Rmu_sc0000315.1_g000017

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000315.1
OG0000146
Physical Location & Seq
Forward (+)
85483 .. 85752
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000315.1_g000017.1.cds

Sequence Viewer

Length: 270 bp
atgtttcaggaaattgatcagcgtatggcctctcaaaataacacagtggctgcagttgttcaagagaccattgccatggcacgaatgcgagttcacatgtttcttagtggacttgattcagattatgatcaagtccgtggtgagattctacgcaaagacccaaaattcgacttggagcaaagttatgcatatgttcggaaggtgcattctgagaggcaggcaatgggacacgcctctaaatcctctgccatggctgtccaacgcaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

89

Amino Acids

10.22

Weight (kDa)

9.15

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 164
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 59
AlwNI CAGNNNCTG 1 cut(s) 50
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 164
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AsuHPI GGTGA 1 cut(s) 152
BbvI GCAGC 1 cut(s) 37
BclI TGATCA 2 cut(s) 16, 127
BcoDI GTCTC 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 51
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BsaBI GATNNNNATC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 3 cut(s) 75, 136, 249
Bse3DI GCAATG 2 cut(s) 69, 228
Bse8I GATNNNNATC 1 cut(s) 126
BseDI CCNNGG 3 cut(s) 75, 136, 249
BseJI GATNNNNATC 1 cut(s) 126
BseMI GCAATG 2 cut(s) 69, 228
BseMII CTCAG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 1 cut(s) 29
BslFI GGGAC 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 240
BsmI GAATGC 2 cut(s) 90, 205
BsnI GGCC 1 cut(s) 29
Bso31I GGTCTC 1 cut(s) 59
Bsp143I GATC 2 cut(s) 16, 127
Bsp19I CCATGG 2 cut(s) 75, 249
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 202
BspMAI CTGCAG 1 cut(s) 55
BspTNI GGTCTC 1 cut(s) 59
BsrDI GCAATG 2 cut(s) 69, 228
BssECI CCNNGG 3 cut(s) 75, 136, 249
BssMI GATC 2 cut(s) 16, 127
BssT1I CCWWGG 2 cut(s) 75, 249
Bst4CI ACNGT 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 104, 210
BstDSI CCRYGG 3 cut(s) 75, 136, 249
BstKTI GATC 2 cut(s) 19, 130
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 2 cut(s) 16, 127
BstNSI RCATGY 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 37
BstXI CCANNNNNNTGG 1 cut(s) 76
BsuRI GGCC 1 cut(s) 29
BtgI CCRYGG 3 cut(s) 75, 136, 249
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 219
CaiI CAGNNNCTG 1 cut(s) 50
CviAII CATG 3 cut(s) 76, 97, 250
CviJI RGCY 3 cut(s) 29, 50, 254
CviKI_1 RGCY 3 cut(s) 29, 50, 254
DdeI CTNAG 2 cut(s) 104, 210
DpnI GATC 2 cut(s) 18, 129
DpnII GATC 2 cut(s) 16, 127
Eco130I CCWWGG 2 cut(s) 75, 249
Eco31I GGTCTC 1 cut(s) 59
EcoT14I CCWWGG 2 cut(s) 75, 249
EcoT22I ATGCAT 1 cut(s) 190
ErhI CCWWGG 2 cut(s) 75, 249
FaeI CATG 3 cut(s) 79, 100, 253
FaiI YATR 8 cut(s) 26, 77, 98, 126, 186, 190, 192, 251
FaqI GGGAC 1 cut(s) 240
FatI CATG 3 cut(s) 75, 96, 249
FauNDI CATATG 1 cut(s) 190
FbaI TGATCA 2 cut(s) 16, 127
Fnu4HI GCNGC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 1 cut(s) 29
Hin1II CATG 3 cut(s) 79, 100, 253
HinfI GANTC 2 cut(s) 116, 145
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 94, 110
Hpy188I TCNGA 3 cut(s) 121, 198, 211
Hpy188III TCNNGA 2 cut(s) 8, 62
Hpy8I GTNNAC 2 cut(s) 94, 110
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 3 cut(s) 53, 188, 205
HpyF3I CTNAG 2 cut(s) 104, 210
Hsp92II CATG 3 cut(s) 79, 100, 253
Ksp22I TGATCA 2 cut(s) 16, 127
Kzo9I GATC 2 cut(s) 16, 127
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 1 cut(s) 203
Lsp1109I GCAGC 1 cut(s) 37
MalI GATC 2 cut(s) 18, 129
MboI GATC 2 cut(s) 16, 127
MluCI AATT 2 cut(s) 12, 164
MnlI CCTC 4 cut(s) 40, 207, 244, 253
Mph1103I ATGCAT 1 cut(s) 190
MslI CAYNNNNRTG 1 cut(s) 74
Mva1269I GAATGC 2 cut(s) 90, 205
NcoI CCATGG 2 cut(s) 75, 249
NdeI CATATG 1 cut(s) 190
NdeII GATC 2 cut(s) 16, 127
NlaIII CATG 3 cut(s) 79, 100, 253
NsiI ATGCAT 1 cut(s) 190
NspI RCATGY 1 cut(s) 100
PciI ACATGT 1 cut(s) 96
PctI GAATGC 2 cut(s) 90, 205
PfeI GAWTC 2 cut(s) 116, 145
PkrI GCNGC 1 cut(s) 52
PscI ACATGT 1 cut(s) 96
PstI CTGCAG 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 74
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 2 cut(s) 16, 127
SetI ASST 1 cut(s) 204
SfcI CTRYAG 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 2 cut(s) 12, 164
StyI CCWWGG 2 cut(s) 75, 249
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 168
TasI AATT 2 cut(s) 12, 164
TfiI GAWTC 2 cut(s) 116, 145
TscAI CASTG 1 cut(s) 51
TseI GCWGC 1 cut(s) 50
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 1 cut(s) 51
XapI RAATTY 1 cut(s) 164
XceI RCATGY 1 cut(s) 100
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.