Rmu_sc0000303.1_g000035
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000303.1
OG0000146
Physical Location & Seq
Reverse (-)
210777 .. 211109
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000303.1_g000035.1.cds

Sequence Viewer

Length: 333 bp
atggagctcctctttatggttattacagcaatatatatgaagaagataaggcaggaacttaacatattggatcctctccagctcaaggatgcaaattctatcacctacatggctagtagggtcactaagcaccgtgtctatttctttttggccaggctagaccctcaccttgatggagtccggagtagaatcctaaacaccaagccattgccttccatagaagaggcttattctcaagtcaatgctgagcataatagactccaaaacatgatgacaggactcgccctaaatttcaccctaaaatccgaagtggccctgcagggcttaccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.66

Weight (kDa)

9.39

Isoelectric Point (pI)

55.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 180
AclWI GGATC 2 cut(s) 65, 78
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 2 cut(s) 94, 289
AfiI CCNNNNNNNGG 2 cut(s) 16, 85
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 2 cut(s) 7, 82
AluI AGCT 2 cut(s) 7, 82
Alw21I GWGCWC 1 cut(s) 9
AlwI GGATC 2 cut(s) 65, 78
Aor13HI TCCGGA 1 cut(s) 180
AoxI GGCC 2 cut(s) 150, 312
ApoI RAATTY 2 cut(s) 94, 289
AspS9I GGNCC 1 cut(s) 313
AsuHPI GGTGA 3 cut(s) 94, 158, 286
BalI TGGCCA 1 cut(s) 152
BamHI GGATCC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 9
BccI CCATC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 154
BfaI CTAG 2 cut(s) 114, 158
BfmI CTRYAG 1 cut(s) 317
BlpI GCTNAGC 1 cut(s) 246
Bme1390I CCNGG 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 79
BpmI CTGGAG 1 cut(s) 62
Bpu1102I GCTNAGC 1 cut(s) 246
BpuEI CTTGAG 2 cut(s) 68, 219
BsaWI WCCGGW 1 cut(s) 180
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 85
Bse3DI GCAATG 1 cut(s) 206
BseAI TCCGGA 1 cut(s) 180
BseBI CCWGG 1 cut(s) 154
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 2 cut(s) 16, 85
BseMI GCAATG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 237
BshFI GGCC 2 cut(s) 152, 314
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 16, 85
BsnI GGCC 2 cut(s) 152, 314
Bsp1286I GDGCHC 1 cut(s) 9
Bsp13I TCCGGA 1 cut(s) 180
Bsp143I GATC 1 cut(s) 70
Bsp1720I GCTNAGC 1 cut(s) 246
BspANI GGCC 2 cut(s) 152, 314
BspCNI CTCAG 1 cut(s) 238
BspEI TCCGGA 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 72
BspMAI CTGCAG 1 cut(s) 321
BspPI GGATC 2 cut(s) 65, 78
BsrDI GCAATG 1 cut(s) 206
BssMI GATC 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 1 cut(s) 216
BstDEI CTNAG 3 cut(s) 126, 246, 330
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 152
BstSFI CTRYAG 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 2 cut(s) 152, 314
BtsCI GGATG 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 313
CviAII CATG 2 cut(s) 109, 268
CviJI RGCY 9 cut(s) 7, 82, 113, 152, 157, 205, 227, 314, 324
CviKI_1 RGCY 9 cut(s) 7, 82, 113, 152, 157, 205, 227, 314, 324
DdeI CTNAG 3 cut(s) 126, 246, 330
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Ecl136II GAGCTC 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 9
Eco53kI GAGCTC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 9
FaeI CATG 2 cut(s) 112, 271
FaiI YATR 9 cut(s) 17, 34, 36, 38, 65, 110, 218, 252, 269
FatI CATG 2 cut(s) 108, 267
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 9
FspBI CTAG 2 cut(s) 114, 158
GsuI CTGGAG 1 cut(s) 62
HaeIII GGCC 2 cut(s) 152, 314
HapII CCGG 1 cut(s) 181
Hin1II CATG 2 cut(s) 112, 271
HinfI GANTC 4 cut(s) 177, 189, 258, 279
HpaII CCGG 1 cut(s) 181
HphI GGTGA 3 cut(s) 94, 158, 286
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 222
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 2 cut(s) 92, 319
HpyF3I CTNAG 3 cut(s) 126, 246, 330
Hsp92II CATG 2 cut(s) 112, 271
Kpn2I TCCGGA 1 cut(s) 180
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 2 cut(s) 4, 12
LpnPI CCDG 8 cut(s) 38, 92, 139, 166, 194, 261, 305, 329
LweI GCATC 1 cut(s) 79
MaeI CTAG 2 cut(s) 114, 158
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 3 cut(s) 52, 55, 233
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 2 cut(s) 94, 289
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 3 cut(s) 186, 252, 273
MnlI CCTC 4 cut(s) 20, 84, 174, 217
Mox20I TGGCCA 1 cut(s) 152
MroI TCCGGA 1 cut(s) 180
MscI TGGCCA 1 cut(s) 152
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 2 cut(s) 107, 171
Msp20I TGGCCA 1 cut(s) 152
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 154
NdeII GATC 1 cut(s) 70
NlaIII CATG 2 cut(s) 112, 271
NlaIV GGNNCC 1 cut(s) 72
NmuCI GTSAC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 189
PleI GAGTC 3 cut(s) 185, 252, 273
PpsI GAGTC 3 cut(s) 185, 252, 273
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 313
PstI CTGCAG 1 cut(s) 321
PsuI RGATCY 1 cut(s) 70
RseI CAYNNNNRTG 2 cut(s) 107, 171
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 1 cut(s) 60
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 313
SbfI CCTGCAGG 1 cut(s) 321
SchI GAGTC 3 cut(s) 186, 252, 273
ScrFI CCNGG 1 cut(s) 154
SdaI CCTGCAGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 9
SetI ASST 5 cut(s) 9, 84, 107, 171, 331
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 317
SmiMI CAYNNNNRTG 2 cut(s) 107, 171
SmlI CTYRAG 2 cut(s) 83, 234
SmoI CTYRAG 2 cut(s) 83, 234
Sse8387I CCTGCAGG 1 cut(s) 321
Sse9I AATT 2 cut(s) 94, 289
SspMI CTAG 2 cut(s) 114, 158
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 134
TasI AATT 2 cut(s) 94, 289
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TseFI GTSAC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 53
XapI RAATTY 2 cut(s) 94, 289
XspI CTAG 2 cut(s) 114, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.