MD01G1173000.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000281
Physical Location & Seq
Reverse (-)
27488216 .. 27488848
633 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1173000.v1.1.491

Sequence Viewer

Length: 633 bp
ATGGAGAGAAGCACGAGAGTTGTTTTACTACTAATCAGGTTTCTAGCTATTGCAACCATTACTATCCGTATTGGTTTATGCAATGGAAATCTCCGTTGGCCTCCACTTTGGAAAGAAAGCGAAAGACAAGCACTTCTAATGTTCAAGCAAGATTTCAATGAAGAACTTACAGGCCTCCTCGCATTGCAGTCATTCAACTTATCAAAATATCGCTTCACCGGAATAATTCCCTCAAAGATTGGTAATATGAGATGGTTAGAATCTCTCAATTTGTCCACGAACAAACTCCATGGTGAAATTCCTTCGAGCATGACAAATTTGACATTTCTAAGTCACTTGAATTTGACCTACAACAATTTGACGGGACAAATTCCGGAAAACACTCAACTGCAGAGCCTTGATCAATCTAGCTTCGTCAACAACAAACTTTGCGGACCTCTGCTCTACAAGATTTGCAAAGTGAATGGGGTGATACCGCCACAAACAGTTGAGCAGGACAGAGGAGGAGGATACCATTTACTCGAAGACAAGTTGTTCTACATGACCTTGGGACTTAGATTCTCCACGGGGTTTTGGATTGTGCTTGGTTCTTTGCTAGTAAACATGCCATGGGGCATTCTTCTTTCAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

211

Amino Acids

23.8

Weight (kDa)

