MD08G1238900.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000281
Physical Location & Seq
Reverse (-)
30580278 .. 30580997
720 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1238900.v1.1.491

Sequence Viewer

Length: 720 bp
ATGGTTTTTAGCCTTCGTTCAAATAAGCTTCACGGCGACATTCCTCGTGAACTTTGCGGTCTCGTAAAGCTTCAAATCTTGGACCTTGCACATAATGATCTCGTTGGAACGATACCAACATGTTTCTCTAATTTTAAAGCCATGACCAACAAGTTAGATTGGAGCAATTCATTTTCATTCTTCAGATACATTCATGGTTTTTATGGCATGTACATGGATAATGCCATCTTGGTGGCAAAAGGTAGAGAACAGAGATTTAGCCGTTTGCTTAGATTGGTAACTAGCTTGGATCTTTCACACAACAATATATCTGGTGAGATACCTGAGGAACTGACCAGCCTCTTCGGGTTGCTATCATTGAATTTATCGAACAATCTTTTGACCGGAAGAATCCCATCAAAGATGGGTGAAATGGAAAGGTTAGAAGCTCTTGATATGTCCAAGAACCAACTTTCCGGTGGAATTCCTCCGAGCATGTCGAATTTGACATTTCTTTCTCACCTTAACTTGTCCTACAACAATTTGACAGGGCCGATTCCACGAGGCACTCAACTTCAGAGCTTTGATTTGTCTACATACGTTGGTAATAAACTTTGTGGACCTGCACTCGAAGAGAGTTGCAGCACAGATGGGGAGAAACGCGGAGGAAGTGGTACGCTGAAAGAGAATTGGTTCTGTCTGAGCATGGGAATAGCTGCCATCTTCTTTCTTGGTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

240

Amino Acids

26.44

Weight (kDa)

