FvH4_4g15581
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000146
Physical Location & Seq
Forward (+)
19315118 .. 19315606
489 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15581.t1

Sequence Viewer

Length: 489 bp
ATGGATCTTGCAATCTTTGGTGATCAACCTGAAGTTTCCCGTGAACAATTGATGGCTCTTCAAAACGAGAGCTCAGGCTTTGGAGTGAAACTGGATGGCACAAACTATCCAATATGGCGACAACTTATGAAGATGCATCTTGGCGGTGTGGGCAAGTGGGAATATGTCGCTGGTACTCTCCAACGACCTGAAGAAGTTGGCAAGGCACAAGCTATGTGGGATGCTACAAATTCTAATATGATGGTGCTTCTTCTCAAATCCATGACCAAACCAATCATCCTGTTGTTTTCAAGCTATACGACGCCAAAGGCAATCTGGGATGCAGTCGCAACCACATACTATGATGGGAGTGATTTTGCAAGAGTTCATGAGTTGACCTATCAAGCTTTCGCAACCTCTCAAGCTGGTAAGCCTCTTGCAGAATATTATGCCGGCTTGAAAGCTATCTGGCAAGAGTTGGATGAAAGGACCCCATTCCATGGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

163

Amino Acids

18.19

Weight (kDa)

