FvH4_3g21840

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000281
Physical Location & Seq
Forward (+)
14899071 .. 14900352
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21840.t1

Sequence Viewer

Length: 642 bp
ATGGCCATGAGAGCTGTTCTACTTCTCGGGTTTCTTGCTTTTGCAACCATTATTACCATCAATGTTGGTTCATGCAATGGAAACCTGGGTGTGCCTGCTTGCAAAGAAAGTGAAAAACAAGCACTTTTGATGTTCAAGCAAGATCTTGAGGATCCTTCAAACCGGCTTTCGTCATGGCTCAAGGCCTTGACTGTTGCAATTGGACTGGAGTTGTCTGAAATTGATTTCGGATCGAACTATCTTAGTCAAGATATACCAGAGTGGTTATTTCACCAAAGAAACCTCACCTCATTGAAATTAGGAAACAATCTACTCCAAGGATCACTTCCTAGGTCCATCGGATTGACATCCATTGTTACTCTTGACCTGCGTCATAATAAGTTGGAAGGGAAGATCCCAAACTCTTTGGGAAATCTTTGCGGCTTGATGGTTCTTAACCTGTCCATGAACAATTTCATCGTTGCAAATGTATCAGAAATCTTTGAGAGTTTGTCTTGGTGTGGTTCAGATCGATTAAACTCGTTGTCATTAGGGTATAATAATCTTTCGGGTAGTTTGACAGAGCATGTAGGGAAGTTTAAAAACTTGAGCCGCCTTGATCTTTCTGGCAACTCAATAACAGAGCATATAAGGAGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

214

Amino Acids

23.31

Weight (kDa)

6.42

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 71 - 128 5.1e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 375
AciI CCGC 2 cut(s) 420, 592
AclWI GGATC 5 cut(s) 146, 159, 238, 328, 388
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 3 cut(s) 136, 159, 295
AjnI CCWGG 1 cut(s) 84
AjuI GAANNNNNNNTTGG 2 cut(s) 309, 341
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
AlwI GGATC 5 cut(s) 146, 159, 238, 328, 388
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 2 cut(s) 3, 183
Asp700I GAANNNNTTC 1 cut(s) 452
AspA2I CCTAGG 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 333
AsuHPI GGTGA 2 cut(s) 263, 277
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 1 cut(s) 333
AvrII CCTAGG 1 cut(s) 329
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 151
BccI CCATC 3 cut(s) 65, 344, 421
BciT130I CCWGG 1 cut(s) 86
BfaI CTAG 1 cut(s) 330
BfuAI ACCTGC 1 cut(s) 375
BglII AGATCT 1 cut(s) 142
BisI GCNGC 2 cut(s) 421, 592
BlnI CCTAGG 1 cut(s) 329
BlsI GCNGC 2 cut(s) 422, 593
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 333
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 86
BoxI GACNNNNGTC 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 3 cut(s) 164, 167, 607
Bsa29I ATCGAT 1 cut(s) 511
BsaBI GATNNNNATC 1 cut(s) 346
BsaJI CCNNGG 3 cut(s) 85, 316, 329
Bse118I RCCGGY 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 82
Bse8I GATNNNNATC 1 cut(s) 346
BseBI CCWGG 1 cut(s) 86
BseCI ATCGAT 1 cut(s) 511
BseDI CCNNGG 3 cut(s) 85, 316, 329
BseGI GGATG 1 cut(s) 347
BseJI GATNNNNATC 1 cut(s) 346
BseMI GCAATG 1 cut(s) 82
BseNI ACTGG 1 cut(s) 210
BshFI GGCC 2 cut(s) 5, 185
BshVI ATCGAT 1 cut(s) 511
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 1 cut(s) 163
BsnI GGCC 2 cut(s) 5, 185
BsoBI CYCGRG 1 cut(s) 26
Bsp143I GATC 7 cut(s) 142, 151, 230, 320, 393, 508, 598
BspACI CCGC 2 cut(s) 420, 592
BspANI GGCC 2 cut(s) 5, 185
BspDI ATCGAT 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 153
BspMI ACCTGC 1 cut(s) 375
BspPI GGATC 5 cut(s) 146, 159, 238, 328, 388
BsrDI GCAATG 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 162
BsrI ACTGG 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 162
BssECI CCNNGG 3 cut(s) 85, 316, 329
BssMI GATC 7 cut(s) 142, 151, 230, 320, 393, 508, 598
BssT1I CCWWGG 2 cut(s) 316, 329
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 193
BstC8I GCNNGC 2 cut(s) 96, 100
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 1 cut(s) 347
BstKTI GATC 7 cut(s) 145, 154, 233, 323, 396, 511, 601
BstMBI GATC 7 cut(s) 142, 151, 230, 320, 393, 508, 598
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 569
BstPAI GACNNNNGTC 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 84
BstX2I RGATCY 3 cut(s) 142, 151, 393
BstYI RGATCY 3 cut(s) 142, 151, 393
Bsu15I ATCGAT 1 cut(s) 511
BsuRI GGCC 2 cut(s) 5, 185
BsuTUI ATCGAT 1 cut(s) 511
BtsCI GGATG 1 cut(s) 347
BveI ACCTGC 1 cut(s) 375
Cac8I GCNNGC 2 cut(s) 96, 100
Cfr10I RCCGGY 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 333
ClaI ATCGAT 1 cut(s) 511
CseI GACGC 1 cut(s) 359
CviAII CATG 5 cut(s) 7, 72, 174, 445, 566
CviJI RGCY 7 cut(s) 5, 14, 166, 178, 185, 423, 591
CviKI_1 RGCY 7 cut(s) 5, 14, 166, 178, 185, 423, 591
DdeI CTNAG 1 cut(s) 242
DpnI GATC 7 cut(s) 144, 153, 232, 322, 395, 510, 600
DpnII GATC 7 cut(s) 142, 151, 230, 320, 393, 508, 598
DraI TTTAAA 1 cut(s) 580
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 316, 329
Eco147I AGGCCT 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 84
EcoT14I CCWWGG 2 cut(s) 316, 329
ErhI CCWWGG 2 cut(s) 316, 329
FaeI CATG 5 cut(s) 10, 75, 177, 448, 569
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FatI CATG 5 cut(s) 6, 71, 173, 444, 565
Fnu4HI GCNGC 2 cut(s) 421, 592
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 2 cut(s) 421, 592
FspBI CTAG 1 cut(s) 330
GluI GCNGC 2 cut(s) 421, 592
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 2 cut(s) 5, 185
HapII CCGG 1 cut(s) 163
HgaI GACGC 1 cut(s) 359
Hin1II CATG 5 cut(s) 10, 75, 177, 448, 569
HpaII CCGG 1 cut(s) 163
HphI GGTGA 2 cut(s) 263, 277
Hpy188I TCNGA 5 cut(s) 217, 230, 341, 475, 508
Hpy188III TCNNGA 3 cut(s) 146, 248, 362
HpyAV CCTTC 2 cut(s) 165, 380
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 5 cut(s) 44, 75, 102, 197, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 242
Hsp92II CATG 5 cut(s) 10, 75, 177, 448, 569
Kzo9I GATC 7 cut(s) 142, 151, 230, 320, 393, 508, 598
LmnI GCTCC 1 cut(s) 633
LpnPI CCDG 9 cut(s) 71, 98, 108, 176, 191, 270, 380, 452, 591
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 355
MalI GATC 7 cut(s) 144, 153, 232, 322, 395, 510, 600
MboI GATC 7 cut(s) 142, 151, 230, 320, 393, 508, 598
MboII GAAGA 1 cut(s) 403
MfeI CAATTG 1 cut(s) 198
MflI RGATCY 3 cut(s) 142, 151, 393
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 198, 219, 296, 451
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 3 cut(s) 142, 293, 298
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 452
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 435, 515, 579
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 163
MspR9I CCNGG 1 cut(s) 86
MunI CAATTG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 7 cut(s) 142, 151, 230, 320, 393, 508, 598
NlaIII CATG 5 cut(s) 10, 75, 177, 448, 569
NlaIV GGNNCC 1 cut(s) 153
NspI RCATGY 1 cut(s) 569
PceI AGGCCT 1 cut(s) 185
PdmI GAANNNNTTC 1 cut(s) 452
PkrI GCNGC 2 cut(s) 422, 593
PshAI GACNNNNGTC 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 333
PsuI RGATCY 3 cut(s) 142, 151, 393
SaqAI TTAA 3 cut(s) 435, 515, 579
SatI GCNGC 2 cut(s) 421, 592
Sau3AI GATC 7 cut(s) 142, 151, 230, 320, 393, 508, 598
Sau96I GGNCC 1 cut(s) 333
ScrFI CCNGG 1 cut(s) 86
SetI ASST 7 cut(s) 16, 87, 285, 290, 335, 369, 441
SinI GGWCC 1 cut(s) 333
SmlI CTYRAG 3 cut(s) 146, 179, 586
SmoI CTYRAG 3 cut(s) 146, 179, 586
Sse9I AATT 4 cut(s) 198, 219, 296, 451
SseBI AGGCCT 1 cut(s) 185
SsiI CCGC 2 cut(s) 420, 592
SspMI CTAG 1 cut(s) 330
StuI AGGCCT 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 2 cut(s) 316, 329
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 2 cut(s) 233, 511
TasI AATT 4 cut(s) 198, 219, 296, 451
TauI GCSGC 2 cut(s) 423, 594
Tru1I TTAA 3 cut(s) 435, 515, 579
Tru9I TTAA 3 cut(s) 435, 515, 579
TspDTI ATGAA 3 cut(s) 60, 445, 461
VpaK11BI GGWCC 1 cut(s) 333
XceI RCATGY 1 cut(s) 569
XmaJI CCTAGG 1 cut(s) 329
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.