCT 3 cut(s) 146, 217, 386
ApeKI GCWGC 2 cut(s) 89, 422
ApoI RAATTY 4 cut(s) 6, 193, 447, 505
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AseI ATTAAT 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 319
AvaII GGWCC 1 cut(s) 319
BauI CACGAG 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 206
BbvI GCAGC 2 cut(s) 76, 409
BccI CCATC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 453
BclI TGATCA 1 cut(s) 220
BfaI CTAG 2 cut(s) 515, 568
BisI GCNGC 2 cut(s) 90, 423
BlsI GCNGC 2 cut(s) 91, 424
Bme1390I CCNGG 1 cut(s) 453
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 453
BmsI GCATC 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 542
Bsc4I CCNNNNNNNGG 1 cut(s) 500
BseBI CCWGG 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 542
BseGI GGATG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 500
BseMII CTCAG 4 cut(s) 267, 443, 509, 539
BseXI GCAGC 2 cut(s) 76, 409
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 500
BsmFI GGGAC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 220
BspCNI CTCAG 4 cut(s) 268, 442, 508, 538
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 321
BssECI CCNNGG 1 cut(s) 542
BssMI GATC 1 cut(s) 220
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 453
Bst6I CTCTTC 1 cut(s) 397
BstAPI GCANNNNNTGC 1 cut(s) 467
BstDEI CTNAG 4 cut(s) 276, 429, 495, 525
BstDSI CCRYGG 1 cut(s) 542
BstF5I GGATG 1 cut(s) 179
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 467
BstNI CCWGG 1 cut(s) 453
BstSCI CCNGG 1 cut(s) 451
BstV1I GCAGC 2 cut(s) 76, 409
BstV2I GAAGAC 1 cut(s) 206
BtgI CCRYGG 1 cut(s) 542
BtsCI GGATG 1 cut(s) 179
CciI TCATGA 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 319
CspCI CAANNNNNGTGG 2 cut(s) 357, 392
CviAII CATG 2 cut(s) 128, 467
CviJI RGCY 7 cut(s) 20, 146, 172, 217, 386, 422, 541
CviKI_1 RGCY 7 cut(s) 20, 146, 172, 217, 386, 422, 541
DdeI CTNAG 4 cut(s) 276, 429, 495, 525
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 397
EarI CTCTTC 1 cut(s) 397
Eco32I GATATC 1 cut(s) 557
Eco47I GGWCC 1 cut(s) 319
EcoRI GAATTC 2 cut(s) 6, 505
EcoRII CCWGG 1 cut(s) 451
EcoRV GATATC 1 cut(s) 557
FaeI CATG 2 cut(s) 131, 470
FaqI GGGAC 1 cut(s) 125
FatI CATG 2 cut(s) 127, 466
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 90, 423
FokI GGATG 1 cut(s) 166
Fsp4HI GCNGC 2 cut(s) 90, 423
FspBI CTAG 2 cut(s) 515, 568
GluI GCNGC 2 cut(s) 90, 423
GsuI CTGGAG 1 cut(s) 12
Hin1II CATG 2 cut(s) 131, 470
HindIII AAGCTT 2 cut(s) 144, 384
HinfI GANTC 5 cut(s) 25, 59, 80, 529, 547
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 6 cut(s) 225, 273, 401, 432, 498, 528
Hpy188III TCNNGA 3 cut(s) 29, 128, 317
Hpy8I GTNNAC 1 cut(s) 167
HpyAV CCTTC 3 cut(s) 326, 404, 446
HpyCH4V TGCA 2 cut(s) 179, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 467
HpyF3I CTNAG 4 cut(s) 276, 429, 495, 525
Hsp92II CATG 2 cut(s) 131, 470
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 8 cut(s) 42, 197, 266, 297, 302, 438, 465, 536
Lsp1109I GCAGC 2 cut(s) 76, 409
LweI GCATC 1 cut(s) 188
MaeI CTAG 2 cut(s) 515, 568
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 3 cut(s) 54, 211, 414
MluCI AATT 8 cut(s) 6, 72, 131, 193, 204, 262, 447, 505
MlyI GAGTC 2 cut(s) 19, 538
MnlI CCTC 8 cut(s) 25, 102, 333, 438, 486, 492, 498, 504
MseI TTAA 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 453
MvaI CCWGG 1 cut(s) 453
MwoI GCNNNNNNNGC 1 cut(s) 467
NdeII GATC 1 cut(s) 220
NlaIII CATG 2 cut(s) 131, 470
NlaIV GGNNCC 1 cut(s) 321
PagI TCATGA 1 cut(s) 127
PfeI GAWTC 3 cut(s) 59, 80, 547
PkrI GCNGC 2 cut(s) 91, 424
PleI GAGTC 2 cut(s) 19, 537
PpsI GAGTC 2 cut(s) 19, 537
PshBI ATTAAT 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 451
PspGI CCWGG 1 cut(s) 451
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 319
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 2 cut(s) 90, 423
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 319
SchI GAGTC 2 cut(s) 19, 538
ScrFI CCNGG 1 cut(s) 453
SfaNI GCATC 1 cut(s) 188
SinI GGWCC 1 cut(s) 319
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 8 cut(s) 6, 72, 131, 193, 204, 262, 447, 505
SspMI CTAG 2 cut(s) 515, 568
StyD4I CCNGG 1 cut(s) 451
TasI AATT 8 cut(s) 6, 72, 131, 193, 204, 262, 447, 505
TfiI GAWTC 3 cut(s) 59, 80, 547
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseI GCWGC 2 cut(s) 89, 422
TspDTI ATGAA 5 cut(s) 116, 144, 423, 428, 510
TspGWI ACGGA 1 cut(s) 559
VpaK11BI GGWCC 1 cut(s) 319
VspI ATTAAT 1 cut(s) 261
XapI RAATTY 4 cut(s) 6, 193, 447, 505
XspI CTAG 2 cut(s) 515, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.