Rmu_sc0000602.1_g000001

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000602.1
OG0000146
Physical Location & Seq
Reverse (-)
3368 .. 4147
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000602.1_g000001.1.cds

Sequence Viewer

Length: 417 bp
atgtggattcgcattggagcacgagggaaggttggttatttgatcggagtgaaggctgaacccgccataaattctgcagagtatgaagcttgggccacggacagtgaaaaggtgaaaagttggctcattgactccatggagtcctctcttataaccaagaaaatggagaacaagaaagaaagccacctcttcttttccctgaccttcactttcctccttcctctctcaagtcccaaccctcctcctcttccccacctccgtccccttcctctctcaagtcccaacccgaatccatctcttaaacctccgaacccgacctggactctctctcacttcaactccacctccgtctttaccgcgacgccctctgcttcaaaaccctcacctctctcgctgtcgccatcacctgcaacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

138

Amino Acids

15.08

Weight (kDa)

9.52

Isoelectric Point (pI)

52.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
AccII CGCG 1 cut(s) 359
AciI CCGC 2 cut(s) 63, 357
AcsI RAATTY 1 cut(s) 70
AcyI GRCGYC 1 cut(s) 362
AgsI TTSAA 2 cut(s) 337, 375
AjnI CCWGG 1 cut(s) 317
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
Alw21I GWGCWC 1 cut(s) 22
AoxI GGCC 1 cut(s) 93
ApoI RAATTY 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 93
AsuHPI GGTGA 3 cut(s) 124, 375, 396
BauI CACGAG 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 22
BccI CCATC 2 cut(s) 301, 409
BciT130I CCWGG 1 cut(s) 319
BfmI CTRYAG 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 319
BpuEI CTTGAG 2 cut(s) 211, 259
BsaHI GRCGYC 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 96, 135
BsaXI ACNNNNNCTCC 4 cut(s) 323, 329, 353, 359
BseBI CCWGG 1 cut(s) 319
BseDI CCNNGG 2 cut(s) 96, 135
BseRI GAGGAG 2 cut(s) 231, 234
Bsh1236I CGCG 1 cut(s) 359
BshFI GGCC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 22
BslFI GGGAC 3 cut(s) 216, 246, 264
BsmFI GGGAC 3 cut(s) 216, 246, 264
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 1 cut(s) 42
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 2 cut(s) 63, 357
BspANI GGCC 1 cut(s) 95
BspFNI CGCG 1 cut(s) 359
BspMAI CTGCAG 1 cut(s) 79
BssECI CCNNGG 2 cut(s) 96, 135
BssMI GATC 1 cut(s) 42
BssNI GRCGYC 1 cut(s) 362
BssSI CACGAG 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 1 cut(s) 104
Bst6I CTCTTC 2 cut(s) 194, 252
BstACI GRCGYC 1 cut(s) 362
BstDSI CCRYGG 2 cut(s) 96, 135
BstFNI CGCG 1 cut(s) 359
BstKTI GATC 1 cut(s) 45
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 319
BstSCI CCNGG 1 cut(s) 317
BstSFI CTRYAG 1 cut(s) 75
BstUI CGCG 1 cut(s) 359
BstXI CCANNNNNNTGG 1 cut(s) 163
BsuRI GGCC 1 cut(s) 95
BtgI CCRYGG 2 cut(s) 96, 135
BtsIMutI CAGTG 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 93
CseI GACGC 1 cut(s) 370
CviAII CATG 1 cut(s) 136
CviJI RGCY 5 cut(s) 56, 89, 95, 124, 183
CviKI_1 RGCY 5 cut(s) 56, 89, 95, 124, 183
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eam1104I CTCTTC 2 cut(s) 194, 252
EarI CTCTTC 2 cut(s) 194, 252
Eco130I CCWWGG 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 1 cut(s) 139
FaiI YATR 4 cut(s) 68, 84, 137, 152
FaqI GGGAC 3 cut(s) 216, 246, 264
FatI CATG 1 cut(s) 135
FauI CCCGC 1 cut(s) 70
HaeIII GGCC 1 cut(s) 95
HgaI GACGC 1 cut(s) 370
Hin1I GRCGYC 1 cut(s) 362
Hin1II CATG 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 5 cut(s) 7, 131, 140, 289, 322
HphI GGTGA 3 cut(s) 124, 375, 396
Hpy188I TCNGA 2 cut(s) 47, 309
Hpy99I CGWCG 1 cut(s) 364
HpyAV CCTTC 5 cut(s) 22, 46, 214, 227, 275
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 2 cut(s) 77, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
Hsp92I GRCGYC 1 cut(s) 362
Hsp92II CATG 1 cut(s) 139
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 3 cut(s) 212, 304, 331
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 2 cut(s) 181, 239
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 1 cut(s) 70
MlyI GAGTC 3 cut(s) 125, 149, 316
MseI TTAA 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 319
MvaI CCWGG 1 cut(s) 319
MvnI CGCG 1 cut(s) 359
MwoI GCNNNNNNNGC 1 cut(s) 62
NcoI CCATGG 1 cut(s) 135
NdeII GATC 1 cut(s) 42
NlaIII CATG 1 cut(s) 139
PfeI GAWTC 2 cut(s) 7, 289
PleI GAGTC 3 cut(s) 125, 148, 316
PpsI GAGTC 3 cut(s) 125, 148, 316
PsiI TTATAA 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 317
PspGI CCWGG 1 cut(s) 317
PspPI GGNCC 1 cut(s) 93
PstI CTGCAG 1 cut(s) 79
SaqAI TTAA 1 cut(s) 300
Sau3AI GATC 1 cut(s) 42
Sau96I GGNCC 1 cut(s) 93
SchI GAGTC 3 cut(s) 125, 149, 316
ScrFI CCNGG 1 cut(s) 319
SduI GDGCHC 1 cut(s) 22
SfcI CTRYAG 1 cut(s) 75
SmlI CTYRAG 2 cut(s) 226, 274
SmoI CTYRAG 2 cut(s) 226, 274
Sse9I AATT 1 cut(s) 70
SsiI CCGC 2 cut(s) 63, 357
StyD4I CCNGG 1 cut(s) 317
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 104
TasI AATT 1 cut(s) 70
TfiI GAWTC 2 cut(s) 7, 289
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 99
TspGWI ACGGA 3 cut(s) 113, 248, 337
TspRI CASTG 1 cut(s) 109
XapI RAATTY 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.