FvH4_7g26567

Leucine Rich Repeat

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
20053808 .. 20054440
633 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26567.t1

Sequence Viewer

Length: 354 bp
ATGTTGTTCATGTATTTTTCATGCTTTTGTGTGAATCTCAATATTGAAAAGAACTACACAAGATCTCTTGATTTCTCCATCAACCAACTTTCTGTTGATTTCTCCATCAAGCAACTTTCTGGTGAACTTCCTGCTAGCGTAGTGAGGATGACATTTCTGAGTCACTTGAACTTGTCCTATAACAGTTTGATCGGTGAAAACACTCAGCTTCAGAGCCTTGTTCAGCCAAGCTTTCTTGGAACTGAACTTCGTAGACCTCCACTCACCAAGCCTTGCAGTGCAAGTAAGGTGATACCACCAACAGTTGAGCAACACAGAGTTATGAATAACTTGAAGACGAGTGGTGCTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.15

Weight (kDa)

8.93

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 253
AcuI CTGAAG 1 cut(s) 194
AgsI TTSAA 3 cut(s) 47, 169, 334
AluBI AGCT 2 cut(s) 208, 231
AluI AGCT 2 cut(s) 208, 231
AsuHPI GGTGA 4 cut(s) 134, 206, 256, 301
AsuNHI GCTAGC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 341
BccI CCATC 2 cut(s) 86, 113
BfaI CTAG 1 cut(s) 135
BglII AGATCT 1 cut(s) 62
BmtI GCTAGC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 341
BseGI GGATG 1 cut(s) 153
BseMII CTCAG 2 cut(s) 149, 218
Bsp143I GATC 2 cut(s) 62, 189
BspCNI CTCAG 2 cut(s) 150, 217
BspOI GCTAGC 1 cut(s) 138
BssMI GATC 2 cut(s) 62, 189
Bst4CI ACNGT 2 cut(s) 185, 304
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 2 cut(s) 158, 204
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 2 cut(s) 65, 192
BstMBI GATC 2 cut(s) 62, 189
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BtsCI GGATG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 283
Cac8I GCNNGC 1 cut(s) 136
CviAII CATG 2 cut(s) 10, 21
CviJI RGCY 5 cut(s) 208, 216, 226, 231, 271
CviKI_1 RGCY 5 cut(s) 208, 216, 226, 231, 271
DdeI CTNAG 2 cut(s) 158, 204
DpnI GATC 2 cut(s) 64, 191
DpnII GATC 2 cut(s) 62, 189
Eco57I CTGAAG 1 cut(s) 194
FaeI CATG 2 cut(s) 13, 24
FaiI YATR 4 cut(s) 11, 22, 180, 323
FatI CATG 2 cut(s) 9, 20
FblI GTMKAC 1 cut(s) 253
FokI GGATG 1 cut(s) 160
FspBI CTAG 1 cut(s) 135
Hin1II CATG 2 cut(s) 13, 24
HindIII AAGCTT 1 cut(s) 229
HinfI GANTC 2 cut(s) 34, 160
HphI GGTGA 4 cut(s) 134, 206, 256, 301
Hpy166II GTNNAC 2 cut(s) 125, 254
Hpy188I TCNGA 2 cut(s) 159, 213
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 2 cut(s) 125, 254
HpyCH4III ACNGT 2 cut(s) 185, 304
HpyCH4V TGCA 2 cut(s) 276, 281
HpyF3I CTNAG 2 cut(s) 158, 204
Hsp92II CATG 2 cut(s) 13, 24
Kzo9I GATC 2 cut(s) 62, 189
LpnPI CCDG 2 cut(s) 105, 144
MaeI CTAG 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 161
MalI GATC 2 cut(s) 64, 191
MboI GATC 2 cut(s) 62, 189
MboII GAAGA 1 cut(s) 346
MflI RGATCY 1 cut(s) 62
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 2 cut(s) 138, 267
NdeII GATC 2 cut(s) 62, 189
NheI GCTAGC 1 cut(s) 134
NlaIII CATG 2 cut(s) 13, 24
NmuCI GTSAC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 34
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PsuI RGATCY 1 cut(s) 62
Sau3AI GATC 2 cut(s) 62, 189
SchI GAGTC 1 cut(s) 169
SetI ASST 5 cut(s) 210, 233, 259, 291, 353
SspI AATATT 1 cut(s) 43
SspMI CTAG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 185, 304
TfiI GAWTC 1 cut(s) 34
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 2 cut(s) 9, 338
TspRI CASTG 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 253
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.