RchiOBHm_Chr1g0341931
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000146
Physical Location & Seq
Reverse (-)
33823577 .. 33825644
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56861

Sequence Viewer

Length: 915 bp
ATGCATGTTGTTGGGCGAGAAAAGTTTGGATATTTGACTGGAGAAATCCCACAACCTTCACCAAAAGATCCAACCTACAACAAATGGAGGGCTAACAATGCTCTAGTCAAAGGCTGGCTGATCAATTCAATGTCTTCCACTTTGATGGGCAACTTCATTCGTCTTCCTACAGCTAAGGCGGTTTGGGATGCTGTTGCTAAAACCTACTATGATGGCTTAGATATGTCTCAAGTTTATGAGTTGACTTGCAAGGCCTTCCAAATGCGTCAAAATGGGAGACCAATCACTGCCTATTACTCTGATCTTCAAGGTATTTGGCAAGAGTTAGATCACCGTTGTCCAAGTAACATGGAATGTGCTGCTGATGCTGCTACTTGGAAGAAACAAACTGAGAATCAACGTGTGTACGTGTTCTTGGCTGGTCTAGATCCTGAACTCGATAAAGTTTGCAGTGATGTGATGCGAATGGATCCTTTCCCTGATGTTGAAGTTTCCTTTGCTCATGTTCGACGTGAAGCTCAACGTCAAGTTACAATGATGAATGTCCCTGAAGTTCATGAGGGCTCTGCGATGGTGTTCGGAACTCAGCGAAATGGTGTTGCTCGACCTTCCTTTTCCTCAATTGGTTCCAGTTTGAAGAACACTAAAACAAGAGAGTGTTCTTACTGTGGTGACAGAGGCCATATCCGAGAGACTTGTTTCAAGTTAATCGGCTTCCTAGATTGGTGCTTGGAGCAAAAGGAGCAGCAATCTCAAAAGAAGGATAAAGAAAAGGGAAGAAAGGGAAAGGCATTGCAGATTGCCTCGCAACCATCCTTGGTGTTAAAGGTAGATCAACCTTCTACCAACAATTCTTCATCGACATCTTTGGTTGACTCAGGATCTCCTCAGCAAGGAAATGATTGGTTGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 rve

Protein Analysis

304

Amino Acids

34.35

Weight (kDa)

