Rmu_sc0000633.1_g000002

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000633.1
OG0000146
Physical Location & Seq
Reverse (-)
4402 .. 5805
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000633.1_g000002.1.cds

Sequence Viewer

Length: 807 bp
atgttgttcgctttttcctcctgttcgcttggcttcgtcttcagccaaagacagatcgattggtcccaggtcggtccttctcagattgtcggcgctcttctcccaaaccttcagtccagaccggcctcgtcttgtgtcccagaccgccttcgtctgcctctgacaccagatggatcttcgtctgccttcgtttaccttagattgctaaatctcttctgccttcgtttgcctcagatcgtcgaatcccttcagtcgacgtccacgattgtgacctcgactcagtccagcgtcgccccgcttccggtcgtccctctccctcagtcagaccagctaaactcggtaacccgagccatgactgatgatgtgctacagatggtagaggaatgtgaaactgctgaggcaatatggaagacgttgggagatctctatacaaatgagtctgattttatacaggttcatgaactaatgtgcaaagctgcaggaatgcaacagaatgggcaaccagtgtccaaggagaaggagctagaaaggcttcatgtcttcctgagagggcttgatgagaagcatagcagtgccaagggagaattgctcagaatgacagaccctcctagtttgaacacagcttttacatacatccgcaaggataagtctcaacaggaaagtgtcaaacatgcacaggttaaagtatctagcctagccattcaagccaagtcacatgctgatgagaagcatagcagtgccaagggagaattgctcagaatgacagaccctcctagtttgaacacagcttttactccgcaaggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

268

Amino Acids

29.52

Weight (kDa)

