FvH4_4g15582

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000146
Physical Location & Seq
Forward (+)
19315648 .. 19327501
11854 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15582.t1

Sequence Viewer

Length: 609 bp
ATGCGAGTCCACATCTTCTTGAATGGATTGGATTCAATATTTGCTACTGCTAAGGGAGAACTGCTTCGACAAGCCACACCACCAAGTCTGGAACAAGCTTATGCCTATGTACACAAAGATGAATCCAATCAGTCTAGTGCAAAGGAGTTGCATACCGAGGTATCCAACCTCACTGTCCAATCTAAACCTCAACAAGATTGGAAACCAAAGAACCAAGACAGTGAACTTCGAATCCAGCCTGCTCGTGTACCAGATCTTGCTAAGTGCTTCTATTGTAAGGAGTTTGGACACTACAAGAACTCATGTCCTAAGAAAACAAATCAAGGAGCTACCTATGATAAAAGCCGTGGTGACAAGGCTGCCATTCAGTTGGTCCAAGAACCTGATTTCTATGGAATAGGAGGACAAGACCTCACCACAGGCGGTGGGACAGCCAACAAGACTGCTCCAGAAATGGAGAGGGCAGCTGTGGGAGTCCAACGGGACCGGTGGCGTCCCGTTTGGTGGCCGGGAGAGAGAGAAATCGGCTGGAGAAGAGGGAGAGTTCGGGGAGCTCGGGCGTGCCGCATGTCTACGAACTCGTATCGTCATGCTCTACAACTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

203

Amino Acids

22.83

Weight (kDa)

9.49

Isoelectric Point (pI)

