FvH4_7g26564

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
20039472 .. 20040580
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26564.t1

Sequence Viewer

Length: 1032 bp
ATGGGACACTTGCCATTGCTCGGATCACTTTACCTGCGCAATAATCAGCTCTCTGGGGAGTTGCCTTCATCAATGCAGAATTTGAGTGAATTGGAGGTTGTTGACCTTGGTCTAAATAAGTTGGAGGGAAGCTTACCACCATGGATAGGAAACAGCCTTTCAAGCTTGATGGTTCTTAGCCTTCGTTCAAATAAGTTTCAGGGAGACATTCCGCACGAACTTTGTAATCTCGAATATCTTCAAATTTTGGACATTGCAAATAACAATCTCTCTGGAACAATACCAATATGCTTCAACAGTTTTAGTTCCATGAAAACCTCGTCAAAATCAGATAGTTTTCCTTATTTTGACATGCATAATTTGTTAACTGTGATGAAACCCGGAGAATTGTGGTCTGGAACGTACGAAGATAATGCGGTCTTGGTGACAAAAGGGAAGGAAATGAGATATAGCAAGATTCTTCCATTTGTAAAAAGCATGGACATTTCAGCCAACGTTATATCTGGGGAGATACCTGAGGAACTGACCAGCCTCATTGGCTTGCAAACTTTGAACTTATCAAACAATTGTTTGACCGGAAGAATCCCTTCAAAGATTGCTAATTTGAGTCAGTTAGAAACTCTTGATTTGTCGATGAACAAACTCTATGGTGAAATTCCTGCAAGCGTGACGAGTATGACATTTCTGAGTCATTTGAACTTGTCCTACAACAATCTGACCGGACGGATTCCAGAAAGTACTCAGCTTCAGAGCCTTGATCAGTCCGGCTTTGTTGGCAATGAACTCTGCGGACCTCCACTCATCAAGAATTGCAGTGCAAGCAAGGTGATACCATTACCACCAACAGTTGAGCAAGAGAGAGGATATGATTTTCTTGAAGACAAGTGGTTCTATTTGAGCTTGGGATTGGGATTCGCAGTTGGTTTCTGGACTATACTTGGTTCCTTACTGGTAAACTTGCCATGGAGCTTTGCCTTTTCACGGTACCTCAATAGCATTGTGCTTAAACTTTATGCTGTAATTAATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

344

Amino Acids

37.91

Weight (kDa)

