Rmu_sc0005167.1_g000036
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005167.1
Physical Location & Seq
Forward (+)
181381 .. 181860
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005167.1_g000036.1.cds

Sequence Viewer

Length: 378 bp
atggtggatttgactcttactgacgggaatattggaggatctcagaatggaggggtgaactctatgacccgtgaggggattggaaagtggagttatgttaccggtagtgcagcaagacctgctgcaggaccaaaagccgatgaatgggatacggcaaatactaatgtgatgggaattcttctcaaggctatgactccggaggtaatgagattatttgctaactatgattctcccaaagcaatttgggattctgttgctgctacatattatgatgggagtgactttgctcgtgttcatgaattgaatgtcaaagctttcaaaataactcagagtggacagcctgttgcaaccttttatgcaaatttgaagacaatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

125

Amino Acids

13.44

Weight (kDa)

5.7

Isoelectric Point (pI)

29.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 127
AccIII TCCGGA 1 cut(s) 196
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 2 cut(s) 174, 361
AfiI CCNNNNNNNGG 3 cut(s) 75, 125, 144
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 3 cut(s) 304, 319, 367
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
AlwI GGATC 1 cut(s) 46
Aor13HI TCCGGA 1 cut(s) 196
ApeKI GCWGC 3 cut(s) 110, 122, 257
ApoI RAATTY 2 cut(s) 174, 361
AsiGI ACCGGT 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 128
BauI CACGAG 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 374
BbvI GCAGC 3 cut(s) 109, 122, 244
BccI CCATC 2 cut(s) 163, 266
BceAI ACGGC 1 cut(s) 168
BciVI GTATCC 1 cut(s) 142
BfmI CTRYAG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 127
BfuI GTATCC 1 cut(s) 142
BisI GCNGC 3 cut(s) 111, 123, 258
BlsI GCNGC 3 cut(s) 112, 124, 259
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BpiI GAAGAC 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 167
BsaWI WCCGGW 2 cut(s) 101, 196
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 125, 144
Bse118I RCCGGY 1 cut(s) 101
BseAI TCCGGA 1 cut(s) 196
BseLI CCNNNNNNNGG 3 cut(s) 75, 125, 144
BseMII CTCAG 2 cut(s) 56, 341
BseXI GCAGC 3 cut(s) 109, 122, 244
BsgI GTGCAG 1 cut(s) 129
BshTI ACCGGT 1 cut(s) 101
BsiSI CCGG 2 cut(s) 102, 197
BslI CCNNNNNNNGG 3 cut(s) 75, 125, 144
Bsp13I TCCGGA 1 cut(s) 196
Bsp143I GATC 1 cut(s) 38
BspCNI CTCAG 2 cut(s) 55, 340
BspEI TCCGGA 1 cut(s) 196
BspHI TCATGA 1 cut(s) 295
BspMAI CTGCAG 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 127
BspPI GGATC 1 cut(s) 46
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssMI GATC 1 cut(s) 38
BssSI CACGAG 1 cut(s) 288
Bst2BI CACGAG 1 cut(s) 288
BstAPI GCANNNNNTGC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 42, 327
BstENI CCTNNNNNAGG 1 cut(s) 123
BstKTI GATC 1 cut(s) 41
BstMBI GATC 1 cut(s) 38
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 3 cut(s) 109, 122, 244
BstV2I GAAGAC 1 cut(s) 374
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuI GTATCC 1 cut(s) 142
BveI ACCTGC 1 cut(s) 127
CciI TCATGA 1 cut(s) 295
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 128
CspAI ACCGGT 1 cut(s) 101
CviAII CATG 1 cut(s) 296
CviJI RGCY 4 cut(s) 137, 188, 314, 340
CviKI_1 RGCY 4 cut(s) 137, 188, 314, 340
DdeI CTNAG 2 cut(s) 42, 327
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 128
EcoNI CCTNNNNNAGG 1 cut(s) 123
EcoRI GAATTC 1 cut(s) 174
FaeI CATG 1 cut(s) 299
FaiI YATR 8 cut(s) 65, 96, 191, 225, 265, 270, 297, 357
FatI CATG 1 cut(s) 295
Fnu4HI GCNGC 3 cut(s) 111, 123, 258
Fsp4HI GCNGC 3 cut(s) 111, 123, 258
GluI GCNGC 3 cut(s) 111, 123, 258
HapII CCGG 2 cut(s) 102, 197
Hin1II CATG 1 cut(s) 299
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 4 cut(s) 13, 193, 227, 248
HpaII CCGG 2 cut(s) 102, 197
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 2 cut(s) 58, 335
Hpy188I TCNGA 2 cut(s) 45, 330
Hpy188III TCNNGA 2 cut(s) 197, 296
Hpy8I GTNNAC 2 cut(s) 58, 335
HpyCH4V TGCA 4 cut(s) 110, 125, 347, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 2 cut(s) 42, 327
Hsp92II CATG 1 cut(s) 299
Kpn2I TCCGGA 1 cut(s) 196
Kzo9I GATC 1 cut(s) 38
LpnPI CCDG 5 cut(s) 111, 115, 132, 210, 354
Lsp1109I GCAGC 3 cut(s) 109, 122, 244
MaeIII GTNAC 2 cut(s) 97, 278
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 1 cut(s) 170
MflI RGATCY 1 cut(s) 38
MluCI AATT 5 cut(s) 174, 240, 299, 361, 372
MlyI GAGTC 2 cut(s) 7, 187
MnlI CCTC 4 cut(s) 29, 44, 67, 193
MroI TCCGGA 1 cut(s) 196
MspI CCGG 2 cut(s) 102, 197
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 1 cut(s) 38
NlaIII CATG 1 cut(s) 299
NmuCI GTSAC 1 cut(s) 278
PagI TCATGA 1 cut(s) 295
PfeI GAWTC 2 cut(s) 227, 248
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 3 cut(s) 112, 124, 259
PleI GAGTC 2 cut(s) 7, 187
PpsI GAGTC 2 cut(s) 7, 187
PspPI GGNCC 1 cut(s) 128
PstI CTGCAG 1 cut(s) 127
PsuI RGATCY 1 cut(s) 38
SatI GCNGC 3 cut(s) 111, 123, 258
Sau3AI GATC 1 cut(s) 38
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 2 cut(s) 7, 187
SetI ASST 4 cut(s) 121, 204, 316, 353
SfcI CTRYAG 1 cut(s) 123
SinI GGWCC 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 5 cut(s) 174, 240, 299, 361, 372
SspI AATATT 1 cut(s) 31
TasI AATT 5 cut(s) 174, 240, 299, 361, 372
TfiI GAWTC 2 cut(s) 227, 248
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 3 cut(s) 110, 122, 257
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 3 cut(s) 156, 284, 312
VpaK11BI GGWCC 1 cut(s) 128
XagI CCTNNNNNAGG 1 cut(s) 123
XapI RAATTY 2 cut(s) 174, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.