NB-ARC domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 211 - 271 | 4.5e-09 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 186, 816, 819 |
| AclWI | GGATC | 4 cut(s) | 401, 414, 629, 699 |
| AcsI | RAATTY | 3 cut(s) | 296, 314, 970 |
| AcuI | CTGAAG | 1 cut(s) | 725 |
| AcyI | GRCGYC | 1 cut(s) | 144 |
| AfaI | GTAC | 3 cut(s) | 477, 577, 838 |
| AflIII | ACRYGT | 1 cut(s) | 839 |
| AgsI | TTSAA | 4 cut(s) | 229, 452, 683, 725 |
| AjnI | CCWGG | 2 cut(s) | 591, 671 |
| AjuI | GAANNNNNNNTTGG | 5 cut(s) | 422, 454, 698, 730, 986 |
| AluBI | AGCT | 4 cut(s) | 335, 446, 472, 532 |
| AluI | AGCT | 4 cut(s) | 335, 446, 472, 532 |
| AlwI | GGATC | 4 cut(s) | 401, 414, 629, 699 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 791 |
| ApeKI | GCWGC | 1 cut(s) | 791 |
| ApoI | RAATTY | 3 cut(s) | 296, 314, 970 |
| AseI | ATTAAT | 1 cut(s) | 552 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 447 |
| AspLEI | GCGC | 1 cut(s) | 199 |
| AspS9I | GGNCC | 1 cut(s) | 4 |
| AsuHPI | GGTGA | 2 cut(s) | 103, 846 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| BaeGI | GKGCMC | 2 cut(s) | 590, 1011 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 240, 273 |
| BamHI | GGATCC | 1 cut(s) | 406 |
| BbsI | GAAGAC | 1 cut(s) | 503 |
| BbvI | GCAGC | 1 cut(s) | 778 |
| BccI | CCATC | 4 cut(s) | 397, 536, 868, 930 |
| BceAI | ACGGC | 1 cut(s) | 868 |
| BciT130I | CCWGG | 2 cut(s) | 593, 673 |
| BclI | TGATCA | 1 cut(s) | 262 |
| BfaI | CTAG | 4 cut(s) | 53, 173, 473, 503 |
| BisI | GCNGC | 2 cut(s) | 792, 819 |
| BlsI | GCNGC | 2 cut(s) | 793, 820 |
| Bme1390I | CCNGG | 2 cut(s) | 593, 673 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmgT120I | GGNCC | 1 cut(s) | 4 |
| BmiI | GGNNCC | 3 cut(s) | 408, 814, 891 |
| BmrFI | CCNGG | 2 cut(s) | 593, 673 |
| BmsI | GCATC | 1 cut(s) | 385 |
| BpiI | GAAGAC | 1 cut(s) | 503 |
| Bsa29I | ATCGAT | 1 cut(s) | 934 |
| BsaHI | GRCGYC | 1 cut(s) | 144 |
| BsaJI | CCNNGG | 2 cut(s) | 591, 672 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 167, 197, 372, 402 |
| Bse1I | ACTGG | 1 cut(s) | 869 |
| Bse3DI | GCAATG | 1 cut(s) | 147 |
| BseBI | CCWGG | 2 cut(s) | 593, 673 |
| BseCI | ATCGAT | 1 cut(s) | 934 |
| BseDI | CCNNGG | 2 cut(s) | 591, 672 |
| BseGI | GGATG | 5 cut(s) | 309, 400, 512, 588, 637 |
| BseMI | GCAATG | 1 cut(s) | 147 |
| BseNI | ACTGG | 1 cut(s) | 869 |
| BseRI | GAGGAG | 2 cut(s) | 882, 885 |
| BseSI | GKGCMC | 2 cut(s) | 590, 1011 |
| BseXI | GCAGC | 1 cut(s) | 778 |
| BsgI | GTGCAG | 1 cut(s) | 410 |
| BshVI | ATCGAT | 1 cut(s) | 934 |
| BslFI | GGGAC | 2 cut(s) | 119, 711 |
| BsmFI | GGGAC | 2 cut(s) | 119, 711 |
| BsmI | GAATGC | 1 cut(s) | 463 |
| Bsp1286I | GDGCHC | 2 cut(s) | 590, 1011 |