5.09

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 2 - 87 8.7e-06 Leucine-rich repeat region
LRR_8 PF13855 158 - 215 2.5e-07 Leucine rich repeat
LRR_14 PF23598 173 - 254 2e-08 Leucine-rich repeat region
LRR_4 PF12799 181 - 215 3.7e-07 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 38
Acc36I ACCTGC 1 cut(s) 42
Acc65I GGTACC 1 cut(s) 984
AccB1I GGYRCC 1 cut(s) 984
AciI CCGC 3 cut(s) 212, 416, 789
AclI AACGTT 1 cut(s) 495
AclWI GGATC 1 cut(s) 31
AcsI RAATTY 3 cut(s) 79, 243, 654
AcuI CTGAAG 1 cut(s) 731
AfaI GTAC 3 cut(s) 404, 739, 986
AfiI CCNNNNNNNGG 3 cut(s) 20, 146, 981
AgsI TTSAA 8 cut(s) 162, 189, 242, 295, 553, 591, 697, 878
AluBI AGCT 6 cut(s) 49, 132, 165, 745, 900, 969
AluI AGCT 6 cut(s) 49, 132, 165, 745, 900, 969
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 1 cut(s) 31
ApoI RAATTY 3 cut(s) 79, 243, 654
AseI ATTAAT 1 cut(s) 1023
Asp700I GAANNNNTTC 2 cut(s) 237, 586
Asp718I GGTACC 1 cut(s) 984
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 791
AsuC2I CCSGG 1 cut(s) 381
AsuHPI GGTGA 3 cut(s) 436, 662, 838
AvaII GGWCC 1 cut(s) 791
AxyI CCTNAGG 1 cut(s) 516
BanI GGYRCC 1 cut(s) 984
BbsI GAAGAC 1 cut(s) 885
BccI CCATC 1 cut(s) 163
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BclI TGATCA 1 cut(s) 757
BcnI CCSGG 1 cut(s) 381
BcoDI GTCTC 1 cut(s) 198
BfuAI ACCTGC 1 cut(s) 42
BglI GCCNNNNNGGC 1 cut(s) 537
BmcAI AGTACT 1 cut(s) 739
Bme1390I CCNGG 1 cut(s) 381
Bme18I GGWCC 1 cut(s) 791
BmgT120I GGNCC 1 cut(s) 791
BmiI GGNNCC 2 cut(s) 943, 986
BmrFI CCNGG 1 cut(s) 381
BoxI GACNNNNGTC 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 885
BpuMI CCSGG 1 cut(s) 381
BsaJI CCNNGG 3 cut(s) 106, 140, 962
BsaWI WCCGGW 2 cut(s) 575, 719
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 146, 981
Bse1I ACTGG 1 cut(s) 954
Bse21I CCTNAGG 1 cut(s) 516
Bse3DI GCAATG 3 cut(s) 14, 252, 784
BseDI CCNNGG 3 cut(s) 106, 140, 962
BseLI CCNNNNNNNGG 3 cut(s) 20, 146, 981
BseMI GCAATG 3 cut(s) 14, 252, 784
BseMII CTCAG 3 cut(s) 507, 677, 755
BseNI ACTGG 1 cut(s) 954
BshNI GGYRCC 1 cut(s) 984
BsiSI CCGG 4 cut(s) 381, 576, 720, 765
BsiWI CGTACG 1 cut(s) 402
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 20, 146, 981
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 18
Bsp143I GATC 2 cut(s) 23, 757
Bsp19I CCATGG 2 cut(s) 140, 962
BspACI CCGC 3 cut(s) 212, 416, 789
BspCNI CTCAG 3 cut(s) 508, 678, 754
BspLI GGNNCC 2 cut(s) 943, 986
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 1 cut(s) 31
BspT107I GGYRCC 1 cut(s) 984
BsrDI GCAATG 3 cut(s) 14, 252, 784
BsrI ACTGG 1 cut(s) 954
BssECI CCNNGG 3 cut(s) 106, 140, 962
BssMI GATC 2 cut(s) 23, 757
BssT1I CCWWGG 3 cut(s) 106, 140, 962
Bst4CI ACNGT 4 cut(s) 299, 370, 847, 984
BstC8I GCNNGC 3 cut(s) 542, 664, 820
BstDEI CTNAG 4 cut(s) 176, 516, 686, 741
BstDSI CCRYGG 2 cut(s) 140, 962
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 2 cut(s) 26, 760
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 2 cut(s) 23, 757
BstMWI GCNNNNNNNGC 4 cut(s) 162, 537, 774, 819
BstNSI RCATGY 1 cut(s) 355
BstPAI GACNNNNGTC 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 379
BstV2I GAAGAC 1 cut(s) 885
Bsu36I CCTNAGG 1 cut(s) 516
BtgI CCRYGG 2 cut(s) 140, 962
BtsI GCAGTG 1 cut(s) 820
BtsIMutI CAGTG 1 cut(s) 820
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 3 cut(s) 542, 664, 820
CfoI GCGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 791
Csp6I GTAC 3 cut(s) 403, 738, 985
CviAII CATG 5 cut(s) 141, 310, 352, 478, 963
CviQI GTAC 3 cut(s) 403, 738, 985
DdeI CTNAG 4 cut(s) 176, 516, 686, 741
DpnI GATC 2 cut(s) 25, 759
DpnII GATC 2 cut(s) 23, 757
Eco130I CCWWGG 3 cut(s) 106, 140, 962
Eco47I GGWCC 1 cut(s) 791
