MD15G1430300.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000281
Physical Location & Seq
Forward (+)
53079922 .. 53081321
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1430300.v1.1.491

Sequence Viewer

Length: 597 bp
ATGATTAACTTAAGGTCGAACTGGTTCAACAGTTCATTGCCTTTTGTGTCTAGACTAGATCTTTCCAATTCATCATTTTCAGGGACTCTCTCTCACTTCTTTTGTGATAGGAGTGATGTACCTAAAGACCTTCAAGTTCTTCATCTTGATAACAATTTCCTCGTTGGAGAAATTCCTGATTGTTTATTACACTGGCCAAACTTGACAGTTGTGAAATTAGATGACAACTATTTGACGGGAAAAATTCCAAGCTCTATCGGGGACTTACTTTCCCTTCAATCATTGCACTTGCGCAATAATAACCTATCTGGAGAATTACATGTGTCCCTACAAAACTGTAAGGAGCTGTTACTTCTTGACCTTGGTGGAAACAAGTTTGTTGGAAGTATTCCAATATGGTTTGGGCAAAGCTTGGTTGTTCTTAGTCTTCGTTCAAATAAGTTCCATGGCAGCATTCCTGATGAACTTTGTAGTCTCATAAAACTCCGAATCTTGGACCTTGCGCATAACAGTCTCTCGGGAGCGATACCAAGATGTTTCCAACATTTGTCATCCATGGCCATAGCCACATCAGATTTGGACAATCGGTCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

199

Amino Acids

22.0

Weight (kDa)