| Bsp1407I | TGTACA | 2 cut(s) | 575, 836 |
| Bsp143I | GATC | 6 cut(s) | 67, 262, 406, 634, 691, 931 |
| BspACI | CCGC | 3 cut(s) | 186, 816, 819 |
| BspDI | ATCGAT | 1 cut(s) | 934 |
| BspLI | GGNNCC | 3 cut(s) | 408, 814, 891 |
| BspPI | GGATC | 4 cut(s) | 401, 414, 629, 699 |
| BspQI | GCTCTTC | 2 cut(s) | 159, 453 |
| BsrDI | GCAATG | 1 cut(s) | 147 |
| BsrGI | TGTACA | 2 cut(s) | 575, 836 |
| BsrI | ACTGG | 1 cut(s) | 869 |
| BssECI | CCNNGG | 2 cut(s) | 591, 672 |
| BssMI | GATC | 6 cut(s) | 67, 262, 406, 634, 691, 931 |
| BssNI | GRCGYC | 1 cut(s) | 144 |
| Bst2UI | CCWGG | 2 cut(s) | 593, 673 |
| Bst4CI | ACNGT | 1 cut(s) | 526 |
| Bst6I | CTCTTC | 2 cut(s) | 159, 453 |
| BstACI | GRCGYC | 1 cut(s) | 144 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 791 |
| BstAUI | TGTACA | 2 cut(s) | 575, 836 |
| BstDEI | CTNAG | 2 cut(s) | 287, 738 |
| BstEII | GGTNACC | 1 cut(s) | 89 |
| BstF5I | GGATG | 5 cut(s) | 309, 400, 512, 588, 637 |
| BstHHI | GCGC | 1 cut(s) | 199 |
| BstKTI | GATC | 6 cut(s) | 70, 265, 409, 637, 694, 934 |
| BstMBI | GATC | 6 cut(s) | 67, 262, 406, 634, 691, 931 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 194, 791, 810 |
| BstNI | CCWGG | 2 cut(s) | 593, 673 |
| BstNSI | RCATGY | 1 cut(s) | 843 |
| BstPI | GGTNACC | 1 cut(s) | 89 |
| BstSCI | CCNGG | 2 cut(s) | 591, 671 |
| BstSLI | GKGCMC | 2 cut(s) | 590, 1011 |
| BstV1I | GCAGC | 1 cut(s) | 778 |
| BstV2I | GAAGAC | 1 cut(s) | 503 |
| BstX2I | RGATCY | 2 cut(s) | 406, 691 |
| BstYI | RGATCY | 2 cut(s) | 406, 691 |
| Bsu15I | ATCGAT | 1 cut(s) | 934 |
| BsuTUI | ATCGAT | 1 cut(s) | 934 |
| BtgZI | GCGATG | 1 cut(s) | 440 |
| BtsCI | GGATG | 5 cut(s) | 309, 400, 512, 588, 637 |
| BtsIMutI | CAGTG | 1 cut(s) | 876 |
| CaiI | CAGNNNCTG | 1 cut(s) | 791 |
| CfoI | GCGC | 1 cut(s) | 199 |
| Cfr13I | GGNCC | 1 cut(s) | 4 |
| ClaI | ATCGAT | 1 cut(s) | 934 |
| CseI | GACGC | 2 cut(s) | 152, 158 |
| Csp6I | GTAC | 3 cut(s) | 476, 576, 837 |
| CviAII | CATG | 6 cut(s) | 204, 237, 465, 579, 799, 840 |
| CviJI | RGCY | 6 cut(s) | 335, 446, 472, 532, 813, 890 |
| CviKI_1 | RGCY | 6 cut(s) | 335, 446, 472, 532, 813, 890 |
| CviQI | GTAC | 3 cut(s) | 476, 576, 837 |
| DdeI | CTNAG | 2 cut(s) | 287, 738 |
| DpnI | GATC | 6 cut(s) | 69, 264, 408, 636, 693, 933 |
| DpnII | GATC | 6 cut(s) | 67, 262, 406, 634, 691, 931 |
| Eam1104I | CTCTTC | 2 cut(s) | 159, 453 |
| EarI | CTCTTC | 2 cut(s) | 159, 453 |
| EciI | GGCGGA | 1 cut(s) | 805 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| Eco57I | CTGAAG | 1 cut(s) | 725 |
| Eco91I | GGTNACC | 1 cut(s) | 89 |
| EcoO65I | GGTNACC | 1 cut(s) | 89 |
| EcoRII | CCWGG | 2 cut(s) | 591, 671 |
| EcoT22I | ATGCAT | 1 cut(s) | 400 |