Eco57I CTGAAG 1 cut(s) 731
Eco81I CCTNAGG 1 cut(s) 516
EcoT14I CCWWGG 3 cut(s) 106, 140, 962
EcoT22I ATGCAT 1 cut(s) 357
ErhI CCWWGG 3 cut(s) 106, 140, 962
FaeI CATG 5 cut(s) 144, 313, 355, 481, 966
FalI AAGNNNNNCTT 2 cut(s) 571, 603
FaqI GGGAC 1 cut(s) 18
FatI CATG 5 cut(s) 140, 309, 351, 477, 962
FbaI TGATCA 1 cut(s) 757
FspI TGCGCA 1 cut(s) 38
GlaI GCGC 1 cut(s) 38
HapII CCGG 4 cut(s) 381, 576, 720, 765
HhaI GCGC 1 cut(s) 39
Hin1II CATG 5 cut(s) 144, 313, 355, 481, 966
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HincII GTYRAC 2 cut(s) 103, 366
HindII GTYRAC 2 cut(s) 103, 366
HindIII AAGCTT 2 cut(s) 130, 163
HinfI GANTC 6 cut(s) 457, 582, 607, 688, 727, 912
HpaI GTTAAC 1 cut(s) 366
HpaII CCGG 4 cut(s) 381, 576, 720, 765
HphI GGTGA 3 cut(s) 436, 662, 838
Hpy166II GTNNAC 3 cut(s) 103, 366, 955
Hpy188I TCNGA 5 cut(s) 23, 331, 687, 717, 750
Hpy188III TCNNGA 8 cut(s) 230, 273, 396, 623, 731, 805, 875, 928
Hpy8I GTNNAC 3 cut(s) 103, 366, 955
HpyAV CCTTC 4 cut(s) 75, 191, 430, 597
HpyCH4III ACNGT 4 cut(s) 299, 370, 847, 984
HpyCH4IV ACGT 2 cut(s) 401, 495
HpyCH4V TGCA 7 cut(s) 76, 257, 355, 544, 662, 813, 818
HpyF10VI GCNNNNNNNGC 4 cut(s) 162, 537, 774, 819
HpyF3I CTNAG 4 cut(s) 176, 516, 686, 741
HpySE526I ACGT 2 cut(s) 401, 495
Hsp92II CATG 5 cut(s) 144, 313, 355, 481, 966
HspAI GCGC 1 cut(s) 37
KpnI GGTACC 1 cut(s) 988
Ksp22I TGATCA 1 cut(s) 757
KspAI GTTAAC 1 cut(s) 366
Kzo9I GATC 2 cut(s) 23, 757
LmnI GCTCC 1 cut(s) 966
MaeII ACGT 2 cut(s) 401, 495
MaeIII GTNAC 2 cut(s) 424, 667
MalI GATC 2 cut(s) 25, 759
MboI GATC 2 cut(s) 23, 757
MboII GAAGA 5 cut(s) 230, 419, 452, 591, 890
MfeI CAATTG 1 cut(s) 565
MlyI GAGTC 2 cut(s) 616, 697
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 8 cut(s) 88, 118, 328, 511, 542, 804, 854, 998
Mph1103I ATGCAT 1 cut(s) 357
MroXI GAANNNNTTC 2 cut(s) 237, 586
MseI TTAA 3 cut(s) 365, 1005, 1023
MspI CCGG 4 cut(s) 381, 576, 720, 765
MspR9I CCNGG 1 cut(s) 381
MunI CAATTG 1 cut(s) 565
MwoI GCNNNNNNNGC 4 cut(s) 162, 537, 774, 819
NciI CCSGG 1 cut(s) 381
NcoI CCATGG 2 cut(s) 140, 962
NdeII GATC 2 cut(s) 23, 757
NlaIII CATG 5 cut(s) 144, 313, 355, 481, 966
NlaIV GGNNCC 2 cut(s) 943, 986
NmuCI GTSAC 2 cut(s) 424, 667
NsbI TGCGCA 1 cut(s) 38
NsiI ATGCAT 1 cut(s) 357
NspI RCATGY 1 cut(s) 355
PdmI GAANNNNTTC 2 cut(s) 237, 586
PfeI GAWTC 4 cut(s) 457, 582, 727, 912
Pfl23II CGTACG 1 cut(s) 402
PleI GAGTC 2 cut(s) 615, 696
PpsI GAGTC 2 cut(s) 615, 696
PshAI GACNNNNGTC 1 cut(s) 108
PshBI ATTAAT 1 cut(s) 1023
Psp1406I AACGTT 1 cut(s) 495
PspLI CGTACG 1 cut(s) 402
PspN4I GGNNCC 2 cut(s) 943, 986
PspPI GGNCC 1 cut(s) 791
PsrI GAACNNNNNNTAC 2 cut(s) 689, 721
RsaI GTAC 3 cut(s) 404, 739, 986
RsaNI GTAC 3 cut(s) 403, 738, 985
SaqAI TTAA 3 cut(s) 365, 1005, 1023
Sau3AI GATC 2 cut(s) 23, 757
Sau96I GGNCC 1 cut(s) 791
ScaI AGTACT 1 cut(s) 739
SchI GAGTC 2 cut(s) 616, 697
ScrFI CCNGG 1 cut(s) 381
SinI GGWCC 1 cut(s) 791
SsiI CCGC 3 cut(s) 212, 416, 789
StyD4I CCNGG 1 cut(s) 379
StyI CCWWGG 3 cut(s) 106, 140, 962
TaaI ACNGT 4 cut(s) 299, 370, 847, 984
TaiI ACGT 2 cut(s) 404, 498
TaqI TCGA 2 cut(s) 231, 632
TatI WGTACW 1 cut(s) 737
TfiI GAWTC 4 cut(s) 457, 582, 727, 912
Tru1I TTAA 3 cut(s) 365, 1005, 1023
Tru9I TTAA 3 cut(s) 365, 1005, 1023
TscAI CASTG 1 cut(s) 820
TseFI GTSAC 2 cut(s) 424, 667
Tsp45I GTSAC 2 cut(s) 424, 667
TspDTI ATGAA 5 cut(s) 57, 326, 389, 650, 795
TspGWI ACGGA 1 cut(s) 739
TspRI CASTG 1 cut(s) 820
VpaK11BI GGWCC 1 cut(s) 791
VspI ATTAAT 1 cut(s) 1023
XapI RAATTY 3 cut(s) 79, 243, 654
XceI RCATGY 1 cut(s) 355
XmnI GAANNNNTTC 2 cut(s) 237, 586
ZrmI AGTACT 1 cut(s) 739
Zsp2I ATGCAT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.