6.08

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 254
AciI CCGC 4 cut(s) 145, 296, 637, 797
AclWI GGATC 1 cut(s) 181
AcuI CTGAAG 3 cut(s) 25, 95, 233
AcyI GRCGYC 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 3 cut(s) 616, 704, 781
AjnI CCWGG 1 cut(s) 66
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 5 cut(s) 331, 476, 523, 623, 788
AluI AGCT 5 cut(s) 331, 476, 523, 623, 788
Alw26I GTCTC 1 cut(s) 654
AlwI GGATC 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 345
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 476
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp700I GAANNNNTTC 2 cut(s) 246, 531
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 2 cut(s) 63, 74
AvaI CYCGRG 1 cut(s) 345
AvaII GGWCC 2 cut(s) 63, 74
BbsI GAAGAC 3 cut(s) 31, 416, 532
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 1 cut(s) 463
BccI CCATC 2 cut(s) 164, 367
BciT130I CCWGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 654
BfaI CTAG 5 cut(s) 524, 609, 690, 695, 774
BfmI CTRYAG 2 cut(s) 368, 477
BfoI RGCGCY 1 cut(s) 96
BglII AGATCT 1 cut(s) 421
BisI GCNGC 1 cut(s) 477
BlsI GCNGC 1 cut(s) 478
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 2 cut(s) 63, 74
BmeT110I CYCGRG 1 cut(s) 345
BmgT120I GGNCC 2 cut(s) 63, 74
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 1 cut(s) 68
BpiI GAAGAC 3 cut(s) 31, 416, 532
BplI GAGNNNNNCTC 4 cut(s) 573, 605, 738, 770
Bpu10I CCTNAGC 1 cut(s) 396
Bsa29I ATCGAT 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 4 cut(s) 66, 510, 576, 741
BsaWI WCCGGW 1 cut(s) 301
BsaXI ACNNNNNCTCC 4 cut(s) 589, 619, 754, 784
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 503
BseBI CCWGG 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 4 cut(s) 66, 510, 576, 741
BseGI GGATG 1 cut(s) 633
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 8 cut(s) 95, 245, 293, 332, 387, 536, 604, 769
BseNI ACTGG 1 cut(s) 503
BseXI GCAGC 1 cut(s) 463
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 1 cut(s) 125
BshVI ATCGAT 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 345
BsiSI CCGG 2 cut(s) 122, 302
BslFI GGGAC 3 cut(s) 49, 122, 293
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 654
BsmFI GGGAC 3 cut(s) 49, 122, 293
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 345
Bsp143I GATC 4 cut(s) 54, 173, 234, 421
BspACI CCGC 4 cut(s) 145, 296, 637, 797
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 8 cut(s) 94, 244, 292, 331, 388, 537, 603, 768
BspDI ATCGAT 1 cut(s) 57
BspHI TCATGA 1 cut(s) 457
BspLI GGNNCC 1 cut(s) 65
BspMAI CTGCAG 1 cut(s) 481
BspPI GGATC 1 cut(s) 181
BspQI GCTCTTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 121
BsrI ACTGG 1 cut(s) 503
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 4 cut(s) 66, 510, 576, 741
BssMI GATC 4 cut(s) 54, 173, 234, 421
BssNI GRCGYC 1 cut(s) 257
BssT1I CCWWGG 3 cut(s) 510, 576, 741
Bst2UI CCWGG 1 cut(s) 68
Bst6I CTCTTC 2 cut(s) 102, 218
BstACI GRCGYC 1 cut(s) 257
BstDEI CTNAG 9 cut(s) 81, 197, 231, 279, 318, 396, 545, 590, 755
BstEII GGTNACC 1 cut(s) 340
BstF5I GGATG 1 cut(s) 633
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 4 cut(s) 57, 176, 237, 424
BstMAI GTCTC 1 cut(s) 654
BstMBI GATC 4 cut(s) 54, 173, 234, 421
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 2 cut(s) 529, 704
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 2 cut(s) 674, 719
BstPI GGTNACC 1 cut(s) 340
BstSCI CCNGG 1 cut(s) 66
BstSFI CTRYAG 2 cut(s) 368, 477
BstV1I GCAGC 1 cut(s) 463
BstV2I GAAGAC 3 cut(s) 31, 416, 532
BstX2I RGATCY 2 cut(s) 173, 421
BstYI RGATCY 2 cut(s) 173, 421
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 1 cut(s) 125
BsuTUI ATCGAT 1 cut(s) 57
BtsCI GGATG 1 cut(s) 633
BtsI GCAGTG 2 cut(s) 577, 742
BtsIMutI CAGTG 3 cut(s) 510, 577, 742
CciI TCATGA 1 cut(s) 457
CfoI GCGC 1 cut(s) 95
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 63, 74
ClaI ATCGAT 1 cut(s) 57
CseI GACGC 1 cut(s) 277
CviAII CATG 5 cut(s) 352, 458, 536, 671, 716
DdeI CTNAG 9 cut(s) 81, 197, 231, 279, 318, 396, 545, 590, 755
DpnI GATC 4 cut(s) 56, 175, 236, 423
DpnII GATC 4 cut(s) 54, 173, 234, 421
Eam1104I CTCTTC 2 cut(s) 102, 218
EarI CTCTTC 2 cut(s) 102, 218
Eco130I CCWWGG 3 cut(s) 510, 576, 741
