Prupe.4G150800_v2.0.a1

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000146
Physical Location & Seq
Reverse (-)
8627066 .. 8627751
686 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G150800.1

Sequence Viewer

Length: 342 bp
ATGAAGACGGAGGTTGACAAGAGTGAACCCGCTGCCATGGCAACAAAGGCCCGTGGGTCACCTTATGGGCCTAACCGAGAAGGCCAGCCAAGCCGAGATCGTCCTCAAGGTAAGTGCCCACACTGTGGCATGCCAGGACACTCCAAGAGTCGCTGTTTTGAGCTGATTGGATATCCCGAGAATTGGGATAGGACCCGTGATCCTCGGTGCAACAAGTCTCGAGCCTCTGTTGTAGAAACCAAGAATGATTCGGACCAAATCGCAGACAAGGCATCTGCCATGATTGCTGCGGCAGGTAGTGATGGACATCCGGACGCGGAAGACGATTGGTTATGGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.48

Weight (kDa)

6.28

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 125
AccII CGCG 1 cut(s) 317
AccIII TCCGGA 1 cut(s) 310
AciI CCGC 3 cut(s) 30, 290, 317
AclWI GGATC 1 cut(s) 194
AdeI CACNNNGTG 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 125, 183
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 1 cut(s) 194
Ama87I CYCGRG 2 cut(s) 176, 219
Aor13HI TCCGGA 1 cut(s) 310
AoxI GGCC 3 cut(s) 48, 68, 82
ApeKI GCWGC 2 cut(s) 32, 287
AspS9I GGNCC 4 cut(s) 49, 68, 192, 253
AsuHPI GGTGA 1 cut(s) 51
AvaI CYCGRG 2 cut(s) 176, 219
AvaII GGWCC 2 cut(s) 192, 253
BaeGI GKGCMC 1 cut(s) 119
BbsI GAAGAC 2 cut(s) 11, 327
BbvI GCAGC 2 cut(s) 19, 274
BccI CCATC 1 cut(s) 296
BciT130I CCWGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 222
BfuAI ACCTGC 1 cut(s) 284
BisI GCNGC 3 cut(s) 33, 288, 291
BlsI GCNGC 3 cut(s) 34, 289, 292
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 2 cut(s) 192, 253
BmeT110I CYCGRG 2 cut(s) 176, 219
BmgT120I GGNCC 4 cut(s) 49, 68, 192, 253
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 1 cut(s) 281
BpiI GAAGAC 2 cut(s) 11, 327
BpuEI CTTGAG 1 cut(s) 90
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 3 cut(s) 36, 52, 203
BsaWI WCCGGW 1 cut(s) 310
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 183
Bse8I GATNNNNATC 1 cut(s) 306
BseAI TCCGGA 1 cut(s) 310
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 3 cut(s) 36, 52, 203
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 2 cut(s) 125, 183
BseSI GKGCMC 1 cut(s) 119
BseXI GCAGC 2 cut(s) 19, 274
Bsh1236I CGCG 1 cut(s) 317
BshFI GGCC 3 cut(s) 50, 70, 84
BsiHKCI CYCGRG 2 cut(s) 176, 219
BsiSI CCGG 1 cut(s) 311
BslI CCNNNNNNNGG 2 cut(s) 125, 183
BsmAI GTCTC 1 cut(s) 222
BsnI GGCC 3 cut(s) 50, 70, 84
BsoBI CYCGRG 2 cut(s) 176, 219
Bsp1286I GDGCHC 1 cut(s) 119
Bsp13I TCCGGA 1 cut(s) 310
Bsp143I GATC 2 cut(s) 97, 199
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 3 cut(s) 30, 290, 317
BspANI GGCC 3 cut(s) 50, 70, 84
BspEI TCCGGA 1 cut(s) 310
BspFNI CGCG 1 cut(s) 317
BspLI GGNNCC 1 cut(s) 194
BspMI ACCTGC 1 cut(s) 284
BspPI GGATC 1 cut(s) 194
BssECI CCNNGG 3 cut(s) 36, 52, 203
BssMI GATC 2 cut(s) 97, 199
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 86, 131
BstDSI CCRYGG 2 cut(s) 36, 52
BstEII GGTNACC 1 cut(s) 57
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 1 cut(s) 317
BstKTI GATC 2 cut(s) 100, 202
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 2 cut(s) 97, 199
BstMWI GCNNNNNNNGC 5 cut(s) 38, 47, 90, 269, 284
BstNI CCWGG 1 cut(s) 135
BstNSI RCATGY 1 cut(s) 133
BstPI GGTNACC 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 133
BstSLI GKGCMC 1 cut(s) 119
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 2 cut(s) 19, 274
BstV2I GAAGAC 2 cut(s) 11, 327
BsuRI GGCC 3 cut(s) 50, 70, 84
BtgI CCRYGG 2 cut(s) 36, 52
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 121
