Rmu_sc0014824.1_g000001
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014824.1
OG0000146
Physical Location & Seq
Reverse (-)
2 .. 468
467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014824.1_g000001.1.cds

Sequence Viewer

Length: 467 bp
atgttcaaagctgcaggaatgcaacagaatggacaaccagtgtcagtattttttaccaagctgaagaatgtatgggctgaaattgatcagaagcgtccttgcaagatcaagaatcaggaagatcttgtgtggtaccagaaggagaaggagctagaaagggttcatgtcttcctaagagggcttgatgagaagcatagcagtgccaagggagaattgctcagaatgacagaccctcctagtttgaacacagcttttacatacatccgcaaggatgagtctcagcaggaaagtgtcaaacatgcacaggttgaagtatctagcctagccattcaggccaagtcacctgcaccttttcttcagcaacagagttcatccccacttcatcatcaaggtttcccgcaaggcttcaccaaccgtcctcgtcctcaatgctcttattgcaacgatcttgggcatgttcgggagac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

156

Amino Acids

17.9

Weight (kDa)

9.01

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 352
Acc36I ACCTGC 1 cut(s) 352
Acc65I GGTACC 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 132
AciI CCGC 2 cut(s) 265, 398
AcuI CTGAAG 2 cut(s) 83, 341
AfaI GTAC 1 cut(s) 134
AgsI TTSAA 3 cut(s) 7, 244, 311
AluBI AGCT 4 cut(s) 11, 61, 151, 251
AluI AGCT 4 cut(s) 11, 61, 151, 251
Alw26I GTCTC 2 cut(s) 282, 458
AoxI GGCC 1 cut(s) 333
ApeKI GCWGC 1 cut(s) 11
Asp700I GAANNNNTTC 1 cut(s) 159
Asp718I GGTACC 1 cut(s) 132
AsuHPI GGTGA 2 cut(s) 333, 400
BanI GGYRCC 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 160
BclI TGATCA 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 282, 458
BfaI CTAG 4 cut(s) 152, 237, 318, 323
BfmI CTRYAG 1 cut(s) 12
BfuAI ACCTGC 1 cut(s) 352
BglI GCCNNNNNGGC 1 cut(s) 332
BglII AGATCT 1 cut(s) 121
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 134
BpiI GAAGAC 1 cut(s) 160
BplI GAGNNNNNCTC 2 cut(s) 201, 233
BsaJI CCNNGG 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bse1I ACTGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 3 cut(s) 261, 277, 371
BseMII CTCAG 2 cut(s) 232, 293
BseNI ACTGG 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 330
BshFI GGCC 1 cut(s) 335
BshNI GGYRCC 1 cut(s) 132
BsmAI GTCTC 2 cut(s) 282, 458
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 1 cut(s) 335
Bsp143I GATC 4 cut(s) 85, 105, 121, 445
BspACI CCGC 2 cut(s) 265, 398
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 2 cut(s) 231, 292
BspLI GGNNCC 1 cut(s) 134
BspMAI CTGCAG 1 cut(s) 16
BspMI ACCTGC 1 cut(s) 352
BspT107I GGYRCC 1 cut(s) 132
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 4 cut(s) 85, 105, 121, 445
BssT1I CCWWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 416
BstDEI CTNAG 3 cut(s) 173, 218, 279
BstF5I GGATG 3 cut(s) 261, 277, 371
BstKTI GATC 4 cut(s) 88, 108, 124, 448
BstMAI GTCTC 2 cut(s) 282, 458
BstMBI GATC 4 cut(s) 85, 105, 121, 445
BstMWI GCNNNNNNNGC 2 cut(s) 332, 438
BstNSI RCATGY 2 cut(s) 302, 458
BstSFI CTRYAG 1 cut(s) 12
BstV2I GAAGAC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 1 cut(s) 335
BtsCI GGATG 3 cut(s) 261, 277, 371
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 2 cut(s) 45, 205
BveI ACCTGC 1 cut(s) 352
CseI GACGC 1 cut(s) 83
Csp6I GTAC 1 cut(s) 133
CviAII CATG 3 cut(s) 164, 299, 455
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 3 cut(s) 173, 218, 279
DpnI GATC 4 cut(s) 87, 107, 123, 447
DpnII GATC 4 cut(s) 85, 105, 121, 445
Eco130I CCWWGG 1 cut(s) 204
Eco57I CTGAAG 2 cut(s) 83, 341
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 3 cut(s) 167, 302, 458
FaiI YATR 6 cut(s) 73, 165, 195, 259, 300, 456
FatI CATG 3 cut(s) 163, 298, 454
FauI CCCGC 1 cut(s) 405
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 3 cut(s) 248, 284, 358
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 4 cut(s) 152, 237, 318, 323
GluI GCNGC 1 cut(s) 12
HaeIII GGCC 1 cut(s) 335
HgaI GACGC 1 cut(s) 83
Hin1II CATG 3 cut(s) 167, 302, 458
HinfI GANTC 2 cut(s) 112, 275
HphI GGTGA 2 cut(s) 333, 400
Hpy188I TCNGA 2 cut(s) 90, 221
Hpy188III TCNNGA 3 cut(s) 109, 116, 461
HpyAV CCTTC 2 cut(s) 133, 139
HpyCH4III ACNGT 1 cut(s) 416
HpyCH4V TGCA 6 cut(s) 14, 22, 102, 302, 347, 441
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 438
HpyF3I CTNAG 3 cut(s) 173, 218, 279
Hsp92II CATG 3 cut(s) 167, 302, 458
KpnI GGTACC 1 cut(s) 136
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 4 cut(s) 85, 105, 121, 445
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 7 cut(s) 51, 101, 149, 269, 290, 317, 357
MaeI CTAG 4 cut(s) 152, 237, 318, 323
MaeIII GTNAC 1 cut(s) 339
MalI GATC 4 cut(s) 87, 107, 123, 447
MboI GATC 4 cut(s) 85, 105, 121, 445
MboII GAAGA 4 cut(s) 76, 131, 160, 347
MflI RGATCY 1 cut(s) 121
MluCI AATT 2 cut(s) 81, 212
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 4 cut(s) 170, 243, 429, 435
MroXI GAANNNNTTC 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 198
Mva1269I GAATGC 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 332, 438
NdeII GATC 4 cut(s) 85, 105, 121, 445
NlaIII CATG 3 cut(s) 167, 302, 458
NlaIV GGNNCC 1 cut(s) 134
NmuCI GTSAC 1 cut(s) 339
NspI RCATGY 2 cut(s) 302, 458
PaqCI CACCTGC 1 cut(s) 352
PctI GAATGC 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 134
PstI CTGCAG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 198
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 4 cut(s) 85, 105, 121, 445
SchI GAGTC 1 cut(s) 284
SetI ASST 8 cut(s) 13, 63, 153, 253, 309, 346, 352, 394
SfcI CTRYAG 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 2 cut(s) 81, 212
SsiI CCGC 2 cut(s) 265, 398
SspMI CTAG 4 cut(s) 152, 237, 318, 323
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 416
TasI AATT 2 cut(s) 81, 212
TfiI GAWTC 1 cut(s) 112
TscAI CASTG 2 cut(s) 45, 205
TseFI GTSAC 1 cut(s) 339
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 339
TspDTI ATGAA 3 cut(s) 152, 360, 371
TspRI CASTG 2 cut(s) 45, 205
XceI RCATGY 2 cut(s) 302, 458
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 4 cut(s) 152, 237, 318, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.