58.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 572
AciI CCGC 2 cut(s) 423, 565
AcoI YGGCCR 1 cut(s) 506
AcyI GRCGYC 1 cut(s) 493
AfaI GTAC 2 cut(s) 111, 249
AfiI CCNNNNNNNGG 1 cut(s) 504
AgeI ACCGGT 1 cut(s) 486
AgsI TTSAA 2 cut(s) 22, 36
AloI GAACNNNNNNTCC 2 cut(s) 216, 248
AluBI AGCT 4 cut(s) 98, 329, 467, 554
AluI AGCT 4 cut(s) 98, 329, 467, 554
Alw21I GWGCWC 1 cut(s) 556
Ama87I CYCGRG 1 cut(s) 555
AoxI GGCC 1 cut(s) 506
ApeKI GCWGC 2 cut(s) 359, 464
AsiGI ACCGGT 1 cut(s) 486
Asp700I GAANNNNTTC 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 373, 484
AsuC2I CCSGG 1 cut(s) 510
AsuHPI GGTGA 2 cut(s) 362, 406
AsuII TTCGAA 1 cut(s) 229
AvaI CYCGRG 1 cut(s) 555
AvaII GGWCC 2 cut(s) 373, 484
BaeI ACNNNNGTAYC 2 cut(s) 144, 177
BanII GRGCYC 1 cut(s) 556
BauI CACGAG 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 556
BbvI GCAGC 2 cut(s) 346, 476
BceAI ACGGC 1 cut(s) 330
BciVI GTATCC 1 cut(s) 172
BcnI CCSGG 1 cut(s) 510
BfaI CTAG 1 cut(s) 135
BfuI GTATCC 1 cut(s) 172
BglII AGATCT 1 cut(s) 253
BisI GCNGC 3 cut(s) 360, 465, 565
BlsI GCNGC 3 cut(s) 361, 466, 566
Bme1390I CCNGG 1 cut(s) 510
Bme18I GGWCC 2 cut(s) 373, 484
BmeT110I CYCGRG 1 cut(s) 555
BmgT120I GGNCC 2 cut(s) 373, 484
BmiI GGNNCC 1 cut(s) 485
BmrFI CCNGG 1 cut(s) 510
BpmI CTGGAG 2 cut(s) 432, 550
Bpu10I CCTNAGC 1 cut(s) 51
Bpu14I TTCGAA 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 510
BsaHI GRCGYC 1 cut(s) 493
BsaJI CCNNGG 2 cut(s) 156, 346
BsaWI WCCGGW 1 cut(s) 486
Bsc4I CCNNNNNNNGG 1 cut(s) 504
Bse118I RCCGGY 1 cut(s) 486
BseDI CCNNGG 2 cut(s) 156, 346
BseLI CCNNNNNNNGG 1 cut(s) 504
BseXI GCAGC 2 cut(s) 346, 476
BshFI GGCC 1 cut(s) 508
BshTI ACCGGT 1 cut(s) 486
BsiHKAI GWGCWC 1 cut(s) 556
BsiHKCI CYCGRG 1 cut(s) 555
BsiSI CCGG 2 cut(s) 487, 509
BslFI GGGAC 3 cut(s) 442, 480, 497
BslI CCNNNNNNNGG 1 cut(s) 504
BsmFI GGGAC 3 cut(s) 442, 480, 497
BsnI GGCC 1 cut(s) 508
BsoBI CYCGRG 1 cut(s) 555
Bsp119I TTCGAA 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 556
Bsp1407I TGTACA 1 cut(s) 109
Bsp143I GATC 1 cut(s) 253
BspACI CCGC 2 cut(s) 423, 565
BspANI GGCC 1 cut(s) 508
BspLI GGNNCC 1 cut(s) 485
BspT104I TTCGAA 1 cut(s) 229
BsrFI RCCGGY 1 cut(s) 486
BsrGI TGTACA 1 cut(s) 109
BssAI RCCGGY 1 cut(s) 486
BssECI CCNNGG 2 cut(s) 156, 346
BssMI GATC 1 cut(s) 253
BssNI GRCGYC 1 cut(s) 493
BssSI CACGAG 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 243
Bst4CI ACNGT 2 cut(s) 175, 221
Bst6I CTCTTC 1 cut(s) 529
BstACI GRCGYC 1 cut(s) 493
BstAUI TGTACA 1 cut(s) 109
BstBI TTCGAA 1 cut(s) 229
BstC8I GCNNGC 2 cut(s) 240, 562
BstDEI CTNAG 3 cut(s) 51, 261, 309
BstDSI CCRYGG 1 cut(s) 346
BstKTI GATC 1 cut(s) 256
BstMBI GATC 1 cut(s) 253
BstNSI RCATGY 1 cut(s) 571
BstSCI CCNGG 1 cut(s) 508
BstV1I GCAGC 2 cut(s) 346, 476
BstX2I RGATCY 1 cut(s) 253
BstXI CCANNNNNNTGG 1 cut(s) 370
BstYI RGATCY 1 cut(s) 253
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 508
BtgI CCRYGG 1 cut(s) 346
BtsIMutI CAGTG 2 cut(s) 171, 226
Cac8I GCNNGC 2 cut(s) 240, 562
Cfr10I RCCGGY 1 cut(s) 486
Cfr13I GGNCC 2 cut(s) 373, 484
CseI GACGC 1 cut(s) 482
Csp6I GTAC 2 cut(s) 110, 248
CspAI ACCGGT 1 cut(s) 486
CviAII CATG 4 cut(s) 303, 568, 590, 606
CviQI GTAC 2 cut(s) 110, 248
DdeI CTNAG 3 cut(s) 51, 261, 309
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
