Rh1BG349500

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000281
Physical Location & Seq
Forward (+)
48220347 .. 48230946
10600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG349500.1

Sequence Viewer

Length: 669 bp
ATGTCAGATGCTTTCGCTACTTATGTTGGTGACTATAGACTGTACAGAGATAATACGTTCCTGGTGAAAAAAGGGAGAGAAGTGGAATTCGGAAAAATTCTTGGAATTGTAGCAAGCATAGATCTTTCTAACAACAATTTATCTGGGGGTATTCCTGAGGAACTGACAAATCTCCTCAGTTTGCAAACATTGAATTTATCAGCAAATCTTTTGACCGGAAGAATCCCTTCGATGATTGGCAGATTGAGGCAGTTAGAATCACTTGATTTGTCTACAAACCAACTTTCTGGTGAAATTCCTCCAAGCATGACGAATTTGACGTTTCTGAGTCACTTGAACTTGTCTCACAACAGTCTGACGGGACAGATTCCACAAAGCACTCAGCTTCAGAGTCTTGATGAGTCCAGCTTTGTCGGCAATGAGCTTTGCGGACCTCCACTCAGCAAGGATTGCAGTGCAAACAAGGCGATGCCACCAACACTTGATCGGCAAGACAAAGGATATGATTTACTGGAAGATGAGTGGTTCTACCTGAGCTTGGGATTGGGATTCATGATAAACCCATATGTCATTGGAATTCTTGAAGAAGCTGGCCTAAAATTTGTAAGGAAGGATGACAGAGGAAGAAGAATGGAGGTGGTTTTTCTTATTATCATATTGGCAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

222

Amino Acids

24.54

Weight (kDa)

