pycom15g12620
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
8630479 .. 8630921
443 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g12620.1

Sequence Viewer

Length: 402 bp
ATGAAGGACCCAGATGATATCTCATCAAGGCAACAAGAAATTGAGCAACTTCGAGTCTATATTTTTCTTGCAGGATTAGGTAGCAAGTTTGATCGAATTTGTGGTGAGATTTTGAGGATGGAGCCCAAACCTGGTCTTGAAGGAGCCTACTCTCATGTCAAACGTGAAATCAACCGACAAAGAACCATGTCAGAAAGTGCCATCATGCCTGAAGCTACCGTGCTCTTTACCACAAATTCTCGATCTCCACAAGGACCTCAACTTCAGAAAATAAACTCATCAACAGCTGATCGATTTCGTAATCGACCACCTATGCAGTGCACCAAATGCGGACTGAAAAATCATACTATTCAAGGCTATTATGAGATTATTGGCTATCCAGAAGGCATTCACTACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

134

Amino Acids

15.22

Weight (kDa)

8.82

Isoelectric Point (pI)

65.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 330
AcsI RAATTY 2 cut(s) 96, 235
AcuI CTGAAG 2 cut(s) 231, 248
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 2 cut(s) 140, 353
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 2 cut(s) 215, 287
AluI AGCT 2 cut(s) 215, 287
Alw21I GWGCWC 2 cut(s) 225, 323
Alw44I GTGCAC 1 cut(s) 319
ApaLI GTGCAC 1 cut(s) 319
ApoI RAATTY 2 cut(s) 96, 235
Asp700I GAANNNNTTC 1 cut(s) 387
AspS9I GGNCC 2 cut(s) 7, 254
AsuHPI GGTGA 1 cut(s) 116
AvaII GGWCC 2 cut(s) 7, 254
BaeGI GKGCMC 1 cut(s) 323
BanII GRGCYC 1 cut(s) 126
Bbv12I GWGCWC 2 cut(s) 225, 323
BccI CCATC 2 cut(s) 112, 209
BciT130I CCWGG 1 cut(s) 132
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 2 cut(s) 7, 254
BmgT120I GGNCC 2 cut(s) 7, 254
BmiI GGNNCC 3 cut(s) 9, 123, 145
BmrFI CCNGG 1 cut(s) 132
Bsa29I ATCGAT 1 cut(s) 292
Bsc4I CCNNNNNNNGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 132
BseCI ATCGAT 1 cut(s) 292
BseGI GGATG 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 323
BshVI ATCGAT 1 cut(s) 292
BsiHKAI GWGCWC 2 cut(s) 225, 323
BslI CCNNNNNNNGG 1 cut(s) 131
BsmI GAATGC 1 cut(s) 387
Bsp1286I GDGCHC 3 cut(s) 126, 225, 323
Bsp143I GATC 3 cut(s) 91, 242, 289
BspACI CCGC 1 cut(s) 330
BspDI ATCGAT 1 cut(s) 292
BspLI GGNNCC 3 cut(s) 9, 123, 145
BssMI GATC 3 cut(s) 91, 242, 289
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 220
BstAPI GCANNNNNTGC 1 cut(s) 327
BstF5I GGATG 1 cut(s) 123
BstKTI GATC 3 cut(s) 94, 245, 292
BstMBI GATC 3 cut(s) 91, 242, 289
BstMWI GCNNNNNNNGC 1 cut(s) 327
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 323
Bsu15I ATCGAT 1 cut(s) 292
BsuTUI ATCGAT 1 cut(s) 292
BtsCI GGATG 1 cut(s) 123
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 323
Cfr13I GGNCC 2 cut(s) 7, 254
ClaI ATCGAT 1 cut(s) 292
CsiI ACCWGGT 1 cut(s) 130
CviAII CATG 3 cut(s) 155, 187, 205
CviJI RGCY 6 cut(s) 124, 146, 215, 287, 357, 375
CviKI_1 RGCY 6 cut(s) 124, 146, 215, 287, 357, 375
DpnI GATC 3 cut(s) 93, 244, 291
DpnII GATC 3 cut(s) 91, 242, 289
Eco24I GRGCYC 1 cut(s) 126
Eco32I GATATC 1 cut(s) 19
Eco47I GGWCC 2 cut(s) 7, 254
Eco57I CTGAAG 2 cut(s) 231, 248
EcoO109I RGGNCCY 2 cut(s) 7, 254
EcoRII CCWGG 1 cut(s) 130
EcoRV GATATC 1 cut(s) 19
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 3 cut(s) 158, 190, 208
FaiI YATR 7 cut(s) 60, 156, 188, 206, 314, 345, 363
FatI CATG 3 cut(s) 154, 186, 204
FokI GGATG 1 cut(s) 130
FriOI GRGCYC 1 cut(s) 126
Hin1II CATG 3 cut(s) 158, 190, 208
HinfI GANTC 1 cut(s) 54
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 3 cut(s) 193, 267, 401
Hpy188III TCNNGA 3 cut(s) 137, 240, 380
Hpy8I GTNNAC 1 cut(s) 321
HpyAV CCTTC 2 cut(s) 134, 377
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 3 cut(s) 71, 316, 321
HpyF10VI GCNNNNNNNGC 1 cut(s) 327
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 3 cut(s) 158, 190, 208
Kzo9I GATC 3 cut(s) 91, 242, 289
LmnI GCTCC 2 cut(s) 121, 143
LpnPI CCDG 6 cut(s) 24, 57, 117, 144, 222, 393
MabI ACCWGGT 1 cut(s) 130
MaeII ACGT 1 cut(s) 163
MalI GATC 3 cut(s) 93, 244, 291
MboI GATC 3 cut(s) 91, 242, 289
MhlI GDGCHC 3 cut(s) 126, 225, 323
MluCI AATT 3 cut(s) 39, 96, 235
MlyI GAGTC 1 cut(s) 63
MnlI CCTC 2 cut(s) 108, 267
MroXI GAANNNNTTC 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 287
MspR9I CCNGG 1 cut(s) 132
Mva1269I GAATGC 1 cut(s) 387
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 327
NdeII GATC 3 cut(s) 91, 242, 289
NlaIII CATG 3 cut(s) 158, 190, 208
NlaIV GGNNCC 3 cut(s) 9, 123, 145
PctI GAATGC 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 387
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PpuMI RGGWCCY 2 cut(s) 7, 254
Psp5II RGGWCCY 2 cut(s) 7, 254
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 3 cut(s) 9, 123, 145
PspPI GGNCC 2 cut(s) 7, 254
PspPPI RGGWCCY 2 cut(s) 7, 254
PvuII CAGCTG 1 cut(s) 287
Sau3AI GATC 3 cut(s) 91, 242, 289
Sau96I GGNCC 2 cut(s) 7, 254
SchI GAGTC 1 cut(s) 63
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 3 cut(s) 126, 225, 323
SetI ASST 8 cut(s) 82, 133, 166, 217, 259, 289, 313, 399
SexAI ACCWGGT 1 cut(s) 130
SinI GGWCC 2 cut(s) 7, 254
Sse9I AATT 3 cut(s) 39, 96, 235
SsiI CCGC 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 1 cut(s) 166
TaqI TCGA 5 cut(s) 52, 94, 241, 292, 304
TasI AATT 3 cut(s) 39, 96, 235
TscAI CASTG 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 323
VneI GTGCAC 1 cut(s) 319
VpaK11BI GGWCC 2 cut(s) 7, 254
XapI RAATTY 2 cut(s) 96, 235
XmnI GAANNNNTTC 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.