Prupe.8G071700_v2.0.a1
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000146
Physical Location & Seq
Reverse (-)
10502726 .. 10503556
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G071700.1

Sequence Viewer

Length: 672 bp
ATGTCAGATGTCACTGTATCTTCTTCTTCTGCTCCTATTGTGACGGTTCATACCGAATCATCCACTAACCTACCTATGGGATTCAAATTGAATGGATCCAACTATGAGATATGGGCTTTCATGATCGAACTCTATGCTACTATACAAGGCAAATTGGGTTACCTGACTGGCTACACTGATGCCCCTGATTCCCAAGACCCAAAATTTGAGAAGTGGAAAATTGCTGATGCTGTTGTGAAAAGTTGGATGCTGCGAACTATAGAACCCAATTTGTTGAATATGTTTCATACTCTACCTACTGCTAAGGAAATTTGGGATGCTGCAATCTGGCTTGAATTAGACAAGAGATGTCCTTTTCAGATGAAGTGTGCTGATGATATGAAGACTTATCATGTGTATGATTTTTTGGCTGGCCTTGACGATACTTATGACAAGAGTGATAAAGTTCCAAGTATCGAAAATGTATTTTTTATGGTTCGTCGAGAGGCGCAATGCCAAATTACTATGCTTGGATCCGGCACCAAGATTGGGGAACCTGCTGTTGTGTTTGCTTCCAAAAACATTGCTTTGGTTTCTCGGCCTACAGGGTCTGGCTCTTCTGCTGTTCTGCCTCATCGCCTAACTTCTGCAAAAAACAAAAAAAACAAAAAAAAAAAACAAACTGAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

224

Amino Acids

24.96

Weight (kDa)