| FaeI | CATG | 6 cut(s) | 207, 240, 468, 582, 802, 843 |
| FaqI | GGGAC | 2 cut(s) | 119, 711 |
| FatI | CATG | 6 cut(s) | 203, 236, 464, 578, 798, 839 |
| FauNDI | CATATG | 2 cut(s) | 19, 267 |
| FbaI | TGATCA | 1 cut(s) | 262 |
| Fnu4HI | GCNGC | 2 cut(s) | 792, 819 |
| FokI | GGATG | 5 cut(s) | 316, 407, 519, 595, 644 |
| Fsp4HI | GCNGC | 2 cut(s) | 792, 819 |
| FspBI | CTAG | 4 cut(s) | 53, 173, 473, 503 |
| GlaI | GCGC | 1 cut(s) | 198 |
| GluI | GCNGC | 2 cut(s) | 792, 819 |
| HgaI | GACGC | 2 cut(s) | 152, 158 |
| HhaI | GCGC | 1 cut(s) | 199 |
| Hin1I | GRCGYC | 1 cut(s) | 144 |
| Hin1II | CATG | 6 cut(s) | 207, 240, 468, 582, 802, 843 |
| Hin6I | GCGC | 1 cut(s) | 197 |
| HinP1I | GCGC | 1 cut(s) | 197 |
| HindIII | AAGCTT | 1 cut(s) | 530 |
| HinfI | GANTC | 3 cut(s) | 130, 182, 499 |
| HphI | GGTGA | 2 cut(s) | 103, 846 |
| Hpy166II | GTNNAC | 2 cut(s) | 309, 576 |
| Hpy188I | TCNGA | 2 cut(s) | 370, 639 |
| Hpy188III | TCNNGA | 1 cut(s) | 173 |
| Hpy8I | GTNNAC | 2 cut(s) | 309, 576 |
| HpyAV | CCTTC | 6 cut(s) | 205, 682, 700, 736, 861, 867 |
| HpyCH4III | ACNGT | 1 cut(s) | 526 |
| HpyCH4IV | ACGT | 1 cut(s) | 387 |
| HpyCH4V | TGCA | 9 cut(s) | 23, 36, 391, 398, 461, 539, 658, 731, 967 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 194, 791, 810 |
| HpyF3I | CTNAG | 2 cut(s) | 287, 738 |
| HpySE526I | ACGT | 1 cut(s) | 387 |
| Hsp92I | GRCGYC | 1 cut(s) | 144 |
| Hsp92II | CATG | 6 cut(s) | 207, 240, 468, 582, 802, 843 |
| HspAI | GCGC | 1 cut(s) | 197 |
| Ksp22I | TGATCA | 1 cut(s) | 262 |
| Kzo9I | GATC | 6 cut(s) | 67, 262, 406, 634, 691, 931 |
| LguI | GCTCTTC | 2 cut(s) | 159, 453 |
| LmnI | GCTCC | 3 cut(s) | 469, 818, 895 |
| Lsp1109I | GCAGC | 1 cut(s) | 778 |
| LweI | GCATC | 1 cut(s) | 385 |
| MaeI | CTAG | 4 cut(s) | 53, 173, 473, 503 |
| MaeII | ACGT | 1 cut(s) | 387 |
| MaeIII | GTNAC | 3 cut(s) | 89, 220, 613 |
| MalI | GATC | 6 cut(s) | 69, 264, 408, 636, 693, 933 |
| MboI | GATC | 6 cut(s) | 67, 262, 406, 634, 691, 931 |
| MboII | GAAGA | 6 cut(s) | 176, 440, 446, 508, 857, 945 |
| MflI | RGATCY | 2 cut(s) | 406, 691 |
| MhlI | GDGCHC | 2 cut(s) | 590, 1011 |
| MluCI | AATT | 7 cut(s) | 243, 296, 314, 437, 603, 653, 970 |
| MlyI | GAGTC | 2 cut(s) | 176, 493 |
| MmeI | TCCRAC | 1 cut(s) | 469 |
| MnlI | CCTC | 4 cut(s) | 561, 756, 903, 906 |
| Mph1103I | ATGCAT | 1 cut(s) | 400 |
| MroXI | GAANNNNTTC | 1 cut(s) | 447 |
| MseI | TTAA | 3 cut(s) | 534, 552, 599 |
| MslI | CAYNNNNRTG | 2 cut(s) | 356, 583 |
| MspA1I | CMGCKG | 1 cut(s) | 821 |
| MspR9I | CCNGG | 2 cut(s) | 593, 673 |
| Mva1269I | GAATGC | 1 cut(s) | 463 |
| MvaI | CCWGG | 2 cut(s) | 593, 673 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 194, 791, 810 |
