MD08G1144300.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
14351493 .. 14353267
1775 bp
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UTR
Exon/CDS
Intron
MD08G1144300.v1.1.491

Sequence Viewer

Length: 195 bp
ATGGGTCTCGAATTTTCGAGGAACAATTTCAACGGAAGCATTGCAAAAATATTTGAAAGCTTGTCTACATGCAATTCAGGTCGCATTGGGTCATTGGGTCTATCAGATAATAATCATTCTGGGCATATGTTTCGGTGTACAATGTGTAGTCGACGCAAGGAACCTTTGGCATCCTGGTATTTGCTTAATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

65

Amino Acids

7.19

Weight (kDa)

8.63

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21840 FvH4_5g27300 FvH4_7g26560 FvH4_7g26561 FvH4_7g26564 FvH4_7g26565 FvH4_7g26565 FvH4_7g26566 FvH4_7g26567 FvH4_7g26600 FvH4_7g26610
malus_domestica MD01G1000900.v1.1 MD01G1131400.v1.1 MD01G1165400.v1.1 MD01G1165600.v1.1 MD01G1172100.v1.1 MD01G1172300.v1.1 MD01G1172800.v1.1 MD01G1173000.v1.1 MD01G1174800.v1.1 MD01G1178700.v1.1 MD01G1178900.v1.1 MD01G1179300.v1.1 MD01G1179700.v1.1 MD01G1179800.v1.1 MD01G1180500.v1.1 MD04G1020400.v1.1 MD06G1026600.v1.1 MD08G1144300.v1.1 MD08G1144400.v1.1 MD08G1237900.v1.1 MD08G1238300.v1.1 MD08G1238900.v1.1 MD08G1239000.v1.1 MD08G1239100.v1.1 MD08G1239200.v1.1 MD11G1217100.v1.1 MD15G1414600.v1.1 MD15G1414700.v1.1 MD15G1414900.v1.1 MD15G1415000.v1.1 MD15G1426700.v1.1 MD15G1427000.v1.1 MD15G1429700.v1.1 MD15G1429800.v1.1 MD15G1430200.v1.1 MD15G1430300.v1.1 MD15G1439600.v1.1
prunus_persica Prupe.1G055200_v2.0.a1 Prupe.1G526400_v2.0.a1 Prupe.1G541000_v2.0.a1 Prupe.1G575100_v2.0.a1 Prupe.1G575200_v2.0.a1 Prupe.1G575300_v2.0.a1 Prupe.1G575500_v2.0.a1 Prupe.2G270000_v2.0.a1 Prupe.2G270200_v2.0.a1 Prupe.3G019500_v2.0.a1 Prupe.3G019600_v2.0.a1 Prupe.3G021800_v2.0.a1 Prupe.3G029200_v2.0.a1 Prupe.3G055300_v2.0.a1 Prupe.3G064900_v2.0.a1 Prupe.6G311600_v2.0.a1
pyrus_communis pycom01g18380 pycom01g18440 pycom01g18460 pycom01g18480 pycom01g18930 pycom01g18940 pycom01g18960 pycom01g18990 pycom01g19030 pycom01g19050 pycom01g19070 pycom08g20740 pycom08g20750 pycom11g19100 pycom12g20310 pycom14g10700 pycom15g10840 pycom15g37770 pycom15g37830 pycom15g37860 pycom15g38010 pycom15g38040 pycom15g38750 pycom420g00350 pycom420g00400 pycom420g00410 pycom420g00510 pycom420g00540 pycom976g00210
rosa_chinensis RchiOBHm_Chr1g0373231 RchiOBHm_Chr1g0373241 RchiOBHm_Chr1g0373251
rosa_laevigata RLG00000026834 RLG00000026835 RLG00000026836 RLG00000026837 RLG00000026839 RLG00000026840 RLG00000026841
rosa_multiflora Rmu_co8123616.1_g000001 Rmu_sc0000170.1_g000006 Rmu_sc0000170.1_g000007 Rmu_sc0000170.1_g000009 Rmu_sc0008079.1_g000015 Rmu_sc0013594.1_g000002
rosa_roxburghii Rroxscaffold_4G00284310 Rroxscaffold_4G00284320 Rroxscaffold_4G00284350 Rroxscaffold_4G00284370
rosa_rugosa Rorug01G0376700 Rorug01G0376800
rosa_samantha Rh1BG349500 Rh1CG362800 Rh3BG125200