8.31

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 544
AccB1I GGYRCC 1 cut(s) 518
AclWI GGATC 4 cut(s) 90, 103, 507, 520
AcsI RAATTY 2 cut(s) 203, 309
AfiI CCNNNNNNNGG 2 cut(s) 76, 528
AgsI TTSAA 4 cut(s) 85, 91, 277, 335
AlwI GGATC 4 cut(s) 90, 103, 507, 520
AlwNI CAGNNNCTG 1 cut(s) 590
AoxI GGCC 2 cut(s) 412, 578
ApeKI GCWGC 2 cut(s) 250, 320
ApoI RAATTY 2 cut(s) 203, 309
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
AspLEI GCGC 1 cut(s) 490
BamHI GGATCC 2 cut(s) 95, 512
BanI GGYRCC 1 cut(s) 518
BbsI GAAGAC 1 cut(s) 389
BbvI GCAGC 2 cut(s) 237, 307
BcgI CGANNNNNNTGC 2 cut(s) 116, 150
BfmI CTRYAG 2 cut(s) 258, 582
BfuAI ACCTGC 1 cut(s) 544
BisI GCNGC 2 cut(s) 251, 321
BlsI GCNGC 2 cut(s) 252, 322
BmiI GGNNCC 4 cut(s) 97, 514, 520, 534
BmsI GCATC 4 cut(s) 169, 217, 237, 307
BpiI GAAGAC 1 cut(s) 389
Bpu10I CCTNAGC 1 cut(s) 303
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 528
Bse1I ACTGG 1 cut(s) 172
Bse3DI GCAATG 2 cut(s) 497, 561
BseGI GGATG 3 cut(s) 59, 252, 322
BseLI CCNNNNNNNGG 2 cut(s) 76, 528
BseMI GCAATG 2 cut(s) 497, 561
BseNI ACTGG 1 cut(s) 172
BseXI GCAGC 2 cut(s) 237, 307
BshFI GGCC 2 cut(s) 414, 580
BshNI GGYRCC 1 cut(s) 518
BsiSI CCGG 1 cut(s) 516
BslI CCNNNNNNNGG 2 cut(s) 76, 528
BsnI GGCC 2 cut(s) 414, 580
Bsp143I GATC 3 cut(s) 95, 123, 512
BspANI GGCC 2 cut(s) 414, 580
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 4 cut(s) 97, 514, 520, 534
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 4 cut(s) 90, 103, 507, 520
BspQI GCTCTTC 1 cut(s) 601
BspT107I GGYRCC 1 cut(s) 518
BsrDI GCAATG 2 cut(s) 497, 561
BsrI ACTGG 1 cut(s) 172
BssMI GATC 3 cut(s) 95, 123, 512
Bst4CI ACNGT 2 cut(s) 16, 46
Bst6I CTCTTC 1 cut(s) 601
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 1 cut(s) 303
BstEII GGTNACC 1 cut(s) 158
BstF5I GGATG 3 cut(s) 59, 252, 322
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 3 cut(s) 98, 126, 515
BstMBI GATC 3 cut(s) 95, 123, 512
BstPI GGTNACC 1 cut(s) 158
BstSFI CTRYAG 2 cut(s) 258, 582
BstV1I GCAGC 2 cut(s) 237, 307
BstV2I GAAGAC 1 cut(s) 389
BstX2I RGATCY 2 cut(s) 95, 512
BstYI RGATCY 2 cut(s) 95, 512
BsuRI GGCC 2 cut(s) 414, 580
BtgZI GCGATG 1 cut(s) 599
BtsCI GGATG 3 cut(s) 59, 252, 322
BtsIMutI CAGTG 2 cut(s) 12, 174
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 1 cut(s) 412
CaiI CAGNNNCTG 1 cut(s) 590
CciI TCATGA 1 cut(s) 120
CfoI GCGC 1 cut(s) 490
CviAII CATG 2 cut(s) 121, 392
CviJI RGCY 7 cut(s) 116, 171, 331, 410, 414, 580, 594
CviKI_1 RGCY 7 cut(s) 116, 171, 331, 410, 414, 580, 594
DdeI CTNAG 1 cut(s) 303
DpnI GATC 3 cut(s) 97, 125, 514
DpnII GATC 3 cut(s) 95, 123, 512
Eam1104I CTCTTC 1 cut(s) 601
EarI CTCTTC 1 cut(s) 601
Eco91I GGTNACC 1 cut(s) 158
EcoO65I GGTNACC 1 cut(s) 158
FaeI CATG 2 cut(s) 124, 395
FatI CATG 2 cut(s) 120, 391
Fnu4HI GCNGC 2 cut(s) 251, 321
FokI GGATG 3 cut(s) 46, 259, 329
Fsp4HI GCNGC 2 cut(s) 251, 321
GlaI GCGC 1 cut(s) 489
GluI GCNGC 2 cut(s) 251, 321
HaeIII GGCC 2 cut(s) 414, 580
HapII CCGG 1 cut(s) 516
HhaI GCGC 1 cut(s) 490
Hin1II CATG 2 cut(s) 124, 395
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HinfI GANTC 3 cut(s) 56, 81, 188
HpaII CCGG 1 cut(s) 516
Hpy188I TCNGA 2 cut(s) 7, 360
Hpy188III TCNNGA 2 cut(s) 121, 482
Hpy99I CGWCG 1 cut(s) 483
HpyCH4III ACNGT 2 cut(s) 16, 46
HpyCH4V TGCA 2 cut(s) 323, 629
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 2 cut(s) 124, 395
HspAI GCGC 1 cut(s) 488
Kzo9I GATC 3 cut(s) 95, 123, 512
LguI GCTCTTC 1 cut(s) 601
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 9 cut(s) 153, 176, 198, 313, 396, 529, 549, 570, 576
Lsp1109I GCAGC 2 cut(s) 237, 307
LweI GCATC 4 cut(s) 169, 217, 237, 307
MaeIII GTNAC 3 cut(s) 10, 40, 158
MalI GATC 3 cut(s) 97, 125, 514
MboI GATC 3 cut(s) 95, 123, 512
MboII GAAGA 5 cut(s) 12, 15, 18, 394, 588
MflI RGATCY 2 cut(s) 95, 512
MluCI AATT 8 cut(s) 86, 152, 203, 219, 268, 309, 335, 498
MmeI TCCRAC 2 cut(s) 123, 224
MnlI CCTC 2 cut(s) 478, 621
MslI CAYNNNNRTG 1 cut(s) 396
MspI CCGG 1 cut(s) 516
NdeII GATC 3 cut(s) 95, 123, 512
NlaIII CATG 2 cut(s) 124, 395
NlaIV GGNNCC 4 cut(s) 97, 514, 520, 534
NmeAIII GCCGAG 1 cut(s) 556
NmuCI GTSAC 2 cut(s) 10, 40
PagI TCATGA 1 cut(s) 120
PciSI GCTCTTC 1 cut(s) 601
PfeI GAWTC 3 cut(s) 56, 81, 188
PkrI GCNGC 2 cut(s) 252, 322
PspEI GGTNACC 1 cut(s) 158
PspN4I GGNNCC 4 cut(s) 97, 514, 520, 534
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 2 cut(s) 95, 512
RseI CAYNNNNRTG 1 cut(s) 396
SapI GCTCTTC 1 cut(s) 601
SatI GCNGC 2 cut(s) 251, 321
Sau3AI GATC 3 cut(s) 95, 123, 512
SetI ASST 5 cut(s) 72, 76, 165, 298, 538
SfaNI GCATC 4 cut(s) 169, 217, 237, 307
SfcI CTRYAG 2 cut(s) 258, 582
SmiMI CAYNNNNRTG 1 cut(s) 396
Sse9I AATT 8 cut(s) 86, 152, 203, 219, 268, 309, 335, 498
TaaI ACNGT 2 cut(s) 16, 46
TaqI TCGA 3 cut(s) 126, 456, 481
TasI AATT 8 cut(s) 86, 152, 203, 219, 268, 309, 335, 498
TfiI GAWTC 3 cut(s) 56, 81, 188
TscAI CASTG 2 cut(s) 19, 181
TseFI GTSAC 2 cut(s) 10, 40
TseI GCWGC 2 cut(s) 250, 320
Tsp45I GTSAC 2 cut(s) 10, 40
TspDTI ATGAA 5 cut(s) 38, 109, 275, 377, 395
TspRI CASTG 2 cut(s) 19, 181
XapI RAATTY 2 cut(s) 203, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.