Rmu_sc0000982.1_g000102
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000982.1
OG0000146
Physical Location & Seq
Reverse (-)
358534 .. 359034
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000982.1_g000102.1.cds

Sequence Viewer

Length: 423 bp
atgtctatttatctccgtgggatacacaaaatgaggcatgtgactggaacaatcaaggctcctagtgaagatgataaggaggcctatgctaagtgggaagatgatgatgggtttgtaatatcgattctatttcgagccatgactgatgatgtgctacagatggttcatgaattgatgtacaaagctgcaggaatgcaactgaacgagcaactagtgtcagtgttttttaccaagctgaagaatgtatgggctgatattgataagaagtgtccttgcaagatcaagaaccaggaggatattgcatggtaccagaaagaaaaggaacttgagcgggttcatgcattcttgcgaggacttgatgccaaacataacagtgccaaaggagaattgcttagaatgccagatcttcctagcttgacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

140

Amino Acids

16.23

Weight (kDa)

6.51

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 306
AccB1I GGYRCC 1 cut(s) 306
AccBSI CCGCTC 1 cut(s) 331
AciI CCGC 1 cut(s) 331
AcuI CTGAAG 1 cut(s) 257
AfaI GTAC 2 cut(s) 179, 308
AhlI ACTAGT 1 cut(s) 211
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 3 cut(s) 185, 235, 414
AluI AGCT 3 cut(s) 185, 235, 414
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 185
Asp718I GGTACC 1 cut(s) 306
BanI GGYRCC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 172
BccI CCATC 2 cut(s) 101, 154
BciT130I CCWGG 1 cut(s) 290
BciVI GTATCC 1 cut(s) 15
BcuI ACTAGT 1 cut(s) 211
BfaI CTAG 3 cut(s) 63, 212, 411
BfmI CTRYAG 2 cut(s) 155, 186
BfuI GTATCC 1 cut(s) 15
BglII AGATCT 1 cut(s) 403
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 290
BmiI GGNNCC 2 cut(s) 60, 308
BmrFI CCNGG 1 cut(s) 290
BmsI GCATC 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 347
Bsa29I ATCGAT 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 290
BseCI ATCGAT 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 16
BseNI ACTGG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 172
BshFI GGCC 1 cut(s) 83
BshNI GGYRCC 1 cut(s) 306
BshVI ATCGAT 1 cut(s) 122
BsmI GAATGC 3 cut(s) 198, 341, 402
BsnI GGCC 1 cut(s) 83
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 2 cut(s) 279, 403
BspACI CCGC 1 cut(s) 331
BspANI GGCC 1 cut(s) 83
BspDI ATCGAT 1 cut(s) 122
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 2 cut(s) 60, 308
BspMAI CTGCAG 1 cut(s) 190
BspT107I GGYRCC 1 cut(s) 306
BsrBI CCGCTC 1 cut(s) 331
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 2 cut(s) 279, 403
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 374
BstAUI TGTACA 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 90, 392
BstDSI CCRYGG 1 cut(s) 16
BstKTI GATC 2 cut(s) 282, 406
BstMBI GATC 2 cut(s) 279, 403
BstMWI GCNNNNNNNGC 1 cut(s) 397
BstNI CCWGG 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 288
BstSFI CTRYAG 2 cut(s) 155, 186
BstV1I GCAGC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
Bsu15I ATCGAT 1 cut(s) 122
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 83
BsuTUI ATCGAT 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 16
BtsIMutI CAGTG 2 cut(s) 225, 379
CciI TCATGA 1 cut(s) 166
ClaI ATCGAT 1 cut(s) 122