4.89

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 38 - 95 5e-07 Leucine rich repeat
LRR_14 PF23598 53 - 134 2.3e-08 Leucine-rich repeat region
LRR_8 PF13855 60 - 119 1.4e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 272
AciI CCGC 1 cut(s) 429
AcsI RAATTY 7 cut(s) 86, 96, 193, 294, 313, 576, 599
AcuI CTGAAG 1 cut(s) 371
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 538
AgsI TTSAA 3 cut(s) 193, 337, 584
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 5 cut(s) 385, 408, 424, 537, 590
AluI AGCT 5 cut(s) 385, 408, 424, 537, 590
Alw26I GTCTC 1 cut(s) 348
AoxI GGCC 1 cut(s) 592
ApoI RAATTY 7 cut(s) 86, 96, 193, 294, 313, 576, 599
Asp700I GAANNNNTTC 1 cut(s) 226
AspS9I GGNCC 1 cut(s) 431
AsuHPI GGTGA 3 cut(s) 41, 76, 302
AvaII GGWCC 1 cut(s) 431
AxyI CCTNAGG 1 cut(s) 156
BciT130I CCWGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 34
BglII AGATCT 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 431
BmgT120I GGNCC 1 cut(s) 431
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 1 cut(s) 459
Bpu10I CCTNAGC 1 cut(s) 533
BsaWI WCCGGW 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 538
Bse1I ACTGG 1 cut(s) 516
Bse21I CCTNAGG 1 cut(s) 156
Bse3DI GCAATG 1 cut(s) 424
BseBI CCWGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 619
BseLI CCNNNNNNNGG 1 cut(s) 538
BseMI GCAATG 1 cut(s) 424
BseMII CTCAG 6 cut(s) 147, 190, 317, 395, 454, 524
BseNI ACTGG 1 cut(s) 516
BseRI GAGGAG 1 cut(s) 164
BshFI GGCC 1 cut(s) 594
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 1 cut(s) 538
BsmAI GTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 375
BsnI GGCC 1 cut(s) 594
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 2 cut(s) 121, 484
BspACI CCGC 1 cut(s) 429
BspANI GGCC 1 cut(s) 594
BspCNI CTCAG 6 cut(s) 148, 189, 318, 394, 453, 525
BspHI TCATGA 1 cut(s) 552
BsrDI GCAATG 1 cut(s) 424
BsrGI TGTACA 1 cut(s) 42
BsrI ACTGG 1 cut(s) 516
BssMI GATC 2 cut(s) 121, 484
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 2 cut(s) 42, 353
BstAPI GCANNNNNTGC 1 cut(s) 450
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 115, 592
BstDEI CTNAG 6 cut(s) 156, 176, 326, 381, 440, 533
BstF5I GGATG 1 cut(s) 619
BstKTI GATC 2 cut(s) 124, 487
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 2 cut(s) 121, 484
BstMWI GCNNNNNNNGC 3 cut(s) 414, 450, 464
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BstSFI CTRYAG 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 121
BstXI CCANNNNNNTGG 1 cut(s) 287
BstYI RGATCY 1 cut(s) 121
Bsu36I CCTNAGG 1 cut(s) 156
BsuRI GGCC 1 cut(s) 594
BtgZI GCGATG 1 cut(s) 482
BtsCI GGATG 1 cut(s) 619
BtsI GCAGTG 1 cut(s) 460
BtsIMutI CAGTG 1 cut(s) 460
Cac8I GCNNGC 2 cut(s) 115, 592
CciI TCATGA 1 cut(s) 552
Cfr13I GGNCC 1 cut(s) 431
Csp6I GTAC 1 cut(s) 43
CviAII CATG 2 cut(s) 307, 553
CviJI RGCY 6 cut(s) 385, 408, 424, 537, 590, 594
CviKI_1 RGCY 6 cut(s) 385, 408, 424, 537, 590, 594
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 6 cut(s) 156, 176, 326, 381, 440, 533
DpnI GATC 2 cut(s) 123, 486
DpnII GATC 2 cut(s) 121, 484
Eco47I GGWCC 1 cut(s) 431
Eco57I CTGAAG 1 cut(s) 371
Eco81I CCTNAGG 1 cut(s) 156
EcoRI GAATTC 2 cut(s) 86, 576
EcoRII CCWGG 1 cut(s) 60
FaeI CATG 2 cut(s) 310, 556
FaiI YATR 9 cut(s) 24, 36, 119, 308, 504, 554, 565, 567, 656
FalI AAGNNNNNCTT 2 cut(s) 211, 243
FaqI GGGAC 1 cut(s) 375
FatI CATG 2 cut(s) 306, 552
FauNDI CATATG 1 cut(s) 565
FblI GTMKAC 1 cut(s) 272
FokI GGATG 1 cut(s) 626
HaeIII GGCC 1 cut(s) 594
HapII CCGG 1 cut(s) 216
Hin1II CATG 2 cut(s) 310, 556
HinfI GANTC 7 cut(s) 222, 257, 328, 367, 391, 401, 549
HpaII CCGG 1 cut(s) 216
HphI GGTGA 3 cut(s) 41, 76, 302
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 5 cut(s) 7, 92, 327, 357, 390
Hpy188III TCNNGA 4 cut(s) 155, 395, 553, 581
Hpy8I GTNNAC 1 cut(s) 273
HpyAV CCTTC 2 cut(s) 237, 604
HpyCH4III ACNGT 2 cut(s) 42, 353
HpyCH4IV ACGT 2 cut(s) 56, 320
HpyCH4V TGCA 3 cut(s) 184, 453, 458
HpyF10VI GCNNNNNNNGC 3 cut(s) 414, 450, 464
HpyF3I CTNAG 6 cut(s) 156, 176, 326, 381, 440, 533
HpySE526I ACGT 2 cut(s) 56, 320
Hsp92II CATG 2 cut(s) 310, 556
Kzo9I GATC 2 cut(s) 121, 484
LweI GCATC 1 cut(s) 459
MaeII ACGT 2 cut(s) 56, 320
MaeIII GTNAC 2 cut(s) 29, 329
MalI GATC 2 cut(s) 123, 486
MboI GATC 2 cut(s) 121, 484
MboII GAAGA 5 cut(s) 231, 527, 596, 636, 639
MflI RGATCY 1 cut(s) 121
MluCI AATT 9 cut(s) 86, 96, 105, 136, 193, 294, 313, 576, 599
MlyI GAGTC 3 cut(s) 337, 400, 410
MnlI CCTC 7 cut(s) 151, 185, 240, 309, 444, 614, 628
MroXI GAANNNNTTC 1 cut(s) 226
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
MwoI GCNNNNNNNGC 3 cut(s) 414, 450, 464
NdeI CATATG 1 cut(s) 565
NdeII GATC 2 cut(s) 121, 484
NlaIII CATG 2 cut(s) 310, 556
NmuCI GTSAC 2 cut(s) 29, 329
PagI TCATGA 1 cut(s) 552
PcsI WCGNNNNNNNCGW 1 cut(s) 317
PdmI GAANNNNTTC 1 cut(s) 226
PfeI GAWTC 4 cut(s) 222, 257, 367, 549
PleI GAGTC 3 cut(s) 336, 399, 409
PpsI GAGTC 3 cut(s) 336, 399, 409
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspPI GGNCC 1 cut(s) 431
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
Sau3AI GATC 2 cut(s) 121, 484
Sau96I GGNCC 1 cut(s) 431
SchI GAGTC 3 cut(s) 337, 400, 410
ScrFI CCNGG 1 cut(s) 62
SfaNI GCATC 1 cut(s) 459
SfcI CTRYAG 1 cut(s) 34
SinI GGWCC 1 cut(s) 431
Sse9I AATT 9 cut(s) 86, 96, 105, 136, 193, 294, 313, 576, 599
SsiI CCGC 1 cut(s) 429
StyD4I CCNGG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 42, 353
TaiI ACGT 2 cut(s) 59, 323
TaqI TCGA 1 cut(s) 230
TasI AATT 9 cut(s) 86, 96, 105, 136, 193, 294, 313, 576, 599
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 4 cut(s) 222, 257, 367, 549
TscAI CASTG 1 cut(s) 460
TseFI GTSAC 2 cut(s) 29, 329
Tsp45I GTSAC 2 cut(s) 29, 329
TspDTI ATGAA 1 cut(s) 541
TspRI CASTG 1 cut(s) 460
VpaK11BI GGWCC 1 cut(s) 431
XapI RAATTY 7 cut(s) 86, 96, 193, 294, 313, 576, 599
XmiI GTMKAC 1 cut(s) 272
XmnI GAANNNNTTC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.