Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000146

Physical Location & Seq

Genomic Coordinates Reverse (-)

66614547 .. 66619849

Gene Structure 5303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00047080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGATTAAGTCTGAAACCTTCCAGGTAAAGCATACACATATCAAGGATCCATTCGTCCTAAAATTGATGACAGATCCCACGATAGAGAACATCATTGATCACTTCCGTCCTTTCTTAGTCTGTCCTTCAACCCCAGTCCTTGTTCATCTTTTATGCCCCTCGTTTTCCGATCAAATTCAATCATACTTAATGGAGCCGACACTGTCCTCCTCCTTCCTCGCCATCTTCAAGAAGAAGATCAACCAAATTGATCTCTACCGCCCACTCCGCAACTACATCGCTTTTAATTACTCCGAGCGCAAGGCCCAAAACCTCGAAGACAATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005829 GO:0005911 GO:0006996 GO:0007032 GO:0007033 GO:0007275 GO:0008150 GO:0009506 GO:0009653 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016050 GO:0022603 GO:0030054 GO:0031156 GO:0031285 GO:0031286 GO:0031410 GO:0031982 GO:0032101 GO:0032102 GO:0032104 GO:0032105 GO:0032107 GO:0032108 GO:0032182 GO:0032501 GO:0032502 GO:0036257 GO:0042173 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043621 GO:0043900 GO:0043901 GO:0043937 GO:0043938 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045881 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051241 GO:0055044 GO:0065007 GO:0071840 GO:0075260 GO:0075262 GO:0097708 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ALIX_LYPXL_bnd BRO1

Protein Analysis

109

Amino Acids

12.79

Weight (kDa)

7.81

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica	Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis	pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis	RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata	RLG00000009017
rosa_multiflora	Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii	Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa	Rorug06G0120700
rosa_samantha	Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana	Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	259, 268
AclWI	GGATC	3 cut(s)	41, 54, 68
AcsI	RAATTY	1 cut(s)	174
AgsI	TTSAA	3 cut(s)	129, 179, 229
AjnI	CCWGG	1 cut(s)	21
AlwI	GGATC	3 cut(s)	41, 54, 68
AoxI	GGCC	1 cut(s)	303
ApoI	RAATTY	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	304
BamHI	GGATCC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	324
BccI	CCATC	1 cut(s)	230
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BciT130I	CCWGG	1 cut(s)	23
BclI	TGATCA	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	2 cut(s)	48, 195
BmrFI	CCNGG	1 cut(s)	23
BmrI	ACTGGG	1 cut(s)	128
BmuI	ACTGGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	324
Bse1I	ACTGG	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	305
Bsp143I	GATC	6 cut(s)	46, 73, 97, 169, 237, 250
BspACI	CCGC	2 cut(s)	259, 268
BspANI	GGCC	1 cut(s)	305
BspLI	GGNNCC	2 cut(s)	48, 195
BspPI	GGATC	3 cut(s)	41, 54, 68
BsrI	ACTGG	1 cut(s)	134
BssMI	GATC	6 cut(s)	46, 73, 97, 169, 237, 250
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	6 cut(s)	49, 76, 100, 172, 240, 253
BstMBI	GATC	6 cut(s)	46, 73, 97, 169, 237, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	267
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	324
BstX2I	RGATCY	2 cut(s)	46, 73
BstYI	RGATCY	2 cut(s)	46, 73
BsuRI	GGCC	1 cut(s)	305
BtgZI	GCGATG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	200
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	304
CviJI	RGCY	2 cut(s)	196, 305
CviKI_1	RGCY	2 cut(s)	196, 305
DdeI	CTNAG	1 cut(s)	115
DpnI	GATC	6 cut(s)	48, 75, 99, 171, 239, 252
DpnII	GATC	6 cut(s)	46, 73, 97, 169, 237, 250
EcoRII	CCWGG	1 cut(s)	21
FaiI	YATR	4 cut(s)	33, 39, 154, 184
FbaI	TGATCA	1 cut(s)	97
GlaI	GCGC	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	305
HhaI	GCGC	1 cut(s)	300
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
Hpy188I	TCNGA	3 cut(s)	13, 169, 295
Hpy188III	TCNNGA	1 cut(s)	229
HpyAV	CCTTC	3 cut(s)	28, 135, 223
HpyCH4III	ACNGT	1 cut(s)	204
HpyF10VI	GCNNNNNNNGC	1 cut(s)	267
HpyF3I	CTNAG	1 cut(s)	115
HspAI	GCGC	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	6 cut(s)	46, 73, 97, 169, 237, 250
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	3 cut(s)	8, 35, 147
MalI	GATC	6 cut(s)	48, 75, 99, 171, 239, 252
MboI	GATC	6 cut(s)	46, 73, 97, 169, 237, 250
MboII	GAAGA	4 cut(s)	217, 244, 247, 329
MflI	RGATCY	2 cut(s)	46, 73
MluCI	AATT	4 cut(s)	62, 174, 246, 286
MnlI	CCTC	5 cut(s)	169, 217, 220, 227, 323
MseI	TTAA	3 cut(s)	6, 188, 285
MspR9I	CCNGG	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	267
NdeII	GATC	6 cut(s)	46, 73, 97, 169, 237, 250
NlaIV	GGNNCC	2 cut(s)	48, 195
PflFI	GACNNNGTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	48, 195
PspPI	GGNCC	1 cut(s)	304
PsuI	RGATCY	2 cut(s)	46, 73
PsyI	GACNNNGTC	1 cut(s)	202
SaqAI	TTAA	3 cut(s)	6, 188, 285
Sau3AI	GATC	6 cut(s)	46, 73, 97, 169, 237, 250
Sau96I	GGNCC	1 cut(s)	304
ScrFI	CCNGG	1 cut(s)	23
SetI	ASST	3 cut(s)	20, 27, 315
Sse9I	AATT	4 cut(s)	62, 174, 246, 286
SsiI	CCGC	2 cut(s)	259, 268
StyD4I	CCNGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	315
TasI	AATT	4 cut(s)	62, 174, 246, 286
Tru1I	TTAA	3 cut(s)	6, 188, 285
Tru9I	TTAA	3 cut(s)	6, 188, 285
TscAI	CASTG	1 cut(s)	207
TspDTI	ATGAA	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	1 cut(s)	207
Tth111I	GACNNNGTC	1 cut(s)	202
XapI	RAATTY	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.