Csp6I GTAC 2 cut(s) 178, 307
CviAII CATG 5 cut(s) 38, 139, 167, 303, 338
CviJI RGCY 7 cut(s) 59, 83, 137, 185, 235, 251, 414
CviKI_1 RGCY 7 cut(s) 59, 83, 137, 185, 235, 251, 414
CviQI GTAC 2 cut(s) 178, 307
DdeI CTNAG 2 cut(s) 90, 392
DpnI GATC 2 cut(s) 281, 405
DpnII GATC 2 cut(s) 279, 403
Eco147I AGGCCT 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 288
EcoT22I ATGCAT 1 cut(s) 343
FaeI CATG 5 cut(s) 41, 142, 170, 306, 341
FaiI YATR 8 cut(s) 39, 87, 140, 168, 247, 304, 339, 369
FatI CATG 5 cut(s) 37, 138, 166, 302, 337
FauI CCCGC 1 cut(s) 324
Fnu4HI GCNGC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 3 cut(s) 63, 212, 411
GluI GCNGC 1 cut(s) 186
HaeIII GGCC 1 cut(s) 83
Hin1II CATG 5 cut(s) 41, 142, 170, 306, 341
HinfI GANTC 1 cut(s) 124
Hpy188III TCNNGA 2 cut(s) 167, 283
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4V TGCA 5 cut(s) 188, 196, 276, 302, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 397
HpyF3I CTNAG 2 cut(s) 90, 392
Hsp92II CATG 5 cut(s) 41, 142, 170, 306, 341
KpnI GGTACC 1 cut(s) 310
Kzo9I GATC 2 cut(s) 279, 403
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 6 cut(s) 30, 174, 275, 302, 323, 414
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 1 cut(s) 349
MaeI CTAG 3 cut(s) 63, 212, 411
MaeIII GTNAC 1 cut(s) 40
MalI GATC 2 cut(s) 281, 405
MbiI CCGCTC 1 cut(s) 331
MboI GATC 2 cut(s) 279, 403
MboII GAAGA 4 cut(s) 80, 110, 250, 398
MflI RGATCY 1 cut(s) 403
MluCI AATT 2 cut(s) 170, 386
MnlI CCTC 4 cut(s) 27, 73, 286, 344
Mph1103I ATGCAT 1 cut(s) 343
MslI CAYNNNNRTG 1 cut(s) 372
MspR9I CCNGG 1 cut(s) 290
Mva1269I GAATGC 3 cut(s) 198, 341, 402
MvaI CCWGG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 397
NdeII GATC 2 cut(s) 279, 403
NlaIII CATG 5 cut(s) 41, 142, 170, 306, 341
NlaIV GGNNCC 2 cut(s) 60, 308
NmuCI GTSAC 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 343
NspI RCATGY 1 cut(s) 41
PagI TCATGA 1 cut(s) 166
PceI AGGCCT 1 cut(s) 83
PctI GAATGC 3 cut(s) 198, 341, 402
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 60, 308
PstI CTGCAG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 403
RsaI GTAC 2 cut(s) 179, 308
RsaNI GTAC 2 cut(s) 178, 307
RseI CAYNNNNRTG 1 cut(s) 372
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 2 cut(s) 279, 403
ScrFI CCNGG 1 cut(s) 290
SetI ASST 4 cut(s) 187, 237, 416, 422
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 2 cut(s) 155, 186
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
SpeI ACTAGT 1 cut(s) 211
Sse9I AATT 2 cut(s) 170, 386
SseBI AGGCCT 1 cut(s) 83
SsiI CCGC 1 cut(s) 331
SspMI CTAG 3 cut(s) 63, 212, 411
StuI AGGCCT 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 374
TaqI TCGA 2 cut(s) 122, 133
TasI AATT 2 cut(s) 170, 386
TatI WGTACW 1 cut(s) 177
TfiI GAWTC 1 cut(s) 124
TscAI CASTG 2 cut(s) 225, 379
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 3 cut(s) 155, 183, 326
TspGWI ACGGA 1 cut(s) 5
TspRI CASTG 2 cut(s) 225, 379
XceI RCATGY 1 cut(s) 41
XspI CTAG 3 cut(s) 63, 212, 411
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.