5.33

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 29 - 64 4.3e-06 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 43 - 154 5.9e-07 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 479
AciI CCGC 1 cut(s) 144
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 229
AcuI CTGAAG 2 cut(s) 51, 210
AcyI GRCGYC 1 cut(s) 302
AfaI GTAC 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 479
AgsI TTSAA 3 cut(s) 62, 291, 439
AluBI AGCT 6 cut(s) 72, 212, 294, 386, 404, 443
AluI AGCT 6 cut(s) 72, 212, 294, 386, 404, 443
Alw21I GWGCWC 1 cut(s) 74
AlwI GGATC 1 cut(s) 12
ApoI RAATTY 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 468
AsuHPI GGTGA 1 cut(s) 32
AvaII GGWCC 1 cut(s) 468
BanII GRGCYC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 74
BccI CCATC 4 cut(s) 46, 89, 235, 338
BclI TGATCA 1 cut(s) 22
Bme18I GGWCC 1 cut(s) 468
BmgT120I GGNCC 1 cut(s) 468
BmiI GGNNCC 1 cut(s) 470
BmsI GCATC 4 cut(s) 123, 145, 211, 310
Bpu10I CCTNAGC 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 478
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 478
BseGI GGATG 5 cut(s) 100, 226, 276, 325, 466
BseLI CCNNNNNNNGG 1 cut(s) 479
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 432
BslI CCNNNNNNNGG 1 cut(s) 479
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 2 cut(s) 4, 22
Bsp19I CCATGG 1 cut(s) 478
BspACI CCGC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 86
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 470
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 63
BsrFI RCCGGY 1 cut(s) 431
BsrI ACTGG 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 1 cut(s) 478
BssMI GATC 2 cut(s) 4, 22
BssNI GRCGYC 1 cut(s) 302
BssT1I CCWWGG 1 cut(s) 478
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 433
BstDEI CTNAG 1 cut(s) 73
BstDSI CCRYGG 1 cut(s) 478
BstF5I GGATG 5 cut(s) 100, 226, 276, 325, 466
BstKTI GATC 2 cut(s) 7, 25
BstMBI GATC 2 cut(s) 4, 22
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtgI CCRYGG 1 cut(s) 478
BtsCI GGATG 5 cut(s) 100, 226, 276, 325, 466
Cac8I GCNNGC 1 cut(s) 433
CciI TCATGA 1 cut(s) 367
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 1 cut(s) 468
CseI GACGC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 174
CspCI CAANNNNNGTGG 2 cut(s) 197, 232
CviAII CATG 3 cut(s) 262, 368, 479
CviQI GTAC 1 cut(s) 174
DdeI CTNAG 1 cut(s) 73
DpnI GATC 2 cut(s) 6, 24
DpnII GATC 2 cut(s) 4, 22
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 468
Eco53kI GAGCTC 1 cut(s) 72
Eco57I CTGAAG 2 cut(s) 51, 210
EcoICRI GAGCTC 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 478
EcoT22I ATGCAT 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 478
FaeI CATG 3 cut(s) 265, 371, 482
FatI CATG 3 cut(s) 261, 367, 478
FbaI TGATCA 1 cut(s) 22
FokI GGATG 5 cut(s) 107, 233, 263, 332, 473
FriOI GRGCYC 1 cut(s) 74
HapII CCGG 1 cut(s) 432
HgaI GACGC 1 cut(s) 310
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 3 cut(s) 265, 371, 482
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HindIII AAGCTT 1 cut(s) 384
HpaII CCGG 1 cut(s) 432
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 2 cut(s) 44, 375
Hpy188III TCNNGA 1 cut(s) 368
Hpy8I GTNNAC 2 cut(s) 44, 375
Hpy99I CGWCG 1 cut(s) 304
HpyCH4V TGCA 5 cut(s) 11, 136, 323, 359, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpyF3I CTNAG 1 cut(s) 73
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 3 cut(s) 265, 371, 482
KroI GCCGGC 1 cut(s) 431
KroNI GCCGGC 1 cut(s) 433
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 2 cut(s) 4, 22
LguI GCTCTTC 1 cut(s) 63
LweI GCATC 4 cut(s) 123, 145, 211, 310
MalI GATC 2 cut(s) 6, 24
MboI GATC 2 cut(s) 4, 22
MboII GAAGA 4 cut(s) 50, 142, 203, 242
MfeI CAATTG 1 cut(s) 47
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 2 cut(s) 47, 229
MmeI TCCRAC 2 cut(s) 205, 438
MnlI CCTC 2 cut(s) 406, 423
Mph1103I ATGCAT 1 cut(s) 138
MroNI GCCGGC 1 cut(s) 431
MspI CCGG 1 cut(s) 432
MunI CAATTG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 150
NaeI GCCGGC 1 cut(s) 433
NcoI CCATGG 1 cut(s) 478
NdeII GATC 2 cut(s) 4, 22
NgoMIV GCCGGC 1 cut(s) 431
NlaIII CATG 3 cut(s) 265, 371, 482
NlaIV GGNNCC 1 cut(s) 470
NsiI ATGCAT 1 cut(s) 138
PagI TCATGA 1 cut(s) 367
PciSI GCTCTTC 1 cut(s) 63
PdiI GCCGGC 1 cut(s) 433
PflMI CCANNNNNTGG 1 cut(s) 479
PpuMI RGGWCCY 1 cut(s) 468
Psp124BI GAGCTC 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 468
PspN4I GGNNCC 1 cut(s) 470
PspPI GGNCC 1 cut(s) 468
PspPPI RGGWCCY 1 cut(s) 468
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SacI GAGCTC 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 4, 22
Sau96I GGNCC 1 cut(s) 468
SduI GDGCHC 1 cut(s) 74
SfaNI GCATC 4 cut(s) 123, 145, 211, 310
SinI GGWCC 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 2 cut(s) 47, 229
SsiI CCGC 1 cut(s) 144
SspI AATATT 1 cut(s) 425
SstI GAGCTC 1 cut(s) 74
StyI CCWWGG 1 cut(s) 478
TasI AATT 2 cut(s) 47, 229
TspDTI ATGAA 3 cut(s) 143, 356, 477
Van91I CCANNNNNTGG 1 cut(s) 479
VpaK11BI GGWCC 1 cut(s) 468
XapI RAATTY 1 cut(s) 229
XcmI CCANNNNNNNNNTGG 1 cut(s) 312
Zsp2I ATGCAT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.