| NdeI | CATATG | 2 cut(s) | 19, 267 |
| NdeII | GATC | 6 cut(s) | 67, 262, 406, 634, 691, 931 |
| NlaIII | CATG | 6 cut(s) | 207, 240, 468, 582, 802, 843 |
| NlaIV | GGNNCC | 3 cut(s) | 408, 814, 891 |
| NmuCI | GTSAC | 1 cut(s) | 613 |
| NsiI | ATGCAT | 1 cut(s) | 400 |
| NspI | RCATGY | 1 cut(s) | 843 |
| PciI | ACATGT | 1 cut(s) | 839 |
| PciSI | GCTCTTC | 2 cut(s) | 159, 453 |
| PctI | GAATGC | 1 cut(s) | 463 |
| PdmI | GAANNNNTTC | 1 cut(s) | 447 |
| PfeI | GAWTC | 1 cut(s) | 130 |
| PkrI | GCNGC | 2 cut(s) | 793, 820 |
| PleI | GAGTC | 2 cut(s) | 176, 493 |
| PpsI | GAGTC | 2 cut(s) | 176, 493 |
| PscI | ACATGT | 1 cut(s) | 839 |
| PshBI | ATTAAT | 1 cut(s) | 552 |
| Psp6I | CCWGG | 2 cut(s) | 591, 671 |
| PspEI | GGTNACC | 1 cut(s) | 89 |
| PspGI | CCWGG | 2 cut(s) | 591, 671 |
| PspN4I | GGNNCC | 3 cut(s) | 408, 814, 891 |
| PspPI | GGNCC | 1 cut(s) | 4 |
| PstNI | CAGNNNCTG | 1 cut(s) | 791 |
| PsuI | RGATCY | 2 cut(s) | 406, 691 |
| RsaI | GTAC | 3 cut(s) | 477, 577, 838 |
| RsaNI | GTAC | 3 cut(s) | 476, 576, 837 |
| RseI | CAYNNNNRTG | 2 cut(s) | 356, 583 |
| SapI | GCTCTTC | 2 cut(s) | 159, 453 |
| SaqAI | TTAA | 3 cut(s) | 534, 552, 599 |
| SatI | GCNGC | 2 cut(s) | 792, 819 |
| Sau3AI | GATC | 6 cut(s) | 67, 262, 406, 634, 691, 931 |
| Sau96I | GGNCC | 1 cut(s) | 4 |
| SchI | GAGTC | 2 cut(s) | 176, 493 |
| ScrFI | CCNGG | 2 cut(s) | 593, 673 |
| SduI | GDGCHC | 2 cut(s) | 590, 1011 |
| SfaNI | GCATC | 1 cut(s) | 385 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 356, 583 |
| Sse9I | AATT | 7 cut(s) | 243, 296, 314, 437, 603, 653, 970 |
| SsiI | CCGC | 3 cut(s) | 186, 816, 819 |
| SspI | AATATT | 1 cut(s) | 770 |
| SspMI | CTAG | 4 cut(s) | 53, 173, 473, 503 |
| StyD4I | CCNGG | 2 cut(s) | 591, 671 |
| TaaI | ACNGT | 1 cut(s) | 526 |
| TaiI | ACGT | 1 cut(s) | 390 |
| TaqI | TCGA | 1 cut(s) | 934 |
| TasI | AATT | 7 cut(s) | 243, 296, 314, 437, 603, 653, 970 |
| TatI | WGTACW | 2 cut(s) | 575, 836 |
| TauI | GCSGC | 1 cut(s) | 821 |
| TfiI | GAWTC | 1 cut(s) | 130 |
| Tru1I | TTAA | 3 cut(s) | 534, 552, 599 |
| Tru9I | TTAA | 3 cut(s) | 534, 552, 599 |
| TscAI | CASTG | 1 cut(s) | 876 |
| TseFI | GTSAC | 1 cut(s) | 613 |
| TseI | GCWGC | 1 cut(s) | 791 |
| Tsp45I | GTSAC | 1 cut(s) | 613 |
| TspDTI | ATGAA | 8 cut(s) | 93, 224, 309, 443, 447, 666, 701, 1007 |
| TspRI | CASTG | 1 cut(s) | 876 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| VspI | ATTAAT | 1 cut(s) | 552 |
| XapI | RAATTY | 3 cut(s) | 296, 314, 970 |
| XbaI | TCTAGA | 1 cut(s) | 172 |
| XceI | RCATGY | 1 cut(s) | 843 |
| XmnI | GAANNNNTTC | 1 cut(s) | 447 |
| XspI | CTAG | 4 cut(s) | 53, 173, 473, 503 |
| Zsp2I | ATGCAT | 1 cut(s) | 400 |