6.21

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 44 - 102 8.5e-08 Leucine rich repeat
LRR_8 PF13855 66 - 126 1.8e-06 Leucine rich repeat
LRR_14 PF23598 71 - 170 2.8e-06 Leucine-rich repeat region
LRR_8 PF13855 137 - 185 2e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 293, 504
AccI GTMKAC 1 cut(s) 590
AcoI YGGCCR 2 cut(s) 194, 558
AcsI RAATTY 2 cut(s) 171, 243
AfaI GTAC 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 493
AflII CTTAAG 1 cut(s) 10
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 4 cut(s) 28, 134, 278, 435
AhdI GACNNNNNGTC 1 cut(s) 586
AluBI AGCT 3 cut(s) 252, 346, 411
AluI AGCT 3 cut(s) 252, 346, 411
Alw26I GTCTC 2 cut(s) 479, 518
Ama87I CYCGRG 1 cut(s) 517
AoxI GGCC 2 cut(s) 194, 558
ApeKI GCWGC 1 cut(s) 450
ApoI RAATTY 2 cut(s) 171, 243
Asp700I GAANNNNTTC 1 cut(s) 23
AspLEI GCGC 2 cut(s) 294, 505
AspS9I GGNCC 1 cut(s) 496
AvaI CYCGRG 1 cut(s) 517
AvaII GGWCC 1 cut(s) 496
BalI TGGCCA 2 cut(s) 196, 560
BbsI GAAGAC 1 cut(s) 419
BbvI GCAGC 1 cut(s) 462
BcoDI GTCTC 2 cut(s) 479, 518
BfaI CTAG 2 cut(s) 51, 56
BfrI CTTAAG 1 cut(s) 10
BglII AGATCT 1 cut(s) 58
BisI GCNGC 1 cut(s) 451
BlsI GCNGC 1 cut(s) 452
Bme18I GGWCC 1 cut(s) 496
BmeRI GACNNNNNGTC 1 cut(s) 586
BmeT110I CYCGRG 1 cut(s) 517
BmgT120I GGNCC 1 cut(s) 496
BpiI GAAGAC 1 cut(s) 419
BpmI CTGGAG 1 cut(s) 330
BsaJI CCNNGG 3 cut(s) 361, 445, 555
Bsc4I CCNNNNNNNGG 1 cut(s) 493
Bse1I ACTGG 2 cut(s) 26, 197
Bse3DI GCAATG 2 cut(s) 35, 281
BseDI CCNNGG 3 cut(s) 361, 445, 555
BseGI GGATG 1 cut(s) 551
BseLI CCNNNNNNNGG 1 cut(s) 493
BseMI GCAATG 2 cut(s) 35, 281
BseNI ACTGG 2 cut(s) 26, 197
BseXI GCAGC 1 cut(s) 462
BshFI GGCC 2 cut(s) 196, 560
BsiHKCI CYCGRG 1 cut(s) 517
BslFI GGGAC 3 cut(s) 97, 275, 310
BslI CCNNNNNNNGG 1 cut(s) 493
BsmAI GTCTC 2 cut(s) 479, 518
BsmFI GGGAC 3 cut(s) 97, 275, 310
BsmI GAATGC 1 cut(s) 453
BsnI GGCC 2 cut(s) 196, 560
BsoBI CYCGRG 1 cut(s) 517
Bsp143I GATC 1 cut(s) 58
Bsp19I CCATGG 2 cut(s) 445, 555
BspANI GGCC 2 cut(s) 196, 560
BspTI CTTAAG 1 cut(s) 10
BsrDI GCAATG 2 cut(s) 35, 281
BsrI ACTGG 2 cut(s) 26, 197
BssECI CCNNGG 3 cut(s) 361, 445, 555
BssMI GATC 1 cut(s) 58
BssT1I CCWWGG 3 cut(s) 361, 445, 555
Bst4CI ACNGT 4 cut(s) 32, 208, 338, 512
BstAFI CTTAAG 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 422
BstDSI CCRYGG 2 cut(s) 445, 555
BstF5I GGATG 1 cut(s) 551
BstHHI GCGC 2 cut(s) 294, 505
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 2 cut(s) 479, 518
BstMBI GATC 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 323
BstV1I GCAGC 1 cut(s) 462
BstV2I GAAGAC 1 cut(s) 419
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 2 cut(s) 196, 560
BtgI CCRYGG 2 cut(s) 445, 555
BtsCI GGATG 1 cut(s) 551
BtsIMutI CAGTG 1 cut(s) 190
CfoI GCGC 2 cut(s) 294, 505
Cfr13I GGNCC 1 cut(s) 496
Csp6I GTAC 1 cut(s) 119
CviAII CATG 3 cut(s) 320, 446, 556
CviJI RGCY 6 cut(s) 196, 252, 346, 411, 560, 566
CviKI_1 RGCY 6 cut(s) 196, 252, 346, 411, 560, 566
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 1 cut(s) 422
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
DriI GACNNNNNGTC 1 cut(s) 586
EaeI YGGCCR 2 cut(s) 194, 558
Eam1105I GACNNNNNGTC 1 cut(s) 586
Eco130I CCWWGG 3 cut(s) 361, 445, 555
Eco47I GGWCC 1 cut(s) 496