EaeI YGGCCR 1 cut(s) 506
Eam1104I CTCTTC 1 cut(s) 529
EarI CTCTTC 1 cut(s) 529
Ecl136II GAGCTC 1 cut(s) 554
Eco24I GRGCYC 1 cut(s) 556
Eco47I GGWCC 2 cut(s) 373, 484
Eco53kI GAGCTC 1 cut(s) 554
Eco88I CYCGRG 1 cut(s) 555
EcoICRI GAGCTC 1 cut(s) 554
EcoT38I GRGCYC 1 cut(s) 556
FaeI CATG 4 cut(s) 306, 571, 593, 609
FaiI YATR 9 cut(s) 102, 108, 153, 304, 336, 393, 569, 591, 607
FaqI GGGAC 3 cut(s) 442, 480, 497
FatI CATG 4 cut(s) 302, 567, 589, 605
FblI GTMKAC 1 cut(s) 572
Fnu4HI GCNGC 3 cut(s) 360, 465, 565
FriOI GRGCYC 1 cut(s) 556
Fsp4HI GCNGC 3 cut(s) 360, 465, 565
FspBI CTAG 1 cut(s) 135
GluI GCNGC 3 cut(s) 360, 465, 565
GsuI CTGGAG 2 cut(s) 432, 550
HaeIII GGCC 1 cut(s) 508
HapII CCGG 2 cut(s) 487, 509
HgaI GACGC 1 cut(s) 482
Hin1I GRCGYC 1 cut(s) 493
Hin1II CATG 4 cut(s) 306, 571, 593, 609
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 5 cut(s) 6, 32, 122, 231, 474
HpaII CCGG 2 cut(s) 487, 509
HphI GGTGA 2 cut(s) 362, 406
Hpy166II GTNNAC 5 cut(s) 10, 112, 224, 248, 573
Hpy188III TCNNGA 3 cut(s) 19, 89, 449
Hpy8I GTNNAC 5 cut(s) 10, 112, 224, 248, 573
HpyCH4III ACNGT 2 cut(s) 175, 221
HpyCH4V TGCA 2 cut(s) 140, 151
HpyF3I CTNAG 3 cut(s) 51, 261, 309
Hsp92I GRCGYC 1 cut(s) 493
Hsp92II CATG 4 cut(s) 306, 571, 593, 609
Kzo9I GATC 1 cut(s) 253
LmnI GCTCC 3 cut(s) 326, 451, 551
Lsp1109I GCAGC 2 cut(s) 346, 476
MaeI CTAG 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 350
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 2 cut(s) 7, 546
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 556
MlyI GAGTC 2 cut(s) 15, 483
MmeI TCCRAC 2 cut(s) 189, 502
MnlI CCTC 7 cut(s) 151, 179, 198, 395, 422, 453, 530
MroXI GAANNNNTTC 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 2 cut(s) 487, 509
MspR9I CCNGG 1 cut(s) 510
NciI CCSGG 1 cut(s) 510
NdeII GATC 1 cut(s) 253
NlaIII CATG 4 cut(s) 306, 571, 593, 609
NlaIV GGNNCC 1 cut(s) 485
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 1 cut(s) 571
NspV TTCGAA 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 3 cut(s) 32, 122, 231
PinAI ACCGGT 1 cut(s) 486
PkrI GCNGC 3 cut(s) 361, 466, 566
PleI GAGTC 2 cut(s) 14, 482
PpsI GAGTC 2 cut(s) 14, 482
Psp124BI GAGCTC 1 cut(s) 556
PspN4I GGNNCC 1 cut(s) 485
PspPI GGNCC 2 cut(s) 373, 484
PsuI RGATCY 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 2 cut(s) 111, 249
RsaNI GTAC 2 cut(s) 110, 248
RseI CAYNNNNRTG 1 cut(s) 117
SacI GAGCTC 1 cut(s) 556
SatI GCNGC 3 cut(s) 360, 465, 565
Sau3AI GATC 1 cut(s) 253
Sau96I GGNCC 2 cut(s) 373, 484
SchI GAGTC 2 cut(s) 15, 483
ScrFI CCNGG 1 cut(s) 510
SduI GDGCHC 1 cut(s) 556
SfuI TTCGAA 1 cut(s) 229
SinI GGWCC 2 cut(s) 373, 484
SmiMI CAYNNNNRTG 1 cut(s) 117
SsiI CCGC 2 cut(s) 423, 565
SspI AATATT 1 cut(s) 39
SspMI CTAG 1 cut(s) 135
SstI GAGCTC 1 cut(s) 556
StyD4I CCNGG 1 cut(s) 508
TaaI ACNGT 2 cut(s) 175, 221
TaqI TCGA 2 cut(s) 67, 229
TatI WGTACW 1 cut(s) 109
TauI GCSGC 1 cut(s) 567
TfiI GAWTC 3 cut(s) 32, 122, 231
TscAI CASTG 2 cut(s) 178, 226
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 2 cut(s) 359, 464
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 1 cut(s) 135
TspRI CASTG 2 cut(s) 178, 226
VpaK11BI GGWCC 2 cut(s) 373, 484
XceI RCATGY 1 cut(s) 571
XmiI GTMKAC 1 cut(s) 572
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.