8.54

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 4 - 110 1.6e-08 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 179
AclWI GGATC 5 cut(s) 62, 422, 464, 477, 889
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 1 cut(s) 893
AflIII ACRYGT 2 cut(s) 400, 408
AgsI TTSAA 5 cut(s) 129, 308, 488, 637, 703
AjiI CACGTC 1 cut(s) 512
AluBI AGCT 2 cut(s) 173, 518
AluI AGCT 2 cut(s) 173, 518
Alw26I GTCTC 3 cut(s) 231, 271, 686
AlwI GGATC 5 cut(s) 62, 422, 464, 477, 889
AoxI GGCC 2 cut(s) 252, 679
ApeKI GCWGC 3 cut(s) 359, 368, 745
AsuHPI GGTGA 3 cut(s) 51, 323, 683
BamHI GGATCC 1 cut(s) 469
BanII GRGCYC 1 cut(s) 566
BbsI GAAGAC 2 cut(s) 126, 155
BbvCI CCTCAGC 1 cut(s) 888
BbvI GCAGC 3 cut(s) 346, 355, 757
BccI CCATC 4 cut(s) 139, 206, 565, 820
BclI TGATCA 1 cut(s) 120
BcoDI GTCTC 3 cut(s) 231, 271, 686
BfaI CTAG 3 cut(s) 104, 425, 719
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 3 cut(s) 360, 369, 746
BlsI GCNGC 3 cut(s) 361, 370, 747
BmgBI CACGTC 1 cut(s) 512
BmiI GGNNCC 2 cut(s) 471, 628
BmsI GCATC 3 cut(s) 178, 355, 450
BpiI GAAGAC 2 cut(s) 126, 155
BpmI CTGGAG 1 cut(s) 60
Bpu10I CCTNAGC 2 cut(s) 174, 888
BpuEI CTTGAG 1 cut(s) 213
BsaAI YACGTR 1 cut(s) 409
BsaI GGTCTC 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 816
Bsc4I CCNNNNNNNGG 1 cut(s) 893
Bse1I ACTGG 2 cut(s) 43, 630
Bse3DI GCAATG 1 cut(s) 791
BseDI CCNNGG 1 cut(s) 816
BseGI GGATG 2 cut(s) 193, 812
BseLI CCNNNNNNNGG 1 cut(s) 893
BseMI GCAATG 1 cut(s) 791
BseMII CTCAG 4 cut(s) 381, 599, 891, 902
BseNI ACTGG 2 cut(s) 43, 630
BseRI GAGGAG 1 cut(s) 876
BseXI GCAGC 3 cut(s) 346, 355, 757
BshFI GGCC 2 cut(s) 254, 681
BslFI GGGAC 1 cut(s) 530
BslI CCNNNNNNNGG 1 cut(s) 893
BsmAI GTCTC 3 cut(s) 231, 271, 686
BsmFI GGGAC 1 cut(s) 530
BsnI GGCC 2 cut(s) 254, 681
Bso31I GGTCTC 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 566
Bsp143I GATC 8 cut(s) 67, 120, 301, 328, 427, 469, 832, 881
BspACI CCGC 1 cut(s) 179
BspANI GGCC 2 cut(s) 254, 681
BspCNI CTCAG 4 cut(s) 382, 598, 890, 901
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 2 cut(s) 471, 628
BspPI GGATC 5 cut(s) 62, 422, 464, 477, 889
BspTNI GGTCTC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 791
BsrI ACTGG 2 cut(s) 43, 630
BssECI CCNNGG 1 cut(s) 816
BssMI GATC 8 cut(s) 67, 120, 301, 328, 427, 469, 832, 881
BssT1I CCWWGG 1 cut(s) 816
Bst4CI ACNGT 2 cut(s) 335, 668
BstBAI YACGTR 1 cut(s) 409
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 6 cut(s) 174, 217, 390, 585, 877, 888
BstENI CCTNNNNNAGG 1 cut(s) 891
BstF5I GGATG 2 cut(s) 193, 812
BstKTI GATC 8 cut(s) 70, 123, 304, 331, 430, 472, 835, 884
BstMAI GTCTC 3 cut(s) 231, 271, 686
BstMBI GATC 8 cut(s) 67, 120, 301, 328, 427, 469, 832, 881
BstMWI GCNNNNNNNGC 4 cut(s) 98, 365, 368, 742
BstNSI RCATGY 1 cut(s) 8
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 3 cut(s) 346, 355, 757
BstV2I GAAGAC 2 cut(s) 126, 155
BstX2I RGATCY 4 cut(s) 67, 427, 469, 881
BstXI CCANNNNNNTGG 1 cut(s) 145
BstYI RGATCY 4 cut(s) 67, 427, 469, 881
BsuRI GGCC 2 cut(s) 254, 681
BtgZI GCGATG 1 cut(s) 584
BtrI CACGTC 1 cut(s) 512
BtsCI GGATG 2 cut(s) 193, 812
BtsI GCAGTG 2 cut(s) 285, 457
BtsIMutI CAGTG 2 cut(s) 285, 457
Cac8I GCNNGC 1 cut(s) 116
CciI TCATGA 1 cut(s) 556
CseI GACGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 406
CviAII CATG 4 cut(s) 5, 349, 503, 557
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 6 cut(s) 174, 217, 390, 585, 877, 888
DpnI GATC 8 cut(s) 69, 122, 303, 330, 429, 471, 834, 883
DpnII GATC 8 cut(s) 67, 120, 301, 328, 427, 469, 832, 881
Eco130I CCWWGG 1 cut(s) 816
Eco147I AGGCCT 1 cut(s) 254
Eco24I GRGCYC 1 cut(s) 566
Eco31I GGTCTC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 570
EcoNI CCTNNNNNAGG 1 cut(s) 891
EcoT14I CCWWGG 1 cut(s) 816