BveI ACCTGC 1 cut(s) 284
Cac8I GCNNGC 2 cut(s) 86, 131
Cfr13I GGNCC 4 cut(s) 49, 68, 192, 253
CseI GACGC 1 cut(s) 323
CviAII CATG 3 cut(s) 37, 130, 280
CviJI RGCY 7 cut(s) 50, 70, 84, 88, 93, 163, 224
CviKI_1 RGCY 7 cut(s) 50, 70, 84, 88, 93, 163, 224
DpnI GATC 2 cut(s) 99, 201
DpnII GATC 2 cut(s) 97, 199
DraIII CACNNNGTG 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 36
Eco32I GATATC 1 cut(s) 173
Eco47I GGWCC 2 cut(s) 192, 253
Eco88I CYCGRG 2 cut(s) 176, 219
Eco91I GGTNACC 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 192
EcoO65I GGTNACC 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 133
EcoRV GATATC 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 3 cut(s) 40, 133, 283
FaiI YATR 5 cut(s) 38, 66, 131, 281, 334
FatI CATG 3 cut(s) 36, 129, 279
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 3 cut(s) 33, 288, 291
FokI GGATG 1 cut(s) 294
Fsp4HI GCNGC 3 cut(s) 33, 288, 291
GluI GCNGC 3 cut(s) 33, 288, 291
HaeIII GGCC 3 cut(s) 50, 70, 84
HapII CCGG 1 cut(s) 311
HgaI GACGC 1 cut(s) 323
Hin1II CATG 3 cut(s) 40, 133, 283
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 2 cut(s) 148, 248
HpaII CCGG 1 cut(s) 311
HphI GGTGA 1 cut(s) 51
Hpy166II GTNNAC 2 cut(s) 16, 26
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 3 cut(s) 176, 219, 311
Hpy8I GTNNAC 2 cut(s) 16, 26
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 47, 90, 269, 284
Hsp92II CATG 3 cut(s) 40, 133, 283
Kpn2I TCCGGA 1 cut(s) 310
Kzo9I GATC 2 cut(s) 97, 199
LpnPI CCDG 5 cut(s) 98, 120, 147, 279, 324
Lsp1109I GCAGC 2 cut(s) 19, 274
LweI GCATC 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 57
MalI GATC 2 cut(s) 99, 201
MboI GATC 2 cut(s) 97, 199
MboII GAAGA 2 cut(s) 16, 332
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 1 cut(s) 181
MlyI GAGTC 1 cut(s) 157
MnlI CCTC 4 cut(s) 4, 114, 213, 235
MroI TCCGGA 1 cut(s) 310
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 5 cut(s) 38, 47, 90, 269, 284
NcoI CCATGG 1 cut(s) 36
NdeII GATC 2 cut(s) 97, 199
NlaIII CATG 3 cut(s) 40, 133, 283
NlaIV GGNNCC 1 cut(s) 194
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 57
NspI RCATGY 1 cut(s) 133
PaeI GCATGC 1 cut(s) 133
PaeR7I CTCGAG 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PfeI GAWTC 1 cut(s) 248
PflMI CCANNNNNTGG 1 cut(s) 125
PkrI GCNGC 3 cut(s) 34, 289, 292
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
PpuMI RGGWCCY 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 133
PspEI GGTNACC 1 cut(s) 57
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 4 cut(s) 49, 68, 192, 253
PspPPI RGGWCCY 1 cut(s) 192
SatI GCNGC 3 cut(s) 33, 288, 291
Sau3AI GATC 2 cut(s) 97, 199
Sau96I GGNCC 4 cut(s) 49, 68, 192, 253
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 1 cut(s) 119
SetI ASST 5 cut(s) 15, 64, 112, 165, 298
SfaNI GCATC 1 cut(s) 281
Sfr274I CTCGAG 1 cut(s) 219
SinI GGWCC 2 cut(s) 192, 253
SlaI CTCGAG 1 cut(s) 219
SmlI CTYRAG 2 cut(s) 105, 219
SmoI CTYRAG 2 cut(s) 105, 219
SphI GCATGC 1 cut(s) 133
Sse9I AATT 1 cut(s) 181
SsiI CCGC 3 cut(s) 30, 290, 317
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 125
TaqI TCGA 1 cut(s) 220
TasI AATT 1 cut(s) 181
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 1 cut(s) 248
TscAI CASTG 1 cut(s) 128
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 2 cut(s) 32, 287
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 128
Van91I CCANNNNNTGG 1 cut(s) 125
VpaK11BI GGWCC 2 cut(s) 192, 253
XceI RCATGY 1 cut(s) 133
XhoI CTCGAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.