Eco47I GGWCC 2 cut(s) 63, 74
Eco57I CTGAAG 3 cut(s) 25, 95, 233
Eco88I CYCGRG 1 cut(s) 345
Eco91I GGTNACC 1 cut(s) 340
EcoO65I GGTNACC 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 3 cut(s) 510, 576, 741
ErhI CCWWGG 3 cut(s) 510, 576, 741
FaeI CATG 5 cut(s) 355, 461, 539, 674, 719
FaqI GGGAC 3 cut(s) 49, 122, 293
FatI CATG 5 cut(s) 351, 457, 535, 670, 715
FauI CCCGC 1 cut(s) 303
FblI GTMKAC 1 cut(s) 254
Fnu4HI GCNGC 1 cut(s) 477
FokI GGATG 1 cut(s) 620
Fsp4HI GCNGC 1 cut(s) 477
FspBI CTAG 5 cut(s) 524, 609, 690, 695, 774
GlaI GCGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 477
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 1 cut(s) 125
HapII CCGG 2 cut(s) 122, 302
HgaI GACGC 1 cut(s) 277
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 5 cut(s) 355, 461, 539, 674, 719
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HinfI GANTC 3 cut(s) 242, 277, 437
HpaII CCGG 2 cut(s) 122, 302
Hpy166II GTNNAC 3 cut(s) 193, 255, 261
Hpy188I TCNGA 7 cut(s) 84, 162, 234, 325, 442, 593, 758
Hpy188III TCNNGA 3 cut(s) 117, 458, 544
Hpy8I GTNNAC 3 cut(s) 193, 255, 261
Hpy99I CGWCG 3 cut(s) 242, 259, 293
HpyAV CCTTC 7 cut(s) 87, 119, 158, 196, 230, 257, 511
HpyCH4IV ACGT 2 cut(s) 257, 413
HpyCH4V TGCA 4 cut(s) 471, 479, 487, 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 529, 704
HpyF3I CTNAG 9 cut(s) 81, 197, 231, 279, 318, 396, 545, 590, 755
HpySE526I ACGT 2 cut(s) 257, 413
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 5 cut(s) 355, 461, 539, 674, 719
HspAI GCGC 1 cut(s) 93
Kzo9I GATC 4 cut(s) 54, 173, 234, 421
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 520
Lsp1109I GCAGC 1 cut(s) 463
MaeI CTAG 5 cut(s) 524, 609, 690, 695, 774
MaeII ACGT 2 cut(s) 257, 413
MaeIII GTNAC 3 cut(s) 268, 340, 711
MalI GATC 4 cut(s) 56, 175, 236, 423
MboI GATC 4 cut(s) 54, 173, 234, 421
MboII GAAGA 6 cut(s) 31, 89, 168, 205, 421, 532
MflI RGATCY 2 cut(s) 173, 421
MluCI AATT 2 cut(s) 584, 749
MlyI GAGTC 2 cut(s) 271, 446
MroXI GAANNNNTTC 2 cut(s) 246, 531
MseI TTAA 1 cut(s) 681
MslI CAYNNNNRTG 4 cut(s) 266, 570, 720, 735
MspI CCGG 2 cut(s) 122, 302
MspR9I CCNGG 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 489
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 529, 704
NdeII GATC 4 cut(s) 54, 173, 234, 421
NlaIII CATG 5 cut(s) 355, 461, 539, 674, 719
NlaIV GGNNCC 1 cut(s) 65
NmuCI GTSAC 2 cut(s) 268, 711
NspI RCATGY 2 cut(s) 674, 719
OliI CACNNNNGTG 1 cut(s) 266
PagI TCATGA 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 102
PcsI WCGNNNNNNNCGW 1 cut(s) 260
PctI GAATGC 1 cut(s) 489
PdmI GAANNNNTTC 2 cut(s) 246, 531
PfeI GAWTC 1 cut(s) 242
PflFI GACNNNGTC 1 cut(s) 280
PkrI GCNGC 1 cut(s) 478
PleI GAGTC 2 cut(s) 271, 445
PpsI GAGTC 2 cut(s) 271, 445
Psp6I CCWGG 1 cut(s) 66
PspEI GGTNACC 1 cut(s) 340
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 65
PspPI GGNCC 2 cut(s) 63, 74
PstI CTGCAG 1 cut(s) 481
PsuI RGATCY 2 cut(s) 173, 421
PsyI GACNNNGTC 1 cut(s) 280
RseI CAYNNNNRTG 4 cut(s) 266, 570, 720, 735
SalI GTCGAC 1 cut(s) 253
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 681
SatI GCNGC 1 cut(s) 477
Sau3AI GATC 4 cut(s) 54, 173, 234, 421
Sau96I GGNCC 2 cut(s) 63, 74
SchI GAGTC 2 cut(s) 271, 446
ScrFI CCNGG 1 cut(s) 68
SfcI CTRYAG 2 cut(s) 368, 477
SinI GGWCC 2 cut(s) 63, 74
SmiMI CAYNNNNRTG 4 cut(s) 266, 570, 720, 735
Sse9I AATT 2 cut(s) 584, 749
SsiI CCGC 4 cut(s) 145, 296, 637, 797
SspMI CTAG 5 cut(s) 524, 609, 690, 695, 774
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 3 cut(s) 510, 576, 741
TaiI ACGT 2 cut(s) 260, 416
TaqI TCGA 4 cut(s) 57, 240, 254, 275
TaqII GACCGA 1 cut(s) 62
TasI AATT 2 cut(s) 584, 749
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 1 cut(s) 681
Tru9I TTAA 1 cut(s) 681
TscAI CASTG 3 cut(s) 510, 577, 742
TseFI GTSAC 2 cut(s) 268, 711
TseI GCWGC 1 cut(s) 476
Tsp45I GTSAC 2 cut(s) 268, 711
TspDTI ATGAA 3 cut(s) 446, 474, 524
TspRI CASTG 3 cut(s) 510, 577, 742
Tth111I GACNNNGTC 1 cut(s) 280
VpaK11BI GGWCC 2 cut(s) 63, 74
XceI RCATGY 2 cut(s) 674, 719
XmiI GTMKAC 1 cut(s) 254
XmnI GAANNNNTTC 2 cut(s) 246, 531
XspI CTAG 5 cut(s) 524, 609, 690, 695, 774
ZraI GACGTC 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.