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 566
ErhI CCWWGG 1 cut(s) 816
FaeI CATG 4 cut(s) 8, 352, 506, 560
FaiI YATR 8 cut(s) 6, 210, 224, 237, 350, 504, 558, 684
FaqI GGGAC 1 cut(s) 530
FatI CATG 4 cut(s) 4, 348, 502, 556
FbaI TGATCA 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 360, 369, 746
FokI GGATG 2 cut(s) 200, 799
FriOI GRGCYC 1 cut(s) 566
Fsp4HI GCNGC 3 cut(s) 360, 369, 746
FspBI CTAG 3 cut(s) 104, 425, 719
GluI GCNGC 3 cut(s) 360, 369, 746
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 2 cut(s) 254, 681
HgaI GACGC 1 cut(s) 254
Hin1II CATG 4 cut(s) 8, 352, 506, 560
HincII GTYRAC 2 cut(s) 243, 874
HindII GTYRAC 2 cut(s) 243, 874
HinfI GANTC 2 cut(s) 394, 875
HphI GGTGA 3 cut(s) 51, 323, 683
Hpy166II GTNNAC 3 cut(s) 243, 406, 874
Hpy188I TCNGA 3 cut(s) 301, 581, 689
Hpy188III TCNNGA 4 cut(s) 425, 431, 557, 879
Hpy8I GTNNAC 3 cut(s) 243, 406, 874
Hpy99I CGWCG 1 cut(s) 513
HpyAV CCTTC 5 cut(s) 66, 265, 618, 754, 849
HpyCH4III ACNGT 2 cut(s) 335, 668
HpyCH4IV ACGT 4 cut(s) 400, 408, 511, 523
HpyCH4V TGCA 4 cut(s) 4, 249, 450, 796
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 365, 368, 742
HpyF3I CTNAG 6 cut(s) 174, 217, 390, 585, 877, 888
HpySE526I ACGT 4 cut(s) 400, 408, 511, 523
Hsp92II CATG 4 cut(s) 8, 352, 506, 560
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 8 cut(s) 67, 120, 301, 328, 427, 469, 832, 881
LmnI GCTCC 2 cut(s) 733, 742
LpnPI CCDG 8 cut(s) 24, 100, 405, 444, 492, 561, 643, 864
Lsp1109I GCAGC 3 cut(s) 346, 355, 757
LweI GCATC 3 cut(s) 178, 355, 450
MaeI CTAG 3 cut(s) 104, 425, 719
MaeII ACGT 4 cut(s) 400, 408, 511, 523
MaeIII GTNAC 3 cut(s) 344, 529, 671
MalI GATC 8 cut(s) 69, 122, 303, 330, 429, 471, 834, 883
MboI GATC 8 cut(s) 67, 120, 301, 328, 427, 469, 832, 881
MboII GAAGA 7 cut(s) 126, 155, 296, 391, 649, 789, 846
MfeI CAATTG 1 cut(s) 621
MflI RGATCY 4 cut(s) 67, 427, 469, 881
MhlI GDGCHC 1 cut(s) 566
MluCI AATT 3 cut(s) 124, 621, 850
MlyI GAGTC 1 cut(s) 869
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 6 cut(s) 81, 553, 628, 671, 814, 897
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 707, 824
MslI CAYNNNNRTG 1 cut(s) 143
MunI CAATTG 1 cut(s) 621
MwoI GCNNNNNNNGC 4 cut(s) 98, 365, 368, 742
NdeII GATC 8 cut(s) 67, 120, 301, 328, 427, 469, 832, 881
NlaIII CATG 4 cut(s) 8, 352, 506, 560
NlaIV GGNNCC 2 cut(s) 471, 628
NmuCI GTSAC 1 cut(s) 671
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PagI TCATGA 1 cut(s) 556
PceI AGGCCT 1 cut(s) 254
PfeI GAWTC 1 cut(s) 394
PkrI GCNGC 3 cut(s) 361, 370, 747
PleI GAGTC 1 cut(s) 869
PpsI GAGTC 1 cut(s) 869
Ppu21I YACGTR 1 cut(s) 409
PspN4I GGNNCC 2 cut(s) 471, 628
PsuI RGATCY 4 cut(s) 67, 427, 469, 881
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
RseI CAYNNNNRTG 1 cut(s) 143
SaqAI TTAA 2 cut(s) 707, 824
SatI GCNGC 3 cut(s) 360, 369, 746
Sau3AI GATC 8 cut(s) 67, 120, 301, 328, 427, 469, 832, 881
SchI GAGTC 1 cut(s) 869
SduI GDGCHC 1 cut(s) 566
SfaNI GCATC 3 cut(s) 178, 355, 450
SfcI CTRYAG 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
Sse9I AATT 3 cut(s) 124, 621, 850
SseBI AGGCCT 1 cut(s) 254
SsiI CCGC 1 cut(s) 179
SspMI CTAG 3 cut(s) 104, 425, 719
StuI AGGCCT 1 cut(s) 254
StyI CCWWGG 1 cut(s) 816
TaaI ACNGT 2 cut(s) 335, 668
TaiI ACGT 4 cut(s) 403, 411, 514, 526
TaqI TCGA 4 cut(s) 438, 508, 604, 860
TasI AATT 3 cut(s) 124, 621, 850
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 2 cut(s) 707, 824
Tru9I TTAA 2 cut(s) 707, 824
TscAI CASTG 2 cut(s) 292, 457
TseFI GTSAC 1 cut(s) 671
TseI GCWGC 3 cut(s) 359, 368, 745
Tsp45I GTSAC 1 cut(s) 671
TspDTI ATGAA 4 cut(s) 145, 545, 554, 846
TspRI CASTG 2 cut(s) 292, 457
XagI CCTNNNNNAGG 1 cut(s) 891
XbaI TCTAGA 1 cut(s) 424
XceI RCATGY 1 cut(s) 8
XspI CTAG 3 cut(s) 104, 425, 719
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.