Eco88I CYCGRG 1 cut(s) 517
EcoT14I CCWWGG 3 cut(s) 361, 445, 555
ErhI CCWWGG 3 cut(s) 361, 445, 555
FaeI CATG 3 cut(s) 323, 449, 559
FaiI YATR 8 cut(s) 321, 397, 447, 479, 507, 557, 563, 595
FaqI GGGAC 3 cut(s) 97, 275, 310
FatI CATG 3 cut(s) 319, 445, 555
FblI GTMKAC 1 cut(s) 590
Fnu4HI GCNGC 1 cut(s) 451
FokI GGATG 1 cut(s) 538
Fsp4HI GCNGC 1 cut(s) 451
FspBI CTAG 2 cut(s) 51, 56
FspI TGCGCA 2 cut(s) 293, 504
GlaI GCGC 2 cut(s) 293, 504
GluI GCNGC 1 cut(s) 451
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 2 cut(s) 196, 560
HhaI GCGC 2 cut(s) 294, 505
Hin1II CATG 3 cut(s) 323, 449, 559
Hin6I GCGC 2 cut(s) 292, 503
HinP1I GCGC 2 cut(s) 292, 503
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 2 cut(s) 85, 489
Hpy166II GTNNAC 1 cut(s) 591
Hpy188I TCNGA 2 cut(s) 488, 574
Hpy188III TCNNGA 7 cut(s) 51, 146, 176, 309, 356, 458, 519
Hpy8I GTNNAC 1 cut(s) 591
HpyAV CCTTC 2 cut(s) 140, 284
HpyCH4III ACNGT 4 cut(s) 32, 208, 338, 512
HpyCH4V TGCA 1 cut(s) 286
HpyF3I CTNAG 1 cut(s) 422
Hsp92II CATG 3 cut(s) 323, 449, 559
HspAI GCGC 2 cut(s) 292, 503
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 2 cut(s) 343, 521
LpnPI CCDG 6 cut(s) 7, 66, 178, 189, 294, 471
Lsp1109I GCAGC 1 cut(s) 462
MaeI CTAG 2 cut(s) 51, 56
MaeIII GTNAC 1 cut(s) 348
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 2 cut(s) 131, 419
MflI RGATCY 1 cut(s) 58
MlsI TGGCCA 2 cut(s) 196, 560
MluCI AATT 6 cut(s) 67, 154, 171, 215, 243, 314
MluNI TGGCCA 2 cut(s) 196, 560
MlyI GAGTC 1 cut(s) 79
MmeI TCCRAC 3 cut(s) 145, 361, 565
MnlI CCTC 1 cut(s) 170
Mox20I TGGCCA 2 cut(s) 196, 560
MroXI GAANNNNTTC 1 cut(s) 23
MscI TGGCCA 2 cut(s) 196, 560
MseI TTAA 2 cut(s) 6, 11
Msp20I TGGCCA 2 cut(s) 196, 560
MspCI CTTAAG 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 453
NcoI CCATGG 2 cut(s) 445, 555
NdeII GATC 1 cut(s) 58
NlaIII CATG 3 cut(s) 323, 449, 559
NsbI TGCGCA 2 cut(s) 293, 504
NspI RCATGY 1 cut(s) 323
PciI ACATGT 1 cut(s) 319
PctI GAATGC 1 cut(s) 453
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 489
PkrI GCNGC 1 cut(s) 452
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PscI ACATGT 1 cut(s) 319
PspPI GGNCC 1 cut(s) 496
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
SaqAI TTAA 2 cut(s) 6, 11
SatI GCNGC 1 cut(s) 451
Sau3AI GATC 1 cut(s) 58
Sau96I GGNCC 1 cut(s) 496
SchI GAGTC 1 cut(s) 79
SetI ASST 9 cut(s) 17, 124, 132, 254, 306, 348, 363, 413, 501
SinI GGWCC 1 cut(s) 496
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 6 cut(s) 67, 154, 171, 215, 243, 314
SspMI CTAG 2 cut(s) 51, 56
StyI CCWWGG 3 cut(s) 361, 445, 555
TaaI ACNGT 4 cut(s) 32, 208, 338, 512
TaqI TCGA 1 cut(s) 17
TaqII GACCGA 1 cut(s) 576
TasI AATT 6 cut(s) 67, 154, 171, 215, 243, 314
TfiI GAWTC 1 cut(s) 489
Tru1I TTAA 2 cut(s) 6, 11
Tru9I TTAA 2 cut(s) 6, 11
TscAI CASTG 1 cut(s) 197
TseI GCWGC 1 cut(s) 450
TspDTI ATGAA 4 cut(s) 24, 60, 131, 477
TspRI CASTG 1 cut(s) 197
Vha464I CTTAAG 1 cut(s) 10
VpaK11BI GGWCC 1 cut(s) 496
XapI RAATTY 2 cut(s) 171, 243
XbaI TCTAGA 1 cut(s) 50
XceI RCATGY 1 cut(s) 323
XcmI CCANNNNNNNNNTGG 1 cut(s) 574
XmiI GTMKAC 1 cut(s) 590
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 2 cut(s) 51, 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.