rosa_wichuraiana Rw0G003040 Rw0G015420 Rw1G034010 Rw1G034020 Rw1G034030 Rw1G034950 Rw1G034960 Rw1G034970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 65, 151
AcsI RAATTY 1 cut(s) 11
AfaI GTAC 1 cut(s) 139
AgsI TTSAA 2 cut(s) 31, 56
AjnI CCWGG 1 cut(s) 173
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 11
Asp700I GAANNNNTTC 1 cut(s) 26
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BciT130I CCWGG 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 175
BmsI GCATC 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 111
BseBI CCWGG 1 cut(s) 175
BseGI GGATG 1 cut(s) 170
BseJI GATNNNNATC 1 cut(s) 111
BseMI GCAATG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 11
Bso31I GGTCTC 1 cut(s) 11
Bsp1407I TGTACA 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 162
BspTNI GGTCTC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 175
BstAUI TGTACA 1 cut(s) 137
BstF5I GGATG 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 175
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 173
BtsCI GGATG 1 cut(s) 170
CseI GACGC 1 cut(s) 162
Csp6I GTAC 1 cut(s) 138
CviAII CATG 1 cut(s) 69
CviJI RGCY 1 cut(s) 60
CviKI_1 RGCY 1 cut(s) 60
CviQI GTAC 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 173
FaeI CATG 1 cut(s) 72
FaiI YATR 3 cut(s) 70, 126, 128
FatI CATG 1 cut(s) 68
FauNDI CATATG 1 cut(s) 126
FblI GTMKAC 2 cut(s) 65, 151
FokI GGATG 1 cut(s) 157
HgaI GACGC 1 cut(s) 162
Hin1II CATG 1 cut(s) 72
HincII GTYRAC 1 cut(s) 152
HindII GTYRAC 1 cut(s) 152
HindIII AAGCTT 1 cut(s) 58
Hpy166II GTNNAC 3 cut(s) 66, 138, 152
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 3 cut(s) 66, 138, 152
Hpy99I CGWCG 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 44, 72
Hsp92II CATG 1 cut(s) 72
LpnPI CCDG 4 cut(s) 63, 105, 160, 187
LweI GCATC 1 cut(s) 179
MluCI AATT 3 cut(s) 11, 25, 73
MnlI CCTC 1 cut(s) 12
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 175
MvaI CCWGG 1 cut(s) 175
NdeI CATATG 1 cut(s) 126
NlaIII CATG 1 cut(s) 72
NlaIV GGNNCC 1 cut(s) 162
NspI RCATGY 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 173
PspGI CCWGG 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 162
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
SalI GTCGAC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 175
SetI ASST 3 cut(s) 62, 82, 166
SfaNI GCATC 1 cut(s) 179
SgeI CNNG 9 cut(s) 20, 30, 73, 81, 90, 132, 169, 186, 187
Sse9I AATT 3 cut(s) 11, 25, 73
SspI AATATT 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 173
TaqI TCGA 3 cut(s) 9, 17, 151
TasI AATT 3 cut(s) 11, 25, 73
TatI WGTACW 1 cut(s) 137
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TspGWI ACGGA 1 cut(s) 48
XapI RAATTY 1 cut(s) 11
XceI RCATGY 1 cut(s) 72
XmiI GTMKAC 2 cut(s) 65, 151
XmnI GAANNNNTTC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.