9.24

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 54 - 137 3.2e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 373
AciI CCGC 2 cut(s) 432, 476
AcsI RAATTY 4 cut(s) 297, 316, 340, 369
AgsI TTSAA 4 cut(s) 145, 157, 196, 340
AjuI GAANNNNNNNTTGG 2 cut(s) 79, 111
AluBI AGCT 2 cut(s) 47, 411
AluI AGCT 2 cut(s) 47, 411
Aor13HI TCCGGA 1 cut(s) 373
AoxI GGCC 2 cut(s) 98, 172
ApoI RAATTY 4 cut(s) 297, 316, 340, 369
AspS9I GGNCC 1 cut(s) 434
AsuHPI GGTGA 3 cut(s) 208, 305, 481
AvaII GGWCC 1 cut(s) 434
BauI CACGAG 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 531
BccI CCATC 1 cut(s) 246
BciVI GTATCC 1 cut(s) 503
BclI TGATCA 1 cut(s) 400
BfaI CTAG 3 cut(s) 44, 408, 596
BfmI CTRYAG 1 cut(s) 389
BfuI GTATCC 1 cut(s) 503
Bme18I GGWCC 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 434
BpiI GAAGAC 1 cut(s) 531
BsaJI CCNNGG 4 cut(s) 289, 546, 564, 608
BsaWI WCCGGW 2 cut(s) 218, 373
Bse3DI GCAATG 2 cut(s) 88, 182
BseAI TCCGGA 1 cut(s) 373
BseDI CCNNGG 4 cut(s) 289, 546, 564, 608
BseMI GCAATG 2 cut(s) 88, 182
BseRI GAGGAG 3 cut(s) 167, 516, 519
BshFI GGCC 2 cut(s) 100, 174
BsiSI CCGG 2 cut(s) 219, 374
BslFI GGGAC 2 cut(s) 378, 564
BsmFI GGGAC 2 cut(s) 378, 564
BsmI GAATGC 1 cut(s) 615
BsnI GGCC 2 cut(s) 100, 174
Bsp13I TCCGGA 1 cut(s) 373
Bsp143I GATC 1 cut(s) 400
Bsp19I CCATGG 2 cut(s) 289, 608
BspACI CCGC 2 cut(s) 432, 476
BspANI GGCC 2 cut(s) 100, 174
BspEI TCCGGA 1 cut(s) 373
BspMAI CTGCAG 1 cut(s) 393
BsrDI GCAATG 2 cut(s) 88, 182
BssECI CCNNGG 4 cut(s) 289, 546, 564, 608
BssMI GATC 1 cut(s) 400
BssSI CACGAG 1 cut(s) 13
BssT1I CCWWGG 3 cut(s) 289, 546, 608
Bst2BI CACGAG 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 487
BstDEI CTNAG 2 cut(s) 329, 554
BstDSI CCRYGG 3 cut(s) 289, 564, 608
BstKTI GATC 1 cut(s) 403
BstMBI GATC 1 cut(s) 400
BstNSI RCATGY 1 cut(s) 607
BstSFI CTRYAG 1 cut(s) 389
BstV2I GAAGAC 1 cut(s) 531
BsuI GTATCC 1 cut(s) 503
BsuRI GGCC 2 cut(s) 100, 174
BtgI CCRYGG 3 cut(s) 289, 564, 608
Cfr13I GGNCC 1 cut(s) 434
CviAII CATG 5 cut(s) 290, 310, 541, 604, 609
CviJI RGCY 5 cut(s) 47, 100, 174, 396, 411
CviKI_1 RGCY 5 cut(s) 47, 100, 174, 396, 411
DdeI CTNAG 2 cut(s) 329, 554
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
Eco130I CCWWGG 3 cut(s) 289, 546, 608
Eco147I AGGCCT 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 434
EcoT14I CCWWGG 3 cut(s) 289, 546, 608
ErhI CCWWGG 3 cut(s) 289, 546, 608
FaeI CATG 5 cut(s) 293, 313, 544, 607, 612
FaiI YATR 7 cut(s) 79, 248, 291, 311, 542, 605, 610
FaqI GGGAC 2 cut(s) 378, 564
FatI CATG 5 cut(s) 289, 309, 540, 603, 608
FbaI TGATCA 1 cut(s) 400
FspBI CTAG 3 cut(s) 44, 408, 596
HaeIII GGCC 2 cut(s) 100, 174
HapII CCGG 2 cut(s) 219, 374
Hin1II CATG 5 cut(s) 293, 313, 544, 607, 612
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 2 cut(s) 260, 558
HpaII CCGG 2 cut(s) 219, 374
HphI GGTGA 3 cut(s) 208, 305, 481
Hpy166II GTNNAC 3 cut(s) 276, 418, 601
Hpy188III TCNNGA 2 cut(s) 374, 627
Hpy8I GTNNAC 3 cut(s) 276, 418, 601
HpyAV CCTTC 1 cut(s) 312
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4V TGCA 5 cut(s) 53, 81, 187, 391, 456
HpyF3I CTNAG 2 cut(s) 329, 554
Hsp92II CATG 5 cut(s) 293, 313, 544, 607, 612
Kpn2I TCCGGA 1 cut(s) 373
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 1 cut(s) 400
LpnPI CCDG 6 cut(s) 22, 156, 232, 387, 479, 612
MaeI CTAG 3 cut(s) 44, 408, 596
MaeIII GTNAC 1 cut(s) 332
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 3 cut(s) 173, 536, 611
MluCI AATT 7 cut(s) 225, 268, 297, 316, 340, 355, 369
MnlI CCTC 8 cut(s) 111, 185, 188, 241, 447, 494, 497, 500
MroI TCCGGA 1 cut(s) 373
MspI CCGG 2 cut(s) 219, 374
Mva1269I GAATGC 1 cut(s) 615
NcoI CCATGG 2 cut(s) 289, 608
NdeII GATC 1 cut(s) 400
NlaIII CATG 5 cut(s) 293, 313, 544, 607, 612
NmuCI GTSAC 1 cut(s) 332
NspI RCATGY 1 cut(s) 607
PceI AGGCCT 1 cut(s) 174
PctI GAATGC 1 cut(s) 615
PfeI GAWTC 2 cut(s) 260, 558
PspPI GGNCC 1 cut(s) 434
PstI CTGCAG 1 cut(s) 393
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 1 cut(s) 434
SetI ASST 6 cut(s) 41, 49, 350, 413, 439, 548
SfcI CTRYAG 1 cut(s) 389
SinI GGWCC 1 cut(s) 434
Sse9I AATT 7 cut(s) 225, 268, 297, 316, 340, 355, 369
SseBI AGGCCT 1 cut(s) 174
SsiI CCGC 2 cut(s) 432, 476
SspMI CTAG 3 cut(s) 44, 408, 596
StuI AGGCCT 1 cut(s) 174
StyI CCWWGG 3 cut(s) 289, 546, 608
TaaI ACNGT 1 cut(s) 487
TaqI TCGA 2 cut(s) 305, 522
TasI AATT 7 cut(s) 225, 268, 297, 316, 340, 355, 369
TfiI GAWTC 2 cut(s) 260, 558
TseFI GTSAC 1 cut(s) 332
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 1 cut(s) 174
TspGWI ACGGA 2 cut(s) 56, 83
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 4 cut(s) 297, 316, 340, 369
XceI RCATGY 1 cut(s) 607
XspI CTAG 3 cut(s) 44, 408, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.