6.95

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 93 - 151 2e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 610
AccI GTMKAC 1 cut(s) 572
AccII CGCG 1 cut(s) 642
AciI CCGC 2 cut(s) 57, 642
AclWI GGATC 1 cut(s) 297
AcsI RAATTY 3 cut(s) 361, 462, 481
AcuI CTGAAG 2 cut(s) 166, 539
AfaI GTAC 2 cut(s) 212, 655
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 3 cut(s) 21, 74, 361
AloI GAACNNNNNNTCC 2 cut(s) 437, 469
AluBI AGCT 6 cut(s) 28, 70, 285, 428, 561, 695
AluI AGCT 6 cut(s) 28, 70, 285, 428, 561, 695
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 1 cut(s) 297
AoxI GGCC 1 cut(s) 530
ApeKI GCWGC 2 cut(s) 621, 695
ApoI RAATTY 3 cut(s) 361, 462, 481
Asp700I GAANNNNTTC 1 cut(s) 671
AspS9I GGNCC 3 cut(s) 82, 530, 599
AsuHPI GGTGA 3 cut(s) 326, 419, 491
AvaII GGWCC 2 cut(s) 82, 599
AxyI CCTNAGG 1 cut(s) 324
BauI CACGAG 2 cut(s) 45, 540
BbvI GCAGC 2 cut(s) 633, 682
BccI CCATC 5 cut(s) 233, 397, 403, 623, 707
BceAI ACGGC 2 cut(s) 49, 246
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 610
BisI GCNGC 2 cut(s) 622, 696
BlsI GCNGC 2 cut(s) 623, 697
Bme18I GGWCC 2 cut(s) 82, 599
BmgT120I GGNCC 3 cut(s) 82, 530, 599
BmiI GGNNCC 1 cut(s) 715
BsaI GGTCTC 1 cut(s) 65
BsaWI WCCGGW 2 cut(s) 383, 455
Bse21I CCTNAGG 1 cut(s) 324
BseMII CTCAG 2 cut(s) 315, 671
BseXI GCAGC 2 cut(s) 633, 682
BsgI GTGCAG 1 cut(s) 588
Bsh1236I CGCG 1 cut(s) 642
BshFI GGCC 1 cut(s) 532
BsiSI CCGG 2 cut(s) 384, 456
BsmAI GTCTC 1 cut(s) 65
BsnI GGCC 1 cut(s) 532
Bso31I GGTCTC 1 cut(s) 65
Bsp1407I TGTACA 1 cut(s) 210
Bsp143I GATC 2 cut(s) 97, 289
BspACI CCGC 2 cut(s) 57, 642
BspANI GGCC 1 cut(s) 532
BspCNI CTCAG 2 cut(s) 316, 672
BspFNI CGCG 1 cut(s) 642
BspLI GGNNCC 1 cut(s) 715
BspMI ACCTGC 1 cut(s) 610
BspPI GGATC 1 cut(s) 297
BspTNI GGTCTC 1 cut(s) 65
BsrGI TGTACA 1 cut(s) 210
BssMI GATC 2 cut(s) 97, 289
BssSI CACGAG 2 cut(s) 45, 540
Bst2BI CACGAG 2 cut(s) 45, 540
Bst6I CTCTTC 2 cut(s) 347, 606
BstAUI TGTACA 1 cut(s) 210
BstDEI CTNAG 3 cut(s) 269, 324, 680
BstFNI CGCG 1 cut(s) 642
BstKTI GATC 2 cut(s) 100, 292
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 2 cut(s) 97, 289
BstNSI RCATGY 3 cut(s) 123, 211, 478
BstUI CGCG 1 cut(s) 642
BstV1I GCAGC 2 cut(s) 633, 682
BstX2I RGATCY 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 1 cut(s) 289
Bsu36I CCTNAGG 1 cut(s) 324
BsuRI GGCC 1 cut(s) 532
BveI ACCTGC 1 cut(s) 610
Cfr13I GGNCC 3 cut(s) 82, 530, 599
Csp6I GTAC 2 cut(s) 211, 654
CviAII CATG 7 cut(s) 120, 142, 194, 208, 214, 475, 685
CviQI GTAC 2 cut(s) 211, 654
DdeI CTNAG 3 cut(s) 269, 324, 680
DpnI GATC 2 cut(s) 99, 291
DpnII GATC 2 cut(s) 97, 289
DraI TTTAAA 1 cut(s) 136
Eam1104I CTCTTC 2 cut(s) 347, 606
EarI CTCTTC 2 cut(s) 347, 606
Eco31I GGTCTC 1 cut(s) 65
Eco47I GGWCC 2 cut(s) 82, 599
Eco57I CTGAAG 2 cut(s) 166, 539
Eco81I CCTNAGG 1 cut(s) 324
EcoRI GAATTC 1 cut(s) 462
FaeI CATG 7 cut(s) 123, 145, 197, 211, 217, 478, 688
FatI CATG 7 cut(s) 119, 141, 193, 207, 213, 474, 684
FblI GTMKAC 1 cut(s) 572
Fnu4HI GCNGC 2 cut(s) 622, 696
Fsp4HI GCNGC 2 cut(s) 622, 696
FspBI CTAG 1 cut(s) 282
GluI GCNGC 2 cut(s) 622, 696
HaeIII GGCC 1 cut(s) 532
HapII CCGG 2 cut(s) 384, 456
Hin1II CATG 7 cut(s) 123, 145, 197, 211, 217, 478, 688
HindIII AAGCTT 2 cut(s) 26, 68
HinfI GANTC 2 cut(s) 390, 535
HpaII CCGG 2 cut(s) 384, 456
HphI GGTGA 3 cut(s) 326, 419, 491
Hpy166II GTNNAC 3 cut(s) 50, 573, 599
Hpy188I TCNGA 4 cut(s) 185, 471, 558, 681
Hpy188III TCNNGA 2 cut(s) 47, 431
Hpy8I GTNNAC 3 cut(s) 50, 573, 599
HpyAV CCTTC 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 3 cut(s) 89, 605, 621
HpyF3I CTNAG 3 cut(s) 269, 324, 680
HpySE526I ACGT 1 cut(s) 579
Hsp92II CATG 7 cut(s) 123, 145, 197, 211, 217, 478, 688
Kzo9I GATC 2 cut(s) 97, 289
LmnI GCTCC 1 cut(s) 162
LpnPI CCDG 7 cut(s) 297, 336, 349, 397, 469, 513, 615
Lsp1109I GCAGC 2 cut(s) 633, 682
MaeI CTAG 1 cut(s) 282
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 1 cut(s) 277
MalI GATC 2 cut(s) 99, 291
MboI GATC 2 cut(s) 97, 289
MboII GAAGA 5 cut(s) 172, 334, 399, 623, 694
MflI RGATCY 1 cut(s) 289
MluCI AATT 7 cut(s) 130, 166, 361, 462, 481, 520, 667
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 6 cut(s) 54, 319, 350, 477, 536, 638
MroXI GAANNNNTTC 1 cut(s) 671
MseI TTAA 2 cut(s) 135, 504
MslI CAYNNNNRTG 2 cut(s) 212, 230
MspI CCGG 2 cut(s) 384, 456
MvnI CGCG 1 cut(s) 642
NdeII GATC 2 cut(s) 97, 289
NlaIII CATG 7 cut(s) 123, 145, 197, 211, 217, 478, 688
NlaIV GGNNCC 1 cut(s) 715
NspI RCATGY 3 cut(s) 123, 211, 478
PciI ACATGT 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 2 cut(s) 390, 535
PkrI GCNGC 2 cut(s) 623, 697
PscI ACATGT 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 715
PspPI GGNCC 3 cut(s) 82, 530, 599
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 2 cut(s) 212, 655
RsaNI GTAC 2 cut(s) 211, 654
RseI CAYNNNNRTG 2 cut(s) 212, 230
SaqAI TTAA 2 cut(s) 135, 504
SatI GCNGC 2 cut(s) 622, 696
Sau3AI GATC 2 cut(s) 97, 289
Sau96I GGNCC 3 cut(s) 82, 530, 599
SinI GGWCC 2 cut(s) 82, 599
SmiMI CAYNNNNRTG 2 cut(s) 212, 230
Sse9I AATT 7 cut(s) 130, 166, 361, 462, 481, 520, 667
SsiI CCGC 2 cut(s) 57, 642
SspMI CTAG 1 cut(s) 282
TaiI ACGT 1 cut(s) 582
TaqI TCGA 3 cut(s) 368, 479, 609
TasI AATT 7 cut(s) 130, 166, 361, 462, 481, 520, 667
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 2 cut(s) 390, 535
Tru1I TTAA 2 cut(s) 135, 504
Tru9I TTAA 2 cut(s) 135, 504
TseI GCWGC 2 cut(s) 621, 695
TspDTI ATGAA 3 cut(s) 159, 165, 182
VpaK11BI GGWCC 2 cut(s) 82, 599
XapI RAATTY 3 cut(s) 361, 462, 481
XceI RCATGY 3 cut(s) 123, 211, 478
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XmiI GTMKAC 1 cut(s) 572
XmnI GAANNNNTTC